Wall clock time and date at job start Tue Mar 31 2020 05:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.43632 * 2 1 4 4 C 1.54100 * 110.60390 * 122.61812 * 2 1 3 5 5 O 1.43891 * 107.37311 * 116.83413 * 4 2 1 6 6 C 1.44373 * 106.90184 * 26.27479 * 5 4 2 7 7 H 1.09006 * 110.62050 * 78.73749 * 6 5 4 8 8 C 1.50698 * 110.61963 * 201.57918 * 6 5 4 9 9 O 1.20824 * 120.00124 * 1.41810 * 8 6 5 10 10 O 1.34228 * 120.00017 * 181.42097 * 8 6 5 11 11 C 1.45198 * 117.00233 * 179.97438 * 10 8 6 12 12 C 1.52996 * 109.47380 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.41732 * 55.00292 * 12 11 10 14 14 C 1.52966 * 109.41283 * 174.86128 * 12 11 10 15 15 C 1.53230 * 109.39933 * 183.70374 * 14 12 11 16 16 C 1.51264 * 108.54292 * 305.36948 * 15 14 12 17 17 C 1.37873 * 120.85374 * 231.37407 * 16 15 14 18 18 N 1.31516 * 120.00240 * 164.54097 * 17 16 15 19 19 Si 1.86798 * 120.00072 * 344.53689 * 17 16 15 20 20 H 1.48500 * 109.47080 * 354.64372 * 19 17 16 21 21 H 1.48504 * 109.47053 * 114.63748 * 19 17 16 22 22 H 1.48496 * 109.47387 * 234.64141 * 19 17 16 23 23 C 1.51270 * 118.29813 * 51.34877 * 16 15 14 24 24 C 1.52963 * 109.41367 * 295.14173 * 12 11 10 25 25 C 1.54817 * 110.48764 * 237.45492 * 2 1 3 26 26 H 1.08999 * 109.46564 * 182.54742 * 1 2 3 27 27 H 1.09004 * 109.46875 * 302.54108 * 1 2 3 28 28 H 1.09000 * 109.47367 * 62.54840 * 1 2 3 29 29 H 1.08999 * 109.88169 * 236.12642 * 4 2 1 30 30 H 1.08998 * 109.87685 * 357.27896 * 4 2 1 31 31 H 1.09006 * 109.46717 * 59.99953 * 11 10 8 32 32 H 1.09001 * 109.47332 * 300.00434 * 11 10 8 33 33 H 1.08994 * 109.47949 * 303.68298 * 14 12 11 34 34 H 1.08992 * 109.48218 * 63.72688 * 14 12 11 35 35 H 1.09002 * 109.62644 * 65.09084 * 15 14 12 36 36 H 1.09004 * 109.62063 * 185.65549 * 15 14 12 37 37 H 0.96996 * 120.00284 * 180.02562 * 18 17 16 38 38 H 1.09007 * 109.62452 * 68.36754 * 23 16 15 39 39 H 1.08997 * 109.62648 * 188.74749 * 23 16 15 40 40 H 1.08991 * 109.48408 * 296.27655 * 24 12 11 41 41 H 1.08995 * 109.48196 * 56.31817 * 24 12 11 42 42 H 1.08995 * 110.90993 * 102.11141 * 25 2 1 43 43 H 1.08994 * 110.90477 * 338.50235 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0723 -0.7775 1.2149 5 8 2.8037 -1.9088 0.7094 6 6 3.2681 -1.5527 -0.6104 7 1 4.1474 -0.9115 -0.5479 8 6 3.5708 -2.7885 -1.4179 9 8 3.3873 -3.8827 -0.9395 10 8 4.0443 -2.6737 -2.6686 11 6 4.3139 -3.9062 -3.3872 12 6 4.8427 -3.5768 -4.7846 13 1 5.7115 -2.9242 -4.6987 14 6 5.2467 -4.8706 -5.4935 15 6 5.8617 -4.5339 -6.8559 16 6 4.8809 -3.6800 -7.6286 17 6 4.5159 -4.0118 -8.9161 18 7 3.4564 -3.4567 -9.4630 19 14 5.5262 -5.2496 -9.8838 20 1 6.7300 -5.6266 -9.1002 21 1 4.7071 -6.4602 -10.1460 22 1 5.9448 -4.6460 -11.1744 23 6 4.3103 -2.4531 -6.9524 24 6 3.7509 -2.8668 -5.5869 25 6 2.0718 -0.7802 -1.2225 26 1 -0.3632 -1.0267 0.0457 27 1 -0.3633 0.5528 0.8664 28 1 -0.3634 0.4737 -0.9119 29 1 2.7375 -0.1394 1.7966 30 1 1.2443 -1.1177 1.8368 31 1 3.3941 -4.4847 -3.4742 32 1 5.0589 -4.4879 -2.8442 33 1 5.9778 -5.4046 -4.8865 34 1 4.3662 -5.4968 -5.6369 35 1 6.7917 -3.9839 -6.7119 36 1 6.0587 -5.4540 -7.4061 37 1 3.1994 -3.6904 -10.3686 38 1 5.0967 -1.7104 -6.8173 39 1 3.5128 -2.0343 -7.5661 40 1 2.9066 -3.5414 -5.7281 41 1 3.4213 -1.9796 -5.0463 42 1 2.4081 -0.0968 -2.0022 43 1 1.3205 -1.4691 -1.6084 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893024182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:55 Heat of formation + Delta-G solvation = -158.433778 kcal Electronic energy + Delta-G solvation = -22605.099602 eV Core-core repulsion = 19228.269437 eV Total energy + Delta-G solvation = -3376.830165 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.72414 -39.33002 -37.29183 -35.90786 -33.86774 -32.64191 -30.92355 -29.68797 -29.18297 -26.70037 -25.50403 -23.97977 -21.64377 -21.31441 -20.85947 -20.41813 -19.14784 -17.85546 -16.96858 -16.62307 -16.25218 -15.83401 -15.44844 -14.64001 -14.39794 -14.31217 -13.70346 -13.48259 -13.09315 -13.02905 -12.87320 -12.69257 -12.51471 -12.07771 -11.93397 -11.69196 -11.52258 -11.34437 -11.21664 -11.10540 -10.89383 -10.79684 -10.68369 -10.30367 -10.12345 -9.97452 -9.92485 -9.78038 -9.48033 -8.84241 -8.64443 -8.32463 -6.11858 -3.96453 2.22026 2.43512 3.26258 3.36917 3.39648 3.74996 4.11949 4.38798 4.39867 4.46562 4.72074 4.76888 4.88891 5.09972 5.11737 5.27539 5.33576 5.37451 5.40427 5.41381 5.54101 5.68541 5.68627 5.69357 5.88686 5.96486 6.06366 6.30013 6.42935 6.56284 6.60610 6.73771 6.83415 6.93453 7.08282 7.12524 7.23787 7.42758 7.67673 7.77483 7.85985 7.88050 8.42609 8.99182 9.56303 10.98062 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032400 B = 0.003386 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.981791 B = 8268.460949 C = 8873.424594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 H 0.090 0.910 4 C 0.048 3.952 5 O -0.351 6.351 6 C 0.086 3.914 7 H 0.109 0.891 8 C 0.462 3.538 9 O -0.495 6.495 10 O -0.346 6.346 11 C 0.073 3.927 12 C -0.072 4.072 13 H 0.070 0.930 14 C -0.099 4.099 15 C -0.013 4.013 16 C -0.492 4.492 17 C 0.078 3.922 18 N -0.884 5.884 19 Si 0.878 3.122 20 H -0.262 1.262 21 H -0.284 1.284 22 H -0.286 1.286 23 C 0.009 3.991 24 C -0.101 4.101 25 C -0.138 4.138 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.034 0.966 34 H 0.055 0.945 35 H 0.015 0.985 36 H 0.033 0.967 37 H 0.263 0.737 38 H 0.002 0.998 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.035 0.965 42 H 0.099 0.901 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.860 7.231 17.444 19.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 H 0.108 0.892 4 C -0.029 4.029 5 O -0.270 6.270 6 C 0.027 3.973 7 H 0.127 0.873 8 C 0.303 3.697 9 O -0.381 6.381 10 O -0.262 6.262 11 C 0.000 4.000 12 C -0.091 4.091 13 H 0.088 0.912 14 C -0.137 4.137 15 C -0.051 4.051 16 C -0.511 4.511 17 C -0.125 4.125 18 N -0.521 5.521 19 Si 0.706 3.294 20 H -0.186 1.186 21 H -0.210 1.210 22 H -0.212 1.212 23 C -0.028 4.028 24 C -0.138 4.138 25 C -0.175 4.175 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.020 0.980 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.118 0.882 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.991 6.678 17.495 18.964 hybrid contribution 0.413 -0.664 -0.629 1.003 sum -2.578 6.014 16.867 18.091 Atomic orbital electron populations 1.21835 0.93493 1.02534 1.02345 1.22560 0.97541 1.00230 0.94207 0.89200 1.23411 0.95834 0.87652 0.95957 1.89023 1.72044 1.37721 1.28223 1.22485 0.99536 0.91534 0.83736 0.87350 1.23033 0.74604 0.90604 0.81410 1.90671 1.47878 1.28676 1.70922 1.86478 1.75006 1.38951 1.25802 1.23522 1.00832 0.82890 0.92772 1.21122 0.99536 0.98987 0.89441 0.91164 1.21549 0.99580 0.94725 0.97892 1.19737 0.95947 0.96748 0.92636 1.20022 1.23859 1.09431 0.97812 1.24822 0.94268 0.96094 0.97289 1.69916 1.22853 1.44271 1.15062 0.86792 0.81539 0.81279 0.79825 1.18606 1.20987 1.21220 1.19392 0.96475 0.95290 0.91661 1.21611 0.96536 0.97743 0.97949 1.23198 0.96504 0.99459 0.98382 0.92069 0.92179 0.91853 0.91766 0.89143 0.91394 0.91847 0.94714 0.92648 0.96707 0.94837 0.92712 0.97957 0.92718 0.93269 0.94668 0.88236 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.93 37.16 0.33 -0.64 16 2 C -0.13 -0.94 3.64 -89.09 -0.32 -1.26 16 3 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 4 C 0.05 0.41 7.37 37.73 0.28 0.69 16 5 O -0.35 -4.54 10.81 -54.35 -0.59 -5.12 16 6 C 0.09 1.02 3.87 -26.83 -0.10 0.91 16 7 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 8 C 0.46 7.25 7.33 36.00 0.26 7.51 16 9 O -0.49 -9.33 16.31 -25.24 -0.41 -9.75 16 10 O -0.35 -5.63 9.69 -39.25 -0.38 -6.01 16 11 C 0.07 1.25 4.83 37.16 0.18 1.43 16 12 C -0.07 -1.38 2.33 -90.66 -0.21 -1.59 16 13 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 14 C -0.10 -1.99 5.21 -26.63 -0.14 -2.13 16 15 C -0.01 -0.30 5.47 -27.49 -0.15 -0.45 16 16 C -0.49 -12.87 5.44 -98.93 -0.54 -13.41 16 17 C 0.08 2.13 5.43 -17.82 -0.10 2.03 16 18 N -0.88 -25.32 12.81 55.43 0.71 -24.61 16 19 Si 0.88 20.78 27.63 -169.99 -4.70 16.09 16 20 H -0.26 -5.96 6.14 56.52 0.35 -5.61 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.01 0.23 6.00 -27.48 -0.16 0.06 16 24 C -0.10 -2.14 5.15 -26.62 -0.14 -2.27 16 25 C -0.14 -1.33 6.13 -24.72 -0.15 -1.48 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.68 7.70 -51.93 -0.40 0.28 16 31 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 32 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.03 0.77 5.02 -51.93 -0.26 0.50 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.00 0.05 8.14 -51.92 -0.42 -0.37 16 39 H 0.05 1.48 7.10 -51.93 -0.37 1.11 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.03 0.69 7.72 -51.93 -0.40 0.29 16 42 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.09 0.93 7.78 -51.93 -0.40 0.53 16 LS Contribution 340.48 15.07 5.13 5.13 Total: -1.00 -30.66 340.48 -8.56 -39.22 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -7.36 Total: -4.35 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -0.96 Total: -10.61 kcal Atomic # 7 Polarization: -25.32 SS G_CDS: 0.71 Total: -24.61 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -1.38 Total: -20.88 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.70 Total: 16.09 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.66 -8.56 -39.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893024182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.212 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds