Wall clock time and date at job start Tue Mar 31 2020 05:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 110.80379 * 2 1 4 4 C 1.55000 * 110.90964 * 236.33686 * 2 1 3 5 5 O 1.44575 * 103.58710 * 204.85801 * 4 2 1 6 6 C 1.43743 * 106.86996 * 39.87776 * 5 4 2 7 7 H 1.09000 * 109.87866 * 93.17487 * 6 5 4 8 8 C 1.50700 * 109.87848 * 214.17324 * 6 5 4 9 9 O 1.20833 * 119.99923 * 3.28795 * 8 6 5 10 10 O 1.34224 * 120.00109 * 183.29337 * 8 6 5 11 11 C 1.45202 * 116.99961 * 179.97438 * 10 8 6 12 12 C 1.53004 * 109.47057 * 179.97438 * 11 10 8 13 13 H 1.08995 * 109.41446 * 304.85625 * 12 11 10 14 14 C 1.52957 * 109.35383 * 64.68247 * 12 11 10 15 15 C 1.52795 * 109.48462 * 183.53588 * 14 12 11 16 16 C 1.51271 * 108.76292 * 305.61187 * 15 14 12 17 17 C 1.37880 * 120.84867 * 231.30637 * 16 15 14 18 18 N 1.31517 * 120.00210 * 179.71833 * 17 16 15 19 19 Si 1.86800 * 120.00019 * 359.72264 * 17 16 15 20 20 H 1.48503 * 109.46845 * 269.99914 * 19 17 16 21 21 H 1.48503 * 109.47399 * 29.99403 * 19 17 16 22 22 H 1.48498 * 109.47295 * 150.00010 * 19 17 16 23 23 C 1.51265 * 118.30351 * 51.03371 * 16 15 14 24 24 C 1.52957 * 109.41407 * 184.99920 * 12 11 10 25 25 C 1.54102 * 107.42223 * 333.66865 * 6 5 4 26 26 H 1.08997 * 109.47474 * 296.36694 * 1 2 3 27 27 H 1.08996 * 109.47524 * 56.36770 * 1 2 3 28 28 H 1.09000 * 109.47476 * 176.36747 * 1 2 3 29 29 H 1.09001 * 110.61310 * 323.28098 * 4 2 1 30 30 H 1.08997 * 110.61632 * 86.11154 * 4 2 1 31 31 H 1.08997 * 109.47026 * 60.00112 * 11 10 8 32 32 H 1.09001 * 109.47314 * 299.99522 * 11 10 8 33 33 H 1.09001 * 109.48508 * 303.64991 * 14 12 11 34 34 H 1.09005 * 109.48323 * 63.67520 * 14 12 11 35 35 H 1.09001 * 109.56566 * 185.79465 * 15 14 12 36 36 H 1.09002 * 109.46585 * 65.36204 * 15 14 12 37 37 H 0.96998 * 119.99640 * 180.02562 * 18 17 16 38 38 H 1.09003 * 109.62730 * 68.61666 * 23 16 15 39 39 H 1.09004 * 109.62983 * 189.19108 * 23 16 15 40 40 H 1.09007 * 109.47940 * 56.38596 * 24 12 11 41 41 H 1.09006 * 109.48400 * 296.34924 * 24 12 11 42 42 H 1.09003 * 110.48399 * 120.62757 * 25 6 5 43 43 H 1.08996 * 110.49083 * 243.28143 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0831 -0.8026 -1.2051 5 8 3.3954 -1.2179 -0.7630 6 6 3.2718 -1.5881 0.6205 7 1 3.0837 -2.6586 0.7023 8 6 4.5349 -1.2318 1.3611 9 8 5.4309 -0.6594 0.7870 10 8 4.6647 -1.5504 2.6585 11 6 5.9086 -1.1769 3.3078 12 6 5.8722 -1.6185 4.7723 13 1 4.9890 -1.2001 5.2549 14 6 5.8134 -3.1454 4.8400 15 6 5.6881 -3.5865 6.2975 16 6 6.8185 -2.9698 7.0913 17 6 7.6222 -3.7472 7.8981 18 7 8.6038 -3.1945 8.5767 19 14 7.3169 -5.5855 8.0271 20 1 6.3680 -5.8529 9.1377 21 1 6.7393 -6.0821 6.7523 22 1 8.6004 -6.2830 8.2939 23 6 7.0486 -1.4795 6.9726 24 6 7.1280 -1.1157 5.4863 25 6 2.0825 -0.8009 1.2041 26 1 -0.3634 0.4564 0.9207 27 1 -0.3634 0.5691 -0.8556 28 1 -0.3634 -1.0256 -0.0651 29 1 1.4561 -1.6708 -1.4083 30 1 2.1555 -0.1679 -2.0882 31 1 6.0340 -0.0953 3.2578 32 1 6.7428 -1.6632 2.8020 33 1 4.9514 -3.5014 4.2758 34 1 6.7251 -3.5637 4.4132 35 1 5.7495 -4.6732 6.3566 36 1 4.7325 -3.2487 6.6984 37 1 9.1694 -3.7415 9.1440 38 1 6.2211 -0.9431 7.4370 39 1 7.9837 -1.2129 7.4652 40 1 7.1977 -0.0331 5.3801 41 1 8.0087 -1.5820 5.0445 42 1 1.3246 -1.4839 1.5880 43 1 2.4209 -0.1247 1.9891 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893024185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:04 Heat of formation + Delta-G solvation = -159.440275 kcal Electronic energy + Delta-G solvation = -22581.579380 eV Core-core repulsion = 19204.705570 eV Total energy + Delta-G solvation = -3376.873810 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.78665 -39.30228 -37.30178 -35.91203 -33.95642 -32.63182 -30.96297 -29.83567 -29.07123 -26.75394 -25.42816 -23.93463 -21.73301 -21.13978 -21.04921 -20.60225 -19.19539 -17.75181 -17.00209 -16.65276 -16.13293 -15.77337 -15.42000 -14.92869 -14.44467 -14.28532 -13.71036 -13.55849 -13.26809 -13.10348 -12.76895 -12.68685 -12.50298 -12.10978 -11.94176 -11.77162 -11.69451 -11.25245 -11.14123 -11.11954 -10.87709 -10.76890 -10.65476 -10.43906 -10.23344 -10.01606 -9.88381 -9.81724 -9.39680 -8.83283 -8.58072 -8.43095 -6.08116 -3.98564 2.22137 2.47260 3.28331 3.36759 3.37438 3.66287 4.08384 4.35323 4.39743 4.39940 4.64478 4.80412 4.92433 5.05373 5.14712 5.17064 5.31033 5.34001 5.35741 5.38542 5.42097 5.62981 5.65911 5.68751 5.80856 5.98459 6.05041 6.32386 6.38081 6.52803 6.63888 6.71229 6.79251 6.95320 7.05414 7.13114 7.20222 7.45275 7.68431 7.75012 7.84630 7.87793 8.41719 8.99340 9.56823 11.01602 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031349 B = 0.003317 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.953023 B = 8440.287627 C = 8664.294049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 H 0.089 0.911 4 C 0.049 3.951 5 O -0.349 6.349 6 C 0.088 3.912 7 H 0.109 0.891 8 C 0.455 3.545 9 O -0.495 6.495 10 O -0.349 6.349 11 C 0.072 3.928 12 C -0.071 4.071 13 H 0.070 0.930 14 C -0.101 4.101 15 C -0.021 4.021 16 C -0.486 4.486 17 C 0.074 3.926 18 N -0.892 5.892 19 Si 0.887 3.113 20 H -0.279 1.279 21 H -0.264 1.264 22 H -0.291 1.291 23 C 0.011 3.989 24 C -0.102 4.102 25 C -0.139 4.139 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.049 0.951 35 H 0.033 0.967 36 H 0.016 0.984 37 H 0.264 0.736 38 H 0.004 0.996 39 H 0.058 0.942 40 H 0.032 0.968 41 H 0.053 0.947 42 H 0.094 0.906 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.199 4.344 -15.844 22.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.147 4.147 3 H 0.107 0.893 4 C -0.028 4.028 5 O -0.268 6.268 6 C 0.028 3.972 7 H 0.126 0.874 8 C 0.296 3.704 9 O -0.382 6.382 10 O -0.265 6.265 11 C -0.001 4.001 12 C -0.090 4.090 13 H 0.088 0.912 14 C -0.139 4.139 15 C -0.059 4.059 16 C -0.505 4.505 17 C -0.128 4.128 18 N -0.530 5.530 19 Si 0.715 3.285 20 H -0.205 1.205 21 H -0.189 1.189 22 H -0.217 1.217 23 C -0.026 4.026 24 C -0.140 4.140 25 C -0.177 4.177 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.034 0.966 37 H 0.074 0.926 38 H 0.023 0.977 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.071 0.929 42 H 0.113 0.887 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.537 4.476 -15.975 22.058 hybrid contribution 0.001 -0.922 0.166 0.936 sum -14.536 3.554 -15.809 21.768 Atomic orbital electron populations 1.21721 0.93303 1.02400 1.02498 1.22782 0.97005 1.00536 0.94406 0.89287 1.23793 0.83596 0.97905 0.97484 1.89040 1.29712 1.86300 1.21741 1.22164 0.90864 1.01146 0.82991 0.87392 1.23372 0.88831 0.76580 0.81607 1.90668 1.41338 1.37728 1.68417 1.86478 1.42476 1.74056 1.23509 1.23538 0.82457 0.99798 0.94294 1.21125 1.00371 0.97933 0.89546 0.91153 1.21500 0.99385 0.93547 0.99458 1.19751 0.97138 0.96837 0.92161 1.20072 1.12797 0.93071 1.24586 1.24860 0.94586 0.98304 0.95080 1.69838 1.18364 1.35955 1.28871 0.86683 0.77369 0.85815 0.78621 1.20452 1.18919 1.21709 1.19363 0.98352 0.95112 0.89780 1.21639 0.95193 0.96943 1.00211 1.22987 0.96299 0.99599 0.98827 0.91850 0.92094 0.92089 0.91414 0.88359 0.91798 0.91401 0.94304 0.93231 0.94850 0.96558 0.92647 0.97737 0.92330 0.94914 0.92868 0.88707 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.19 37.15 0.34 -0.40 16 2 C -0.13 -0.95 3.73 -88.61 -0.33 -1.28 16 3 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 4 C 0.05 0.39 7.18 38.21 0.27 0.67 16 5 O -0.35 -4.42 10.75 -54.85 -0.59 -5.01 16 6 C 0.09 1.02 3.95 -27.31 -0.11 0.91 16 7 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 8 C 0.45 7.06 7.06 36.01 0.25 7.31 16 9 O -0.49 -9.30 16.27 -25.39 -0.41 -9.71 16 10 O -0.35 -5.60 9.68 -39.24 -0.38 -5.98 16 11 C 0.07 1.24 4.83 37.16 0.18 1.42 16 12 C -0.07 -1.36 2.34 -90.66 -0.21 -1.57 16 13 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 14 C -0.10 -2.07 5.13 -26.86 -0.14 -2.21 16 15 C -0.02 -0.50 5.56 -27.71 -0.15 -0.65 16 16 C -0.49 -12.80 5.52 -98.92 -0.55 -13.34 16 17 C 0.07 2.03 5.46 -17.82 -0.10 1.93 16 18 N -0.89 -25.78 12.73 55.43 0.71 -25.07 16 19 Si 0.89 21.11 27.54 -169.99 -4.68 16.43 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.26 -6.07 6.09 56.52 0.34 -5.72 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 C 0.01 0.28 5.97 -27.49 -0.16 0.11 16 24 C -0.10 -2.13 5.21 -26.64 -0.14 -2.27 16 25 C -0.14 -1.23 6.22 -25.20 -0.16 -1.39 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.28 8.09 -51.93 -0.42 -0.14 16 29 H 0.07 0.43 8.01 -51.93 -0.42 0.01 16 30 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 1.05 8.13 -51.93 -0.42 0.63 16 32 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 33 H 0.04 0.72 7.71 -51.93 -0.40 0.32 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.03 0.77 4.59 -51.93 -0.24 0.54 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 39 H 0.06 1.59 7.07 -51.93 -0.37 1.22 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.09 0.66 7.86 -51.93 -0.41 0.25 16 43 H 0.09 0.84 7.69 -51.93 -0.40 0.44 16 LS Contribution 339.80 15.07 5.12 5.12 Total: -1.00 -30.93 339.80 -8.57 -39.50 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -7.34 Total: -4.51 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -1.00 Total: -10.77 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.71 Total: -25.07 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -1.38 Total: -20.70 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.68 Total: 16.43 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.93 -8.57 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893024185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.939 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds