Wall clock time and date at job start Tue Mar 31 2020 05:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.80634 * 2 1 4 4 C 1.54994 * 110.91108 * 123.63305 * 2 1 3 5 5 O 1.44376 * 103.49199 * 155.25386 * 4 2 1 6 6 C 1.43747 * 106.97870 * 319.93894 * 5 4 2 7 7 H 1.08996 * 109.87915 * 266.93757 * 6 5 4 8 8 C 1.50695 * 109.87932 * 145.93388 * 6 5 4 9 9 O 1.20827 * 119.99919 * 356.46133 * 8 6 5 10 10 O 1.34234 * 120.00293 * 176.45409 * 8 6 5 11 11 C 1.45201 * 117.00181 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.46935 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.35410 * 55.17992 * 12 11 10 14 14 C 1.52955 * 109.41066 * 175.00468 * 12 11 10 15 15 C 1.53236 * 109.40158 * 183.70493 * 14 12 11 16 16 C 1.51267 * 108.53381 * 305.36921 * 15 14 12 17 17 C 1.37882 * 120.84502 * 231.36932 * 16 15 14 18 18 N 1.31514 * 120.00448 * 0.02562 * 17 16 15 19 19 Si 1.86799 * 119.99596 * 180.02562 * 17 16 15 20 20 H 1.48497 * 109.47428 * 59.99758 * 19 17 16 21 21 H 1.48500 * 109.47347 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46979 * 299.99879 * 19 17 16 23 23 C 1.51263 * 118.30394 * 51.35053 * 16 15 14 24 24 C 1.52965 * 109.41206 * 295.35546 * 12 11 10 25 25 C 1.54099 * 107.29174 * 26.51510 * 6 5 4 26 26 H 1.08996 * 109.46822 * 297.81926 * 1 2 3 27 27 H 1.08998 * 109.47218 * 57.81914 * 1 2 3 28 28 H 1.09003 * 109.46945 * 177.82030 * 1 2 3 29 29 H 1.09010 * 110.61478 * 36.75489 * 4 2 1 30 30 H 1.08996 * 110.61948 * 273.75814 * 4 2 1 31 31 H 1.09000 * 109.47035 * 60.00348 * 11 10 8 32 32 H 1.08998 * 109.47122 * 300.00493 * 11 10 8 33 33 H 1.08988 * 109.48772 * 63.72545 * 14 12 11 34 34 H 1.09004 * 109.47866 * 303.67718 * 14 12 11 35 35 H 1.09000 * 109.62824 * 65.08814 * 15 14 12 36 36 H 1.09004 * 109.62129 * 185.46159 * 15 14 12 37 37 H 0.96993 * 120.00191 * 180.02562 * 18 17 16 38 38 H 1.09005 * 109.62818 * 68.36240 * 23 16 15 39 39 H 1.08994 * 109.63088 * 188.93762 * 23 16 15 40 40 H 1.08995 * 109.48255 * 56.31947 * 24 12 11 41 41 H 1.08998 * 109.49045 * 296.27928 * 24 12 11 42 42 H 1.09002 * 110.49130 * 116.64125 * 25 6 5 43 43 H 1.08998 * 110.48891 * 239.29299 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 6 2.0832 -0.8019 1.2055 5 8 3.3945 -1.2135 0.7631 6 6 3.2728 -1.5875 -0.6195 7 1 3.0867 -2.6585 -0.6987 8 6 4.5359 -1.2309 -1.3599 9 8 5.4284 -0.6513 -0.7877 10 8 4.6696 -1.5571 -2.6551 11 6 5.9133 -1.1828 -3.3043 12 6 5.8815 -1.6338 -4.7659 13 1 4.9977 -1.2210 -5.2522 14 6 7.1368 -1.1306 -5.4806 15 6 7.0609 -1.5025 -6.9652 16 6 6.8361 -2.9942 -7.0763 17 6 7.6437 -3.7731 -7.8777 18 7 8.6248 -3.2207 -8.5573 19 14 7.3444 -5.6130 -7.9979 20 1 5.9763 -5.8589 -8.5204 21 1 8.3419 -6.2179 -8.9168 22 1 7.4774 -6.2252 -6.6514 23 6 5.7030 -3.6096 -6.2855 24 6 5.8280 -3.1613 -4.8256 25 6 2.0833 -0.8011 -1.2038 26 1 -0.3633 0.4796 0.9089 27 1 -0.3633 0.5473 -0.8698 28 1 -0.3633 -1.0270 -0.0391 29 1 1.4566 -1.6704 1.4088 30 1 2.1578 -0.1662 2.0877 31 1 6.7484 -1.6625 -2.7938 32 1 6.0344 -0.1004 -3.2609 33 1 8.0182 -1.5914 -5.0350 34 1 7.2025 -0.0471 -5.3802 35 1 6.2324 -0.9714 -7.4338 36 1 7.9946 -1.2322 -7.4584 37 1 9.1927 -3.7686 -9.1213 38 1 4.7486 -3.2737 -6.6912 39 1 5.7654 -4.6964 -6.3413 40 1 4.9663 -3.5172 -4.2610 41 1 6.7404 -3.5743 -4.3954 42 1 2.4216 -0.1249 -1.9889 43 1 1.3258 -1.4845 -1.5877 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893024183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:58 Heat of formation + Delta-G solvation = -161.361888 kcal Electronic energy + Delta-G solvation = -22577.620208 eV Core-core repulsion = 19200.663071 eV Total energy + Delta-G solvation = -3376.957137 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.79525 -39.31468 -37.29920 -35.91208 -33.95631 -32.63713 -30.96957 -29.82231 -29.07621 -26.75532 -25.43349 -23.93549 -21.73564 -21.14879 -21.05185 -20.60694 -19.20649 -17.75803 -17.00642 -16.65495 -16.12425 -15.77668 -15.41911 -14.93924 -14.44220 -14.30137 -13.69610 -13.56459 -13.26293 -13.10088 -12.77339 -12.65562 -12.46350 -12.11477 -11.93197 -11.77177 -11.69540 -11.25579 -11.14794 -11.10412 -10.87420 -10.75778 -10.65156 -10.43781 -10.28595 -10.03185 -9.88641 -9.81685 -9.55823 -8.85173 -8.60628 -8.45313 -6.08840 -3.99226 2.21771 2.46957 3.29889 3.36506 3.37915 3.65851 4.08725 4.35388 4.39637 4.39940 4.64490 4.80331 4.92495 5.05250 5.14362 5.16570 5.30310 5.33779 5.35330 5.38899 5.41559 5.62664 5.65812 5.68073 5.80850 5.97838 6.03814 6.31708 6.38862 6.52145 6.63160 6.69900 6.77447 6.93008 7.03127 7.09210 7.17187 7.43509 7.66682 7.74405 7.84347 7.87403 8.40866 8.98226 9.56230 11.01094 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031396 B = 0.003314 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.613841 B = 8446.797783 C = 8670.553705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 H 0.089 0.911 4 C 0.049 3.951 5 O -0.350 6.350 6 C 0.088 3.912 7 H 0.109 0.891 8 C 0.455 3.545 9 O -0.495 6.495 10 O -0.349 6.349 11 C 0.072 3.928 12 C -0.071 4.071 13 H 0.070 0.930 14 C -0.102 4.102 15 C 0.012 3.988 16 C -0.489 4.489 17 C 0.075 3.925 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.275 1.275 21 H -0.293 1.293 22 H -0.274 1.274 23 C -0.011 4.011 24 C -0.102 4.102 25 C -0.139 4.139 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.032 0.968 35 H 0.004 0.996 36 H 0.058 0.942 37 H 0.265 0.735 38 H 0.018 0.982 39 H 0.023 0.977 40 H 0.039 0.961 41 H 0.050 0.950 42 H 0.086 0.914 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.227 4.509 15.817 22.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.148 4.148 3 H 0.107 0.893 4 C -0.028 4.028 5 O -0.268 6.268 6 C 0.029 3.971 7 H 0.126 0.874 8 C 0.296 3.704 9 O -0.381 6.381 10 O -0.265 6.265 11 C -0.001 4.001 12 C -0.089 4.089 13 H 0.089 0.911 14 C -0.140 4.140 15 C -0.025 4.025 16 C -0.508 4.508 17 C -0.127 4.127 18 N -0.529 5.529 19 Si 0.719 3.281 20 H -0.200 1.200 21 H -0.219 1.219 22 H -0.200 1.200 23 C -0.048 4.048 24 C -0.140 4.140 25 C -0.177 4.177 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.022 0.978 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.041 0.959 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.105 0.895 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.564 4.647 15.946 22.090 hybrid contribution -0.006 -0.962 -0.144 0.973 sum -14.570 3.684 15.802 21.807 Atomic orbital electron populations 1.21722 0.93308 1.02442 1.02440 1.22793 0.97004 1.00544 0.94414 0.89293 1.23764 0.83596 0.97924 0.97469 1.88998 1.29644 1.86306 1.21864 1.22171 0.90867 1.01118 0.82991 0.87377 1.23367 0.88787 0.76644 0.81579 1.90667 1.41534 1.37557 1.68374 1.86480 1.42523 1.73821 1.23711 1.23535 0.82465 0.99803 0.94288 1.21119 1.00397 0.97810 0.89624 0.91131 1.21642 0.95197 0.96950 1.00218 1.19353 0.98354 0.95025 0.89786 1.20053 1.12625 0.93045 1.25081 1.24849 0.94596 0.98286 0.95015 1.69820 1.18212 1.36050 1.28864 0.86655 0.77861 0.85641 0.77894 1.20031 1.21917 1.20003 1.19626 0.97293 0.95674 0.92220 1.21589 0.99448 0.93631 0.99342 1.22991 0.96310 0.99590 0.98825 0.92082 0.91887 0.92077 0.91411 0.88353 0.91395 0.91773 0.92848 0.94892 0.97755 0.92342 0.92555 0.96360 0.95852 0.94253 0.93138 0.89489 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.19 37.16 0.34 -0.40 16 2 C -0.13 -0.95 3.72 -88.61 -0.33 -1.28 16 3 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.05 0.39 7.17 38.21 0.27 0.67 16 5 O -0.35 -4.41 10.74 -54.84 -0.59 -5.00 16 6 C 0.09 1.02 3.96 -27.31 -0.11 0.91 16 7 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 8 C 0.46 7.04 7.06 36.00 0.25 7.30 16 9 O -0.49 -9.27 16.28 -25.38 -0.41 -9.69 16 10 O -0.35 -5.58 9.68 -39.27 -0.38 -5.96 16 11 C 0.07 1.23 4.84 37.16 0.18 1.41 16 12 C -0.07 -1.35 2.33 -90.66 -0.21 -1.56 16 13 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 14 C -0.10 -2.13 5.22 -26.63 -0.14 -2.27 16 15 C 0.01 0.30 5.96 -27.48 -0.16 0.14 16 16 C -0.49 -12.88 5.51 -98.93 -0.55 -13.42 16 17 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 18 N -0.89 -25.76 12.73 55.43 0.71 -25.05 16 19 Si 0.89 21.39 26.80 -169.99 -4.56 16.83 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 C -0.01 -0.25 5.59 -27.49 -0.15 -0.40 16 24 C -0.10 -2.08 5.15 -26.63 -0.14 -2.22 16 25 C -0.14 -1.23 6.22 -25.20 -0.16 -1.38 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.29 8.11 -51.93 -0.42 -0.14 16 29 H 0.07 0.43 8.05 -51.92 -0.42 0.01 16 30 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.19 8.13 -51.93 -0.42 0.76 16 32 H 0.06 1.05 8.13 -51.93 -0.42 0.63 16 33 H 0.05 1.15 8.14 -51.94 -0.42 0.73 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 36 H 0.06 1.58 7.08 -51.93 -0.37 1.21 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.54 5.17 -51.93 -0.27 0.27 16 40 H 0.04 0.73 7.71 -51.93 -0.40 0.32 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 0.84 7.69 -51.93 -0.40 0.44 16 43 H 0.09 0.65 7.83 -51.93 -0.41 0.25 16 LS Contribution 340.72 15.07 5.13 5.13 Total: -1.00 -30.92 340.72 -8.40 -39.32 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -7.31 Total: -5.02 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -0.99 Total: -10.57 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 0.71 Total: -25.05 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -1.38 Total: -20.65 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.56 Total: 16.83 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.92 -8.40 -39.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893024183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.037 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds