Wall clock time and date at job start Tue Mar 31 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.47415 * 179.97438 * 10 9 7 12 12 C 1.34774 * 119.99815 * 179.97438 * 11 10 9 13 13 O 1.21579 * 120.00514 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99545 * 180.02562 * 12 11 10 15 15 C 1.46496 * 120.00005 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47242 * 179.97438 * 15 14 12 17 17 H 1.08999 * 110.27747 * 305.70077 * 16 15 14 18 18 C 1.54946 * 110.30847 * 183.60739 * 16 15 14 19 19 C 1.55310 * 100.94438 * 204.64339 * 18 16 15 20 20 C 1.54383 * 102.25033 * 34.13212 * 19 18 16 21 21 H 1.08999 * 109.83092 * 98.15876 * 20 19 18 22 22 C 1.53000 * 109.83299 * 219.13417 * 20 19 18 23 23 C 1.53000 * 117.49760 * 248.75264 * 22 20 19 24 24 C 1.52999 * 117.50432 * 180.08905 * 22 20 19 25 25 O 1.43376 * 107.61152 * 338.56060 * 20 19 18 26 26 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 27 27 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 28 28 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 29 29 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 30 30 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 31 31 H 0.96996 * 119.99617 * 0.02562 * 11 10 9 32 32 H 0.97005 * 120.00189 * 359.97438 * 14 12 11 33 33 H 1.09004 * 109.47001 * 299.99906 * 15 14 12 34 34 H 1.09006 * 109.47025 * 59.99303 * 15 14 12 35 35 H 1.09002 * 111.13057 * 322.56076 * 18 16 15 36 36 H 1.08999 * 111.12582 * 86.72453 * 18 16 15 37 37 H 1.08996 * 110.85419 * 152.32398 * 19 18 16 38 38 H 1.09007 * 110.84489 * 275.74321 * 19 18 16 39 39 H 1.09003 * 115.54925 * 34.41224 * 22 20 19 40 40 H 1.08996 * 117.50163 * 359.97438 * 23 22 20 41 41 H 1.09002 * 117.50007 * 145.02101 * 23 22 20 42 42 H 1.08998 * 117.49968 * 214.97959 * 24 22 20 43 43 H 1.08994 * 117.49364 * 359.97298 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 7 1.5128 -4.9308 0.0228 12 6 2.1867 -6.0980 0.0275 13 8 3.4025 -6.0980 0.0261 14 7 1.5127 -7.2651 0.0327 15 6 2.2452 -8.5339 0.0384 16 6 1.2509 -9.6967 0.0441 17 1 0.5522 -9.5922 0.8742 18 6 2.0038 -11.0475 0.1416 19 6 0.9677 -12.0096 -0.5009 20 6 0.3146 -11.1162 -1.5774 21 1 0.7695 -11.3141 -2.5479 22 6 -1.1886 -11.3940 -1.6405 23 6 -1.7272 -12.0852 -2.8947 24 6 -2.0119 -10.6001 -2.6568 25 8 0.5395 -9.7507 -1.2026 26 1 -0.4850 0.8401 -0.0041 27 1 0.6241 -2.5528 0.9015 28 1 0.6247 -2.5609 -0.8785 29 1 2.8719 -3.6083 -0.8736 30 1 2.8719 -3.6004 0.9064 31 1 0.5428 -4.9308 0.0227 32 1 0.5427 -7.2651 0.0334 33 1 2.8719 -8.5956 -0.8514 34 1 2.8719 -8.5876 0.9286 35 1 2.9286 -11.0244 -0.4348 36 1 2.1972 -11.3154 1.1803 37 1 1.4642 -12.8662 -0.9568 38 1 0.2327 -12.3358 0.2350 39 1 -1.6621 -11.6373 -0.6893 40 1 -1.0107 -12.3416 -3.6751 41 1 -2.5553 -12.7827 -2.7687 42 1 -3.0270 -10.3212 -2.3743 43 1 -1.4826 -9.8795 -3.2801 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894129937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:49 Heat of formation + Delta-G solvation = -68.519843 kcal Electronic energy + Delta-G solvation = -21557.105876 eV Core-core repulsion = 18216.467423 eV Total energy + Delta-G solvation = -3340.638453 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.26552 -39.30345 -37.07391 -35.02176 -34.23410 -32.78181 -32.48878 -30.51882 -29.13806 -26.04424 -24.40267 -22.77436 -22.46756 -21.86978 -20.96524 -20.46595 -20.38009 -17.98283 -17.19343 -16.64074 -16.32900 -15.88411 -15.36027 -14.98310 -14.95147 -14.46524 -14.17986 -13.75623 -13.51417 -13.36582 -13.19606 -12.61316 -12.49022 -12.24916 -12.07086 -11.83361 -11.70283 -11.57431 -11.23334 -11.12718 -11.01137 -10.62938 -10.57857 -10.38184 -10.26796 -9.87360 -9.79044 -9.50416 -9.19788 -8.92592 -8.44001 -8.16244 -6.05383 -4.07620 3.04902 3.21464 3.31353 3.38825 3.44620 3.68625 3.79103 4.09027 4.12131 4.37969 4.44910 4.59644 4.66585 4.73480 4.82446 4.86998 4.96851 5.04250 5.09989 5.31754 5.32298 5.34275 5.39524 5.46465 5.60005 5.65640 5.71692 5.80290 5.88224 5.91905 6.36809 6.46484 6.65584 6.79224 6.84540 7.08866 7.33810 7.63092 7.69141 7.94523 8.31336 8.52943 8.97991 9.09041 9.56882 11.06407 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027259 B = 0.002560 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.935161 B =10933.578907 C =11760.977748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.699 3.301 13 O -0.602 6.602 14 N -0.749 5.749 15 C 0.145 3.855 16 C 0.068 3.932 17 H 0.077 0.923 18 C -0.149 4.149 19 C -0.146 4.146 20 C 0.110 3.890 21 H 0.080 0.920 22 C -0.169 4.169 23 C -0.177 4.177 24 C -0.165 4.165 25 O -0.363 6.363 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.393 0.607 32 H 0.397 0.603 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 -27.777 -1.469 28.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.018 3.982 11 N -0.392 5.392 12 C 0.398 3.602 13 O -0.481 6.481 14 N -0.406 5.406 15 C 0.020 3.980 16 C 0.010 3.990 17 H 0.095 0.905 18 C -0.187 4.187 19 C -0.184 4.184 20 C 0.052 3.948 21 H 0.098 0.902 22 C -0.187 4.187 23 C -0.214 4.214 24 C -0.202 4.202 25 O -0.282 6.282 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.226 0.774 32 H 0.231 0.769 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.122 0.878 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.421 -27.444 -1.586 27.597 hybrid contribution -0.584 0.718 0.128 0.935 sum -3.005 -26.726 -1.458 26.934 Atomic orbital electron populations 1.69972 1.06086 1.26690 1.50648 1.25007 0.94894 0.99408 0.95083 0.86457 0.80188 0.83358 0.77565 1.19571 1.20966 1.20973 1.21104 0.93313 0.90372 1.50962 0.92164 1.19331 0.94280 0.91103 0.97811 1.21575 0.95613 0.80470 1.00581 1.45515 1.09843 1.05310 1.78563 1.16054 0.85598 0.80519 0.77995 1.90875 1.11822 1.86749 1.58647 1.45006 1.09603 1.04418 1.81561 1.21247 0.93305 0.80759 1.02718 1.23250 0.93230 0.94752 0.87725 0.90516 1.23250 0.99140 0.93658 1.02635 1.23136 0.98380 0.98650 0.98188 1.22275 0.92375 0.81936 0.98217 0.90190 1.22687 0.95116 1.06006 0.94912 1.22977 1.03378 0.96027 0.99025 1.22855 1.00851 0.94053 1.02453 1.88574 1.76518 1.24679 1.38461 0.92953 0.95974 0.95956 0.92838 0.92848 0.77387 0.76943 0.91193 0.90615 0.89745 0.89446 0.89867 0.90246 0.87753 0.88748 0.88698 0.88767 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 9 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 10 C 0.14 3.14 5.61 -4.04 -0.02 3.12 16 11 N -0.74 -13.86 5.56 -65.22 -0.36 -14.22 16 12 C 0.70 13.02 8.57 -86.92 -0.74 12.27 16 13 O -0.60 -13.54 16.34 5.30 0.09 -13.46 16 14 N -0.75 -10.44 5.55 -65.23 -0.36 -10.80 16 15 C 0.14 1.71 5.38 -4.04 -0.02 1.69 16 16 C 0.07 0.61 3.47 -25.70 -0.09 0.52 16 17 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 18 C -0.15 -0.97 6.57 -24.48 -0.16 -1.13 16 19 C -0.15 -0.86 6.54 -24.78 -0.16 -1.03 16 20 C 0.11 0.87 3.71 -26.01 -0.10 0.78 16 21 H 0.08 0.64 7.93 -51.93 -0.41 0.23 16 22 C -0.17 -1.26 5.37 -90.62 -0.49 -1.75 16 23 C -0.18 -1.16 10.19 -26.69 -0.27 -1.43 16 24 C -0.17 -1.32 10.20 -26.69 -0.27 -1.60 16 25 O -0.36 -3.81 10.65 -35.23 -0.38 -4.18 16 26 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.39 6.41 8.49 -40.82 -0.35 6.06 16 32 H 0.40 4.69 8.49 -40.82 -0.35 4.35 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.42 7.66 -51.92 -0.40 0.02 16 39 H 0.10 0.73 7.85 -51.93 -0.41 0.32 16 40 H 0.09 0.57 8.07 -51.93 -0.42 0.15 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 357.80 15.07 5.39 5.39 Total: -1.00 -33.44 357.80 -10.15 -43.59 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.36 Total: 4.66 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -2.88 Total: -1.85 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.01 Total: -50.83 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.29 Total: -17.64 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.44 -10.15 -43.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894129937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.933 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds