Wall clock time and date at job start Tue Mar 31 2020 05:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99916 * 2 1 4 4 H 1.48500 * 109.47248 * 240.00157 * 3 2 1 5 5 H 1.48500 * 109.47107 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47189 * 119.99999 * 3 2 1 7 7 C 1.37876 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00037 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47214 * 179.97438 * 9 7 2 11 11 N 1.46495 * 109.47195 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99916 * 180.02562 * 11 10 9 13 13 O 1.21591 * 120.00167 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00022 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00088 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47189 * 179.97438 * 15 14 12 17 17 C 1.52999 * 115.54862 * 180.02562 * 16 15 14 18 18 O 1.42903 * 112.85030 * 164.08931 * 17 16 15 19 19 C 1.53778 * 113.61560 * 295.27869 * 17 16 15 20 20 C 1.54052 * 86.98326 * 140.02217 * 19 17 16 21 21 C 1.53773 * 87.07695 * 334.56942 * 20 19 17 22 22 C 1.52993 * 117.50125 * 325.67401 * 16 15 14 23 23 C 1.53004 * 117.49820 * 34.33441 * 16 15 14 24 24 H 0.96999 * 119.99928 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47069 * 60.00071 * 9 7 2 26 26 H 1.09000 * 109.46851 * 300.00218 * 9 7 2 27 27 H 1.09001 * 109.47010 * 60.00077 * 10 9 7 28 28 H 1.08998 * 109.46924 * 300.00058 * 10 9 7 29 29 H 0.96999 * 119.99853 * 0.02562 * 11 10 9 30 30 H 0.96998 * 120.00359 * 0.02562 * 14 12 11 31 31 H 1.09004 * 109.47197 * 60.00501 * 15 14 12 32 32 H 1.08996 * 109.47377 * 300.00146 * 15 14 12 33 33 H 0.96700 * 114.00311 * 180.02562 * 18 17 16 34 34 H 1.08995 * 113.62020 * 254.61273 * 19 17 16 35 35 H 1.09004 * 113.61517 * 25.51927 * 19 17 16 36 36 H 1.09003 * 113.61948 * 220.01825 * 20 19 17 37 37 H 1.09001 * 113.61644 * 89.12155 * 20 19 17 38 38 H 1.09004 * 113.61925 * 270.87629 * 21 20 19 39 39 H 1.09011 * 113.61159 * 139.97609 * 21 20 19 40 40 H 1.08999 * 117.50121 * 215.00178 * 22 16 15 41 41 H 1.08998 * 117.49845 * 0.02562 * 22 16 15 42 42 H 1.09000 * 117.49777 * 359.97320 * 23 16 15 43 43 H 1.08997 * 117.49978 * 144.99294 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 7 1.5128 -4.9308 -0.0033 12 6 2.1867 -6.0980 -0.0037 13 8 3.4026 -6.0980 -0.0041 14 7 1.5128 -7.2651 -0.0047 15 6 2.2453 -8.5338 -0.0057 16 6 1.2510 -9.6968 -0.0060 17 6 1.8715 -11.0953 -0.0065 18 8 0.9389 -12.1163 0.3542 19 6 2.6713 -11.4141 -1.2807 20 6 3.6997 -12.1042 -0.3646 21 6 3.2028 -11.1789 0.7586 22 6 -0.0596 -9.5060 0.7598 23 6 -0.0601 -9.5050 -0.7710 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6240 -2.5574 0.8880 27 1 2.8719 -3.6051 0.8873 28 1 2.8719 -3.6035 -0.8927 29 1 0.5428 -4.9307 -0.0033 30 1 0.5428 -7.2652 -0.0055 31 1 2.8719 -8.5924 0.8844 32 1 2.8720 -8.5909 -0.8956 33 1 1.3139 -13.0076 0.3596 34 1 2.1596 -12.0979 -1.9579 35 1 3.0601 -10.5293 -1.7849 36 1 4.7345 -11.9220 -0.6547 37 1 3.4883 -13.1587 -0.1874 38 1 3.7366 -10.2300 0.8110 39 1 3.1198 -11.6731 1.7267 40 1 -0.4799 -10.3767 1.2629 41 1 -0.2138 -8.5518 1.2635 42 1 -0.2146 -8.5502 -1.2735 43 1 -0.4807 -10.3752 -1.2749 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894130028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:22 Heat of formation + Delta-G solvation = -38.331755 kcal Electronic energy + Delta-G solvation = -22085.803731 eV Core-core repulsion = 18746.474332 eV Total energy + Delta-G solvation = -3339.329399 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.88434 -39.45366 -37.23272 -34.88675 -34.70852 -33.45760 -32.74008 -29.66944 -27.75122 -26.10830 -25.45798 -24.22733 -22.52939 -21.13713 -20.76762 -20.52255 -19.24779 -18.10667 -17.12010 -16.49894 -16.23573 -15.58789 -15.39879 -15.13101 -14.60805 -14.47535 -14.19990 -13.97235 -13.56305 -13.46311 -13.27238 -12.99366 -12.48816 -12.36710 -12.24981 -11.61223 -11.31354 -11.20585 -11.17984 -11.03316 -11.00839 -10.70622 -10.63596 -10.29355 -10.12887 -9.93024 -9.72667 -9.54312 -9.26189 -8.96459 -8.46474 -8.22789 -6.07646 -4.10314 2.95633 3.32645 3.36283 3.37831 3.39989 3.60654 3.75198 4.09997 4.24933 4.28272 4.41300 4.47963 4.52209 4.69046 4.76677 4.86532 5.12847 5.29369 5.33109 5.38096 5.49697 5.52070 5.54582 5.62041 5.63367 5.73581 5.75004 5.81025 6.00262 6.04159 6.31007 6.41662 6.59651 6.79457 7.01405 7.22869 7.25991 7.58230 7.65142 7.91510 8.27307 8.43684 8.94082 9.00658 9.54300 11.04034 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041416 B = 0.002660 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.911721 B =10523.714716 C =10971.636225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.738 5.738 12 C 0.699 3.301 13 O -0.598 6.598 14 N -0.754 5.754 15 C 0.182 3.818 16 C -0.124 4.124 17 C 0.156 3.844 18 O -0.539 6.539 19 C -0.165 4.165 20 C -0.149 4.149 21 C -0.171 4.171 22 C -0.161 4.161 23 C -0.165 4.165 24 H 0.262 0.738 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.393 0.607 30 H 0.394 0.606 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.379 0.621 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.542 -26.137 -0.491 26.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.017 3.983 11 N -0.392 5.392 12 C 0.399 3.601 13 O -0.477 6.477 14 N -0.413 5.413 15 C 0.057 3.943 16 C -0.124 4.124 17 C 0.115 3.885 18 O -0.345 6.345 19 C -0.203 4.203 20 C -0.186 4.186 21 C -0.209 4.209 22 C -0.198 4.198 23 C -0.202 4.202 24 H 0.072 0.928 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.226 0.774 30 H 0.229 0.771 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.227 0.773 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.123 0.877 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.135 -25.462 -0.445 25.492 hybrid contribution -0.117 0.389 -0.062 0.410 sum 1.018 -25.074 -0.507 25.100 Atomic orbital electron populations 1.69948 1.06091 1.26961 1.50391 1.24996 0.94895 0.99396 0.95011 0.86565 0.79504 0.82634 0.78785 1.20106 1.21267 1.20109 1.21019 0.93242 0.90380 1.51354 0.92264 1.19320 0.94250 0.91061 0.97799 1.21593 0.95638 0.80374 1.00652 1.45528 1.09831 1.05314 1.78496 1.16017 0.85619 0.80412 0.78053 1.90887 1.11734 1.86694 1.58376 1.45201 1.09611 1.04598 1.81867 1.20423 0.92140 0.79384 1.02308 1.21335 0.89876 0.93110 1.08119 1.21273 0.86828 0.86103 0.94325 1.86426 1.38618 1.18143 1.91265 1.23755 0.97587 1.01731 0.97210 1.22935 1.00084 0.98642 0.96927 1.23811 0.97084 1.01496 0.98490 1.23031 0.98840 1.03514 0.94438 1.23042 0.98939 1.03382 0.94809 0.92808 0.95987 0.95969 0.92775 0.92770 0.77426 0.77053 0.90991 0.91213 0.77286 0.90808 0.88718 0.90636 0.90277 0.88306 0.90681 0.87655 0.88640 0.88485 0.88251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.05 5.61 -4.05 -0.02 3.03 16 11 N -0.74 -13.28 5.56 -65.23 -0.36 -13.64 16 12 C 0.70 12.45 8.57 -86.92 -0.74 11.71 16 13 O -0.60 -12.98 16.34 5.29 0.09 -12.89 16 14 N -0.75 -9.87 5.00 -65.23 -0.33 -10.20 16 15 C 0.18 2.12 4.72 -4.04 -0.02 2.10 16 16 C -0.12 -1.17 2.12 -154.51 -0.33 -1.50 16 17 C 0.16 1.27 1.59 -89.81 -0.14 1.13 16 18 O -0.54 -4.23 12.22 -35.23 -0.43 -4.66 16 19 C -0.17 -1.20 7.37 -25.78 -0.19 -1.39 16 20 C -0.15 -0.92 7.76 -25.78 -0.20 -1.12 16 21 C -0.17 -1.30 7.20 -25.93 -0.19 -1.49 16 22 C -0.16 -1.50 9.18 -26.70 -0.25 -1.75 16 23 C -0.16 -1.49 9.35 -26.69 -0.25 -1.74 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.39 6.09 8.49 -40.82 -0.35 5.74 16 30 H 0.39 4.27 5.59 -40.82 -0.23 4.04 16 31 H 0.07 0.89 6.74 -51.93 -0.35 0.54 16 32 H 0.07 0.85 7.24 -51.93 -0.38 0.48 16 33 H 0.38 1.62 8.32 45.56 0.38 2.00 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.76 7.14 -51.93 -0.37 0.39 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.36 7.79 -51.93 -0.40 -0.04 16 38 H 0.10 0.85 5.95 -51.93 -0.31 0.54 16 39 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 40 H 0.11 1.02 7.40 -51.93 -0.38 0.63 16 41 H 0.10 0.88 7.01 -51.93 -0.36 0.52 16 42 H 0.10 0.86 7.01 -51.93 -0.36 0.50 16 43 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 346.26 15.07 5.22 5.22 Total: -1.00 -32.86 346.26 -9.02 -41.88 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.04 Total: 7.51 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -2.88 Total: -4.15 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.05 Total: -49.40 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.34 Total: -17.55 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.86 -9.02 -41.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894130028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.550 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds