Wall clock time and date at job start Tue Mar 31 2020 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99817 * 2 1 4 4 H 1.48500 * 109.47421 * 270.00598 * 3 2 1 5 5 H 1.48499 * 109.46677 * 30.00528 * 3 2 1 6 6 H 1.48500 * 109.46883 * 150.00227 * 3 2 1 7 7 C 1.37870 * 120.00418 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00018 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00216 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46839 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.34775 * 120.00490 * 179.97438 * 11 10 9 13 13 O 1.21588 * 119.99460 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00259 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99412 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46685 * 180.02562 * 15 14 12 17 17 H 1.09004 * 109.82554 * 59.43214 * 16 15 14 18 18 C 1.54381 * 109.90844 * 180.36539 * 16 15 14 19 19 C 1.55310 * 102.25721 * 140.91045 * 18 16 15 20 20 C 1.54945 * 100.93760 * 325.87268 * 19 18 16 21 21 H 1.09002 * 110.39307 * 277.48012 * 20 19 18 22 22 C 1.53006 * 110.30985 * 155.35935 * 20 19 18 23 23 C 1.53000 * 117.49776 * 182.82972 * 22 20 19 24 24 C 1.52997 * 117.49537 * 251.45426 * 22 20 19 25 25 O 1.43237 * 109.83125 * 298.54693 * 16 15 14 26 26 H 0.96997 * 120.00404 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47106 * 60.00091 * 9 7 2 28 28 H 1.08998 * 109.46777 * 299.99701 * 9 7 2 29 29 H 1.08998 * 109.47732 * 60.00005 * 10 9 7 30 30 H 1.08998 * 109.47160 * 299.99427 * 10 9 7 31 31 H 0.97005 * 119.99893 * 0.02562 * 11 10 9 32 32 H 0.96993 * 120.00421 * 0.02562 * 14 12 11 33 33 H 1.08998 * 109.47770 * 60.00300 * 15 14 12 34 34 H 1.09001 * 109.47101 * 299.99580 * 15 14 12 35 35 H 1.08997 * 110.85158 * 259.10567 * 18 16 15 36 36 H 1.09005 * 110.84599 * 22.51906 * 18 16 15 37 37 H 1.08989 * 111.12755 * 207.94925 * 19 18 16 38 38 H 1.08999 * 111.11830 * 83.78290 * 19 18 16 39 39 H 1.09002 * 115.56020 * 37.13554 * 22 20 19 40 40 H 1.08990 * 117.49990 * 359.97438 * 23 22 20 41 41 H 1.09004 * 117.49237 * 214.97568 * 23 22 20 42 42 H 1.08999 * 117.49685 * 145.02116 * 24 22 20 43 43 H 1.08999 * 117.52022 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 7 5.4866 -2.6364 -0.0022 12 6 6.1606 -3.8035 -0.0026 13 8 5.5526 -4.8565 -0.0035 14 7 7.5084 -3.8034 -0.0031 15 6 8.2408 -5.0722 -0.0041 16 6 9.7450 -4.7925 -0.0039 17 1 10.0132 -4.2130 0.8796 18 6 10.5272 -6.1235 -0.0142 19 6 11.7087 -5.8042 -0.9702 20 6 11.0229 -4.8444 -1.9749 21 1 10.4845 -5.4111 -2.7345 22 6 12.0612 -3.9319 -2.6309 23 6 11.5517 -2.8695 -3.6069 24 6 12.0622 -2.4568 -2.2249 25 8 10.1051 -4.0697 -1.1869 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6803 0.8888 28 1 3.8745 -0.6799 -0.8912 29 1 3.6580 -3.1497 -0.8924 30 1 3.6587 -3.1508 0.8875 31 1 5.9715 -1.7963 -0.0012 32 1 7.9933 -2.9634 -0.0028 33 1 7.9773 -5.6432 -0.8943 34 1 7.9778 -5.6442 0.8856 35 1 10.8908 -6.3676 0.9839 36 1 9.9119 -6.9319 -0.4094 37 1 12.0653 -6.7055 -1.4687 38 1 12.5190 -5.3041 -0.4398 39 1 13.0238 -4.3948 -2.8482 40 1 10.4771 -2.8209 -3.7820 41 1 12.1793 -2.6334 -4.4664 42 1 13.0255 -1.9492 -2.1751 43 1 11.3232 -2.1360 -1.4907 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894129938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:52 Heat of formation + Delta-G solvation = -63.729116 kcal Electronic energy + Delta-G solvation = -21825.998469 eV Core-core repulsion = 18485.567757 eV Total energy + Delta-G solvation = -3340.430711 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.38799 -39.37872 -36.97806 -35.11051 -34.26547 -32.74920 -32.56540 -30.67679 -29.53793 -26.27939 -24.49299 -22.75045 -22.44938 -21.91439 -20.74434 -20.48628 -20.23990 -18.01665 -17.47804 -16.83536 -16.28773 -15.95492 -15.58802 -15.13422 -14.87288 -14.40237 -14.07500 -13.97689 -13.68421 -13.44052 -13.19112 -12.79870 -12.56237 -12.41365 -12.09665 -11.78322 -11.68410 -11.65128 -11.43116 -11.25627 -11.15360 -10.56257 -10.40071 -10.33786 -10.21660 -9.93437 -9.76889 -9.70388 -9.28132 -8.99350 -8.58916 -8.30107 -6.07392 -4.07130 2.97672 3.28426 3.35784 3.37436 3.38142 3.50973 3.61402 4.04058 4.25295 4.34130 4.41260 4.60878 4.63004 4.69438 4.75623 4.85990 4.96486 5.05973 5.13431 5.25689 5.32878 5.37835 5.39850 5.43399 5.58177 5.61694 5.71600 5.83039 5.89274 5.98669 6.14421 6.30647 6.56392 6.64622 6.76912 6.89274 7.12336 7.30126 7.37746 7.71827 8.38072 8.50866 8.96743 9.00196 9.52950 11.05741 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022580 B = 0.002955 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.722224 B = 9474.674542 C =10402.788527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.149 3.851 11 N -0.742 5.742 12 C 0.699 3.301 13 O -0.598 6.598 14 N -0.747 5.747 15 C 0.133 3.867 16 C 0.070 3.930 17 H 0.087 0.913 18 C -0.148 4.148 19 C -0.146 4.146 20 C 0.109 3.891 21 H 0.075 0.925 22 C -0.164 4.164 23 C -0.175 4.175 24 C -0.165 4.165 25 O -0.366 6.366 26 H 0.264 0.736 27 H 0.021 0.979 28 H 0.017 0.983 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.391 0.609 32 H 0.397 0.603 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.712 -8.741 -2.370 31.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.026 3.974 11 N -0.396 5.396 12 C 0.399 3.601 13 O -0.477 6.477 14 N -0.403 5.403 15 C 0.008 3.992 16 C 0.012 3.988 17 H 0.104 0.896 18 C -0.186 4.186 19 C -0.184 4.184 20 C 0.052 3.948 21 H 0.093 0.907 22 C -0.182 4.182 23 C -0.212 4.212 24 C -0.202 4.202 25 O -0.286 6.286 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.224 0.776 32 H 0.230 0.770 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.130 0.870 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 28.857 -9.408 -2.421 30.449 hybrid contribution 0.870 1.494 0.001 1.729 sum 29.727 -7.914 -2.420 30.857 Atomic orbital electron populations 1.69904 1.06287 1.27006 1.50610 1.24998 0.94762 0.99137 0.94424 0.86745 0.80260 0.83534 0.78487 1.20242 1.21319 1.19084 1.20932 0.88681 0.94901 1.51438 0.90590 1.19797 0.97884 0.91495 0.96783 1.21357 0.74866 0.99766 1.01420 1.45503 1.08863 1.06274 1.78973 1.16036 0.81292 0.84799 0.78010 1.90894 1.67838 1.30622 1.58375 1.44955 1.04850 1.09101 1.81432 1.21518 0.89082 0.86102 1.02520 1.22996 0.93477 0.93158 0.89142 0.89556 1.23092 0.96800 0.97357 1.01358 1.23248 0.98204 0.99914 0.97033 1.22412 0.88788 0.90602 0.93022 0.90740 1.22433 0.99663 0.91515 1.04565 1.22943 1.01883 1.03014 0.93363 1.22865 1.02806 0.95793 0.98705 1.88450 1.63723 1.42460 1.33946 0.92588 0.96035 0.96463 0.92233 0.92212 0.77586 0.76969 0.91541 0.90880 0.89574 0.89832 0.89780 0.90089 0.87036 0.88442 0.89044 0.89309 0.87619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.37 27.47 -169.99 -4.67 16.71 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.52 -14.89 9.66 -34.44 -0.33 -15.22 16 8 H 0.08 2.35 7.99 -52.48 -0.42 1.93 16 9 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 10 C 0.15 3.19 5.61 -4.04 -0.02 3.17 16 11 N -0.74 -13.10 5.56 -65.23 -0.36 -13.46 16 12 C 0.70 12.47 8.57 -86.92 -0.74 11.73 16 13 O -0.60 -13.15 16.34 5.29 0.09 -13.07 16 14 N -0.75 -9.81 5.47 -65.22 -0.36 -10.17 16 15 C 0.13 1.48 5.24 -4.04 -0.02 1.46 16 16 C 0.07 0.57 3.60 -26.01 -0.09 0.48 16 17 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 18 C -0.15 -0.89 6.55 -24.78 -0.16 -1.05 16 19 C -0.15 -0.82 6.57 -24.48 -0.16 -0.98 16 20 C 0.11 0.83 3.80 -25.70 -0.10 0.74 16 21 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 22 C -0.16 -1.17 5.70 -90.62 -0.52 -1.69 16 23 C -0.18 -1.38 10.22 -26.73 -0.27 -1.65 16 24 C -0.16 -1.27 9.89 -26.73 -0.26 -1.54 16 25 O -0.37 -3.45 8.96 -35.23 -0.32 -3.77 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 28 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 29 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.39 5.79 8.49 -40.82 -0.35 5.44 16 32 H 0.40 4.34 8.41 -40.82 -0.34 4.00 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.50 7.85 -51.93 -0.41 0.09 16 37 H 0.08 0.37 8.14 -51.94 -0.42 -0.06 16 38 H 0.08 0.43 8.06 -51.93 -0.42 0.01 16 39 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.11 0.94 7.09 -51.93 -0.37 0.57 16 LS Contribution 352.20 15.07 5.31 5.31 Total: -1.00 -33.92 352.20 -9.75 -43.67 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -7.31 Total: 5.02 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -2.90 Total: -3.29 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.05 Total: -50.59 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.23 Total: -16.83 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.92 -9.75 -43.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894129938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.058 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds