Wall clock time and date at job start Tue Mar 31 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00230 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00341 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99962 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00449 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99570 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46843 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46928 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99854 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99953 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00097 * 180.27545 * 12 11 10 15 15 C 1.46500 * 120.00431 * 179.72742 * 14 12 11 16 16 C 1.52999 * 109.47528 * 180.02562 * 15 14 12 17 17 H 1.09008 * 110.54722 * 305.69687 * 16 15 14 18 18 C 1.54998 * 110.61786 * 182.82397 * 16 15 14 19 19 C 1.54990 * 102.00967 * 204.58940 * 18 16 15 20 20 C 1.54108 * 104.24929 * 20.66894 * 19 18 16 21 21 H 1.09006 * 109.87498 * 242.73884 * 20 19 18 22 22 C 1.52992 * 110.00349 * 121.65935 * 20 19 18 23 23 C 1.52997 * 117.50039 * 249.25909 * 22 20 19 24 24 C 1.53001 * 117.49793 * 180.63354 * 22 20 19 25 25 O 1.43736 * 107.29339 * 2.16165 * 20 19 18 26 26 H 0.97005 * 120.00032 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47199 * 60.00717 * 9 7 2 28 28 H 1.08997 * 109.47846 * 300.00091 * 9 7 2 29 29 H 1.08998 * 109.47202 * 60.00416 * 10 9 7 30 30 H 1.08997 * 109.47419 * 300.00314 * 10 9 7 31 31 H 0.97000 * 120.00410 * 0.02562 * 11 10 9 32 32 H 0.97000 * 120.00112 * 359.73180 * 14 12 11 33 33 H 1.09009 * 109.46712 * 300.00517 * 15 14 12 34 34 H 1.08998 * 109.47207 * 59.99494 * 15 14 12 35 35 H 1.09001 * 110.90678 * 322.66765 * 18 16 15 36 36 H 1.08996 * 110.90935 * 86.27108 * 18 16 15 37 37 H 1.08994 * 110.34349 * 262.02703 * 19 18 16 38 38 H 1.09001 * 110.67957 * 139.47371 * 19 18 16 39 39 H 1.09005 * 115.55360 * 34.96687 * 22 20 19 40 40 H 1.09004 * 117.50008 * 359.97438 * 23 22 20 41 41 H 1.08998 * 117.50556 * 145.02483 * 23 22 20 42 42 H 1.09001 * 117.50097 * 214.97906 * 24 22 20 43 43 H 1.08997 * 117.49841 * 0.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4865 -2.6365 -0.0009 12 6 6.1604 -3.8037 -0.0003 13 8 5.5524 -4.8567 -0.0003 14 7 7.5081 -3.8038 0.0053 15 6 8.2406 -5.0724 0.0121 16 6 9.7448 -4.7929 0.0182 17 1 10.0160 -4.1396 -0.8112 18 6 10.5465 -6.1179 -0.0461 19 6 11.8959 -5.7100 0.5982 20 6 11.5603 -4.4459 1.4132 21 1 12.1171 -3.5942 1.0221 22 6 11.9112 -4.6645 2.8862 23 6 10.7529 -4.7678 3.8805 24 6 11.6316 -3.5154 3.8570 25 8 10.1488 -4.2115 1.2764 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6805 0.8890 28 1 3.8745 -0.6800 -0.8911 29 1 3.6578 -3.1506 -0.8907 30 1 3.6584 -3.1502 0.8892 31 1 5.9715 -1.7965 -0.0006 32 1 7.9931 -2.9637 0.0050 33 1 7.9734 -5.6415 0.9026 34 1 7.9810 -5.6466 -0.8773 35 1 10.0575 -6.8972 0.5385 36 1 10.6865 -6.4382 -1.0785 37 1 12.6308 -5.4823 -0.1738 38 1 12.2640 -6.4997 1.2532 39 1 12.7920 -5.2786 3.0736 40 1 9.7409 -4.6796 3.4852 41 1 10.8714 -5.4500 4.7223 42 1 12.3282 -3.3738 4.6833 43 1 11.1974 -2.6039 3.4463 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894129936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:46 Heat of formation + Delta-G solvation = -63.024431 kcal Electronic energy + Delta-G solvation = -21793.708053 eV Core-core repulsion = 18453.307899 eV Total energy + Delta-G solvation = -3340.400154 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.35439 -39.41688 -36.91440 -35.14691 -34.31830 -32.75456 -32.52617 -30.71026 -29.54778 -26.27402 -24.49223 -22.71878 -22.42873 -21.67921 -20.75445 -20.66836 -20.51248 -18.03529 -17.03438 -16.80999 -16.26901 -15.99003 -15.78020 -15.30396 -14.90524 -14.34718 -14.06156 -13.98189 -13.70259 -13.59797 -13.14746 -12.65924 -12.56775 -12.34591 -12.15565 -11.82456 -11.65209 -11.58012 -11.43677 -11.17401 -11.15126 -10.52401 -10.38888 -10.34440 -10.22448 -9.94041 -9.91614 -9.71793 -9.28659 -9.02417 -8.59364 -8.31947 -6.07790 -4.07504 2.98386 3.27786 3.33817 3.35404 3.37096 3.52083 3.59732 4.10960 4.24137 4.40827 4.46949 4.47287 4.66830 4.70589 4.71974 4.84366 4.96272 5.07409 5.13172 5.25258 5.25760 5.39387 5.44559 5.52229 5.60213 5.62650 5.69665 5.78532 5.87205 6.04475 6.13473 6.29985 6.54564 6.62093 6.65537 6.87859 7.10187 7.29407 7.35619 7.71347 8.35831 8.50034 8.95807 8.98571 9.52520 11.05333 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024258 B = 0.002839 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.980270 B = 9858.820054 C =10470.765000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.149 3.851 11 N -0.742 5.742 12 C 0.700 3.300 13 O -0.597 6.597 14 N -0.750 5.750 15 C 0.149 3.851 16 C 0.065 3.935 17 H 0.077 0.923 18 C -0.145 4.145 19 C -0.147 4.147 20 C 0.106 3.894 21 H 0.071 0.929 22 C -0.164 4.164 23 C -0.164 4.164 24 C -0.176 4.176 25 O -0.361 6.361 26 H 0.264 0.736 27 H 0.021 0.979 28 H 0.017 0.983 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.391 0.609 32 H 0.396 0.604 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.500 -9.073 2.140 30.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.026 3.974 11 N -0.396 5.396 12 C 0.399 3.601 13 O -0.476 6.476 14 N -0.406 5.406 15 C 0.025 3.975 16 C 0.007 3.993 17 H 0.094 0.906 18 C -0.183 4.183 19 C -0.185 4.185 20 C 0.048 3.952 21 H 0.089 0.911 22 C -0.182 4.182 23 C -0.201 4.201 24 C -0.213 4.213 25 O -0.280 6.280 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.224 0.776 32 H 0.229 0.771 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 28.589 -9.833 2.296 30.320 hybrid contribution 1.026 1.643 -0.130 1.941 sum 29.614 -8.191 2.166 30.802 Atomic orbital electron populations 1.69908 1.06285 1.27002 1.50586 1.25001 0.94765 0.99137 0.94427 0.86743 0.80280 0.83542 0.78454 1.20267 1.21309 1.19079 1.20930 0.88675 0.94904 1.51450 0.90579 1.19798 0.97894 0.91488 0.96778 1.21365 0.74818 0.99782 1.01458 1.45507 1.08888 1.06253 1.78940 1.16016 0.81220 0.84828 0.78007 1.90902 1.67786 1.30592 1.58276 1.45011 1.04987 1.09043 1.81609 1.21139 0.87315 0.86114 1.02979 1.23407 0.94403 0.93989 0.87489 0.90559 1.23102 0.95276 0.97756 1.02208 1.22980 0.97882 0.98031 0.99609 1.22158 0.82829 0.96578 0.93642 0.91083 1.22506 1.00992 1.03882 0.90832 1.22885 0.96951 1.00093 1.00127 1.22936 1.03499 0.93494 1.01380 1.88944 1.22423 1.78610 1.38061 0.92588 0.96026 0.96483 0.92197 0.92179 0.77590 0.77053 0.90949 0.90377 0.89861 0.89785 0.90611 0.90110 0.87117 0.87460 0.89250 0.89069 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 7 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 8 H 0.08 2.35 7.99 -52.49 -0.42 1.93 16 9 C -0.02 -0.51 4.16 -27.88 -0.12 -0.62 16 10 C 0.15 3.16 5.61 -4.04 -0.02 3.14 16 11 N -0.74 -12.93 5.56 -65.22 -0.36 -13.29 16 12 C 0.70 12.31 8.57 -86.92 -0.74 11.56 16 13 O -0.60 -12.97 16.34 5.28 0.09 -12.89 16 14 N -0.75 -9.64 5.56 -65.22 -0.36 -10.00 16 15 C 0.15 1.64 5.42 -4.04 -0.02 1.62 16 16 C 0.06 0.53 3.36 -25.68 -0.09 0.44 16 17 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 18 C -0.15 -0.92 6.60 -24.62 -0.16 -1.08 16 19 C -0.15 -0.84 6.65 -25.10 -0.17 -1.01 16 20 C 0.11 0.79 3.78 -26.16 -0.10 0.69 16 21 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 22 C -0.16 -1.21 5.55 -90.63 -0.50 -1.71 16 23 C -0.16 -1.42 9.88 -26.73 -0.26 -1.68 16 24 C -0.18 -1.40 10.21 -26.73 -0.27 -1.67 16 25 O -0.36 -3.46 9.28 -35.23 -0.33 -3.78 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 28 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 31 H 0.39 5.69 8.49 -40.82 -0.35 5.34 16 32 H 0.40 4.17 8.49 -40.82 -0.35 3.83 16 33 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.42 7.60 -51.93 -0.39 0.03 16 39 H 0.11 0.66 7.99 -51.93 -0.41 0.24 16 40 H 0.11 1.15 7.06 -51.93 -0.37 0.78 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 352.16 15.07 5.31 5.31 Total: -1.00 -33.77 352.16 -9.74 -43.50 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.29 Total: 5.03 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -2.89 Total: -3.62 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.05 Total: -50.19 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.24 Total: -16.67 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.77 -9.74 -43.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894129936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.523 kcal (2) G-P(sol) polarization free energy of solvation -33.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds