Wall clock time and date at job start Tue Mar 31 2020 05:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00243 * 2 1 4 4 H 1.48496 * 109.47067 * 270.00285 * 3 2 1 5 5 H 1.48500 * 109.46892 * 29.99969 * 3 2 1 6 6 H 1.48496 * 109.47197 * 149.99882 * 3 2 1 7 7 C 1.37876 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00523 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00084 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47102 * 179.97438 * 9 7 2 11 11 N 1.46508 * 109.46924 * 179.97438 * 10 9 7 12 12 C 1.34770 * 119.99710 * 179.97438 * 11 10 9 13 13 O 1.21588 * 120.00662 * 359.97438 * 12 11 10 14 14 N 1.34782 * 119.99747 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99948 * 179.97438 * 14 12 11 16 16 H 1.09005 * 110.47680 * 354.14683 * 15 14 12 17 17 C 1.54946 * 110.53381 * 231.33649 * 15 14 12 18 18 C 1.55048 * 102.10646 * 220.53042 * 17 15 14 19 19 O 1.44521 * 103.58725 * 36.68954 * 18 17 15 20 20 C 1.43140 * 106.84242 * 320.54683 * 19 18 17 21 21 C 1.53730 * 110.46443 * 146.58139 * 20 19 18 22 22 C 1.55012 * 104.07039 * 97.34298 * 21 20 19 23 23 C 1.54937 * 102.81065 * 37.49313 * 22 21 20 24 24 C 1.53346 * 110.67167 * 265.08172 * 20 19 18 25 25 H 0.97002 * 119.99360 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47172 * 59.98911 * 9 7 2 27 27 H 1.09006 * 109.46467 * 299.99541 * 9 7 2 28 28 H 1.08996 * 109.47187 * 299.99382 * 10 9 7 29 29 H 1.08991 * 109.47367 * 59.99473 * 10 9 7 30 30 H 0.96996 * 119.99506 * 359.97438 * 11 10 9 31 31 H 0.96999 * 120.00262 * 0.02562 * 14 12 11 32 32 H 1.09005 * 110.90482 * 338.72945 * 17 15 14 33 33 H 1.08998 * 110.91030 * 102.32796 * 17 15 14 34 34 H 1.08998 * 110.59987 * 278.16114 * 18 17 15 35 35 H 1.09000 * 110.72920 * 155.27342 * 18 17 15 36 36 H 1.09005 * 110.51124 * 215.99113 * 21 20 19 37 37 H 1.09005 * 110.50913 * 338.69303 * 21 20 19 38 38 H 1.09000 * 110.74364 * 279.16369 * 22 21 20 39 39 H 1.08995 * 110.74936 * 155.82035 * 22 21 20 40 40 H 1.08997 * 110.48750 * 203.67637 * 23 22 21 41 41 H 1.09001 * 110.59515 * 81.09558 * 23 22 21 42 42 H 1.09000 * 110.06931 * 358.60402 * 24 20 19 43 43 H 1.08992 * 110.07473 * 120.13999 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 7 5.4866 -2.6367 -0.0001 12 6 6.1604 -3.8038 0.0003 13 8 5.5525 -4.8569 0.0012 14 7 7.5082 -3.8039 -0.0003 15 6 8.2406 -5.0726 0.0007 16 1 7.5516 -5.9107 0.1060 17 6 9.2979 -5.0889 1.1333 18 6 10.5064 -5.7694 0.4402 19 8 10.4527 -5.2615 -0.9117 20 6 9.0711 -5.2161 -1.2831 21 6 8.8058 -4.0289 -2.2229 22 6 8.8433 -4.6547 -3.6406 23 6 8.1685 -6.0328 -3.4257 24 6 8.6716 -6.4892 -2.0390 25 1 -0.4849 0.8401 -0.0004 26 1 3.8746 -0.6807 0.8904 27 1 3.8752 -0.6797 -0.8896 28 1 3.6579 -3.1506 0.8897 29 1 3.6585 -3.1503 -0.8902 30 1 5.9715 -1.7966 -0.0005 31 1 7.9932 -2.9639 -0.0006 32 1 9.5489 -4.0752 1.4457 33 1 8.9515 -5.6808 1.9804 34 1 10.3923 -6.8534 0.4475 35 1 11.4405 -5.4800 0.9217 36 1 7.8261 -3.5948 -2.0229 37 1 9.5870 -3.2760 -2.1170 38 1 9.8714 -4.7772 -3.9815 39 1 8.2714 -4.0505 -4.3447 40 1 8.4837 -6.7362 -4.1963 41 1 7.0832 -5.9320 -3.4235 42 1 9.5357 -7.1440 -2.1515 43 1 7.8759 -7.0076 -1.5044 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894130389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:43 Heat of formation + Delta-G solvation = -84.283390 kcal Electronic energy + Delta-G solvation = -22874.526702 eV Core-core repulsion = 19533.204691 eV Total energy + Delta-G solvation = -3341.322012 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.01445 -39.22198 -36.27128 -35.21781 -34.42574 -32.81299 -31.22843 -29.95316 -28.93849 -28.57425 -25.11358 -24.14649 -21.98493 -21.32920 -20.78645 -20.46731 -19.74187 -18.23181 -16.96486 -16.65590 -16.34393 -15.96971 -15.34698 -15.08193 -14.79693 -14.27474 -13.97586 -13.94715 -13.77206 -13.41760 -13.14404 -12.86483 -12.61281 -12.23089 -11.88197 -11.52304 -11.48990 -11.34616 -11.23331 -11.20183 -10.97144 -10.92768 -10.70657 -10.39989 -10.27260 -9.99390 -9.89226 -9.77602 -9.33343 -9.05015 -8.63439 -8.42957 -6.11549 -4.11624 2.85840 3.24616 3.32256 3.33372 3.39781 3.60581 4.23833 4.37076 4.37298 4.45009 4.52687 4.70193 4.79625 4.82855 4.96336 5.20205 5.21431 5.30955 5.38324 5.44040 5.55971 5.59275 5.60212 5.69085 5.75423 5.79280 5.91453 5.94703 6.03704 6.06759 6.22953 6.23870 6.49026 6.57602 6.75986 6.79369 7.00376 7.23268 7.26550 7.66643 8.23966 8.44755 8.84284 8.93255 9.48565 11.01527 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026293 B = 0.003471 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.665312 B = 8063.924608 C = 8281.160147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.148 3.852 11 N -0.741 5.741 12 C 0.700 3.300 13 O -0.592 6.592 14 N -0.739 5.739 15 C 0.139 3.861 16 H 0.117 0.883 17 C -0.167 4.167 18 C 0.045 3.955 19 O -0.362 6.362 20 C 0.087 3.913 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.134 4.134 25 H 0.265 0.735 26 H 0.021 0.979 27 H 0.017 0.983 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.392 0.608 31 H 0.396 0.604 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.527 -9.265 -1.804 25.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.026 3.974 11 N -0.394 5.394 12 C 0.400 3.600 13 O -0.471 6.471 14 N -0.394 5.394 15 C 0.032 3.968 16 H 0.135 0.865 17 C -0.206 4.206 18 C -0.031 4.031 19 O -0.281 6.281 20 C 0.046 3.954 21 C -0.158 4.158 22 C -0.160 4.160 23 C -0.160 4.160 24 C -0.172 4.172 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.225 0.775 31 H 0.231 0.769 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 22.902 -10.056 -1.924 25.086 hybrid contribution 0.661 1.651 0.213 1.791 sum 23.563 -8.405 -1.711 25.076 Atomic orbital electron populations 1.69907 1.06290 1.27041 1.50438 1.24999 0.94761 0.99133 0.94387 0.86747 0.80235 0.83560 0.78488 1.20229 1.21285 1.19132 1.20915 0.88627 0.94908 1.51621 0.90590 1.19797 0.97947 0.91403 0.96787 1.21386 0.74638 0.99882 1.01525 1.45537 1.08995 1.06191 1.78699 1.16041 0.81250 0.84923 0.77830 1.90898 1.67555 1.30499 1.58112 1.45168 1.05039 1.08546 1.80693 1.22240 0.93431 0.88262 0.92908 0.86511 1.23552 0.95646 1.02679 0.98744 1.23530 0.98728 0.98073 0.82819 1.88885 1.23956 1.85602 1.29650 1.22723 0.81728 0.96142 0.94803 1.22557 1.02988 0.96421 0.93871 1.22495 1.00608 0.96227 0.96680 1.22333 1.00662 0.96804 0.96171 1.22609 1.01307 0.96739 0.96581 0.92550 0.96055 0.96456 0.92122 0.92116 0.77539 0.76940 0.89942 0.89522 0.91959 0.88853 0.89212 0.90871 0.91514 0.91462 0.91673 0.91231 0.90863 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 7 C -0.52 -14.56 9.66 -34.44 -0.33 -14.89 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 9 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 10 C 0.15 3.01 5.61 -4.04 -0.02 2.99 16 11 N -0.74 -11.94 5.56 -65.23 -0.36 -12.30 16 12 C 0.70 11.26 8.27 -86.92 -0.72 10.54 16 13 O -0.59 -11.96 15.72 5.29 0.08 -11.88 16 14 N -0.74 -8.62 2.93 -57.38 -0.17 -8.79 16 15 C 0.14 1.52 3.35 -66.61 -0.22 1.30 16 16 H 0.12 1.52 5.97 -51.93 -0.31 1.21 16 17 C -0.17 -1.41 6.89 -24.62 -0.17 -1.58 16 18 C 0.05 0.36 7.71 38.24 0.29 0.66 16 19 O -0.36 -3.83 10.76 -35.23 -0.38 -4.21 16 20 C 0.09 0.92 1.06 -89.76 -0.10 0.82 16 21 C -0.12 -1.27 5.45 -25.29 -0.14 -1.41 16 22 C -0.12 -1.23 6.91 -24.65 -0.17 -1.40 16 23 C -0.12 -1.26 6.84 -24.97 -0.17 -1.43 16 24 C -0.13 -1.40 6.28 -25.81 -0.16 -1.56 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 27 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.39 5.20 8.49 -40.82 -0.35 4.85 16 31 H 0.40 3.67 8.42 -40.82 -0.34 3.32 16 32 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.09 1.04 5.99 -51.93 -0.31 0.73 16 37 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.71 7.97 -51.93 -0.41 0.30 16 43 H 0.07 0.80 7.09 -51.93 -0.37 0.43 16 LS Contribution 339.22 15.07 5.11 5.11 Total: -1.00 -32.52 339.22 -8.82 -41.34 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.09 Total: 5.66 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -2.12 Total: -4.70 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.24 Total: -47.59 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.30 Total: -16.09 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.52 -8.82 -41.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894130389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.945 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds