Wall clock time and date at job start Tue Mar 31 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21590 * 120.00297 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99768 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99449 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.46592 * 179.97438 * 15 14 12 17 17 H 1.09004 * 110.32771 * 60.80221 * 16 15 14 18 18 C 1.54480 * 110.36901 * 183.16481 * 16 15 14 19 19 C 1.54513 * 104.05856 * 142.81143 * 18 16 15 20 20 C 1.54479 * 104.06378 * 0.02562 * 19 18 16 21 21 H 1.08998 * 110.46443 * 94.89650 * 20 19 18 22 22 C 1.52995 * 110.37038 * 217.18976 * 20 19 18 23 23 C 1.53007 * 117.49897 * 245.57990 * 22 20 19 24 24 C 1.53003 * 117.49660 * 176.92417 * 22 20 19 25 25 O 1.44416 * 110.37411 * 298.54615 * 16 15 14 26 26 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 28 28 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 31 31 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 32 32 H 0.96992 * 119.99896 * 0.02562 * 14 12 11 33 33 H 1.09000 * 109.47319 * 299.99842 * 15 14 12 34 34 H 1.08996 * 109.47236 * 60.00639 * 15 14 12 35 35 H 1.08995 * 110.51171 * 261.45558 * 18 16 15 36 36 H 1.09005 * 110.51004 * 24.16876 * 18 16 15 37 37 H 1.08998 * 110.51039 * 241.35111 * 19 18 16 38 38 H 1.09002 * 110.50998 * 118.64949 * 19 18 16 39 39 H 1.09001 * 115.55337 * 31.24977 * 22 20 19 40 40 H 1.09004 * 117.49621 * 0.02562 * 23 22 20 41 41 H 1.08997 * 117.49782 * 145.02121 * 23 22 20 42 42 H 1.09004 * 117.49416 * 214.97408 * 24 22 20 43 43 H 1.08993 * 117.49989 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4864 -2.6366 -0.0022 12 6 6.1603 -3.8038 -0.0028 13 8 5.5524 -4.8569 -0.0029 14 7 7.5081 -3.8038 -0.0034 15 6 8.2406 -5.0726 -0.0035 16 6 9.7448 -4.7930 -0.0048 17 1 10.0267 -4.2333 0.8870 18 6 10.5377 -6.1164 -0.0849 19 6 11.7451 -5.7766 -0.9871 20 6 11.5393 -4.2879 -1.3447 21 1 12.0984 -3.6506 -0.6597 22 6 11.9696 -4.0227 -2.7888 23 6 13.1761 -3.1080 -3.0098 24 6 11.7666 -2.6092 -3.3381 25 8 10.1200 -4.0655 -1.1946 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8745 -0.6801 -0.8911 29 1 3.6584 -3.1503 0.8892 30 1 3.6578 -3.1506 -0.8907 31 1 5.9715 -1.7966 -0.0025 32 1 7.9931 -2.9638 -0.0030 33 1 7.9776 -5.6441 0.8867 34 1 7.9769 -5.6443 -0.8933 35 1 10.8748 -6.4202 0.9060 36 1 9.9297 -6.8989 -0.5392 37 1 11.7343 -6.3911 -1.8872 38 1 12.6793 -5.9125 -0.4421 39 1 11.8360 -4.8552 -3.4796 40 1 13.6634 -2.6955 -2.1263 41 1 13.8359 -3.3384 -3.8462 42 1 11.4998 -2.5118 -4.3905 43 1 11.3261 -1.8684 -2.6709 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894129935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:44 Heat of formation + Delta-G solvation = -63.454734 kcal Electronic energy + Delta-G solvation = -21633.994300 eV Core-core repulsion = 18293.575486 eV Total energy + Delta-G solvation = -3340.418813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.28365 -39.37778 -37.17076 -35.15063 -34.31146 -32.74959 -32.48122 -30.69244 -29.52528 -26.19598 -24.48049 -22.80417 -22.58111 -21.51486 -20.89085 -20.73907 -20.46221 -17.99269 -17.00682 -16.79688 -16.57979 -16.15026 -15.45858 -15.13064 -14.97159 -14.33739 -14.10730 -13.99769 -13.69460 -13.64511 -13.26378 -12.69346 -12.55987 -12.25472 -12.09197 -11.90796 -11.72208 -11.64785 -11.42994 -11.15804 -11.05145 -10.68925 -10.44487 -10.33781 -10.21724 -10.08251 -9.93423 -9.70852 -9.28013 -9.00101 -8.58803 -8.30319 -6.07296 -4.06941 2.96094 3.14885 3.28415 3.35734 3.37379 3.60395 3.76805 4.05441 4.17018 4.41300 4.45247 4.47023 4.60307 4.60712 4.73322 4.80660 4.93888 4.98930 5.11337 5.23183 5.25780 5.27016 5.39852 5.52648 5.55673 5.63281 5.64565 5.74214 5.78209 5.84835 6.14554 6.30910 6.49282 6.62028 6.66845 6.89216 7.11975 7.30273 7.37312 7.71960 8.37589 8.50878 8.96791 8.99894 9.53049 11.05834 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022155 B = 0.002842 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.492020 B = 9850.269232 C =10841.724016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.149 3.851 11 N -0.742 5.742 12 C 0.700 3.300 13 O -0.597 6.597 14 N -0.749 5.749 15 C 0.150 3.850 16 C 0.062 3.938 17 H 0.075 0.925 18 C -0.148 4.148 19 C -0.146 4.146 20 C 0.104 3.896 21 H 0.069 0.931 22 C -0.153 4.153 23 C -0.175 4.175 24 C -0.166 4.166 25 O -0.357 6.357 26 H 0.264 0.736 27 H 0.021 0.979 28 H 0.017 0.983 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.391 0.609 32 H 0.397 0.603 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.417 -8.145 -2.063 31.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.026 3.974 11 N -0.396 5.396 12 C 0.399 3.601 13 O -0.476 6.476 14 N -0.405 5.405 15 C 0.025 3.975 16 C 0.004 3.996 17 H 0.093 0.907 18 C -0.186 4.186 19 C -0.184 4.184 20 C 0.047 3.953 21 H 0.087 0.913 22 C -0.171 4.171 23 C -0.212 4.212 24 C -0.203 4.203 25 O -0.276 6.276 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.224 0.776 32 H 0.230 0.770 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.127 0.873 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 29.500 -8.891 -2.200 30.889 hybrid contribution 0.942 1.590 0.086 1.851 sum 30.443 -7.300 -2.115 31.377 Atomic orbital electron populations 1.69908 1.06283 1.26992 1.50609 1.25002 0.94766 0.99137 0.94435 0.86742 0.80251 0.83534 0.78482 1.20245 1.21329 1.19093 1.20932 0.88677 0.94901 1.51425 0.90581 1.19797 0.97890 0.91500 0.96782 1.21362 0.74839 0.99770 1.01449 1.45502 1.08874 1.06260 1.78962 1.16021 0.81232 0.84821 0.77999 1.90898 1.67806 1.30594 1.58327 1.44975 1.04937 1.09086 1.81532 1.21189 0.87305 0.86154 1.02880 1.23271 0.94690 0.92400 0.89250 0.90699 1.22921 0.96777 0.97940 1.00967 1.22955 0.98587 0.96332 1.00478 1.22491 0.83015 0.95263 0.94581 0.91319 1.22273 1.03230 0.95327 0.96254 1.23012 0.91165 1.03554 1.03516 1.22872 0.98593 0.96706 1.02093 1.89245 1.22358 1.71710 1.44320 0.92596 0.96049 0.96451 0.92181 0.92210 0.77586 0.76968 0.90445 0.91049 0.90096 0.89925 0.90316 0.90430 0.87301 0.88721 0.88488 0.88623 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 7 C -0.52 -14.87 9.66 -34.44 -0.33 -15.20 16 8 H 0.08 2.35 7.99 -52.49 -0.42 1.93 16 9 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 10 C 0.15 3.18 5.61 -4.04 -0.02 3.16 16 11 N -0.74 -13.10 5.56 -65.22 -0.36 -13.46 16 12 C 0.70 12.50 8.57 -86.91 -0.74 11.76 16 13 O -0.60 -13.12 16.34 5.29 0.09 -13.03 16 14 N -0.75 -9.92 5.49 -65.22 -0.36 -10.27 16 15 C 0.15 1.70 5.31 -4.04 -0.02 1.67 16 16 C 0.06 0.53 3.36 -25.95 -0.09 0.44 16 17 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 18 C -0.15 -0.97 6.63 -25.16 -0.17 -1.13 16 19 C -0.15 -0.89 6.63 -25.16 -0.17 -1.05 16 20 C 0.10 0.79 3.47 -25.96 -0.09 0.70 16 21 H 0.07 0.47 7.95 -51.93 -0.41 0.06 16 22 C -0.15 -1.13 5.46 -90.62 -0.49 -1.62 16 23 C -0.18 -1.06 10.19 -26.69 -0.27 -1.33 16 24 C -0.17 -1.27 10.21 -26.69 -0.27 -1.54 16 25 O -0.36 -3.60 10.85 -35.23 -0.38 -3.98 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 28 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 29 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 31 H 0.39 5.78 8.49 -40.82 -0.35 5.43 16 32 H 0.40 4.37 8.43 -40.82 -0.34 4.03 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.56 7.86 -51.93 -0.41 0.15 16 37 H 0.08 0.47 7.66 -51.93 -0.40 0.08 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.11 0.79 7.82 -51.93 -0.41 0.38 16 40 H 0.09 0.51 8.07 -51.93 -0.42 0.09 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 353.87 15.07 5.33 5.33 Total: -1.00 -34.09 353.87 -9.78 -43.87 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -7.31 Total: 4.70 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -2.88 Total: -2.90 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.05 Total: -50.68 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.30 Total: -17.02 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.09 -9.78 -43.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894129935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.585 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds