Wall clock time and date at job start Tue Mar 31 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99567 * 2 1 4 4 H 1.48503 * 109.46940 * 270.00076 * 3 2 1 5 5 H 1.48496 * 109.47314 * 29.99651 * 3 2 1 6 6 H 1.48499 * 109.46953 * 150.00181 * 3 2 1 7 7 C 1.37870 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99545 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00193 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47243 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.46978 * 180.02562 * 10 9 7 12 12 C 1.34780 * 119.99700 * 180.02562 * 11 10 9 13 13 O 1.21583 * 120.00438 * 359.97438 * 12 11 10 14 14 N 1.34782 * 119.99843 * 180.02562 * 12 11 10 15 15 C 1.46496 * 120.00118 * 180.02562 * 14 12 11 16 16 H 1.09011 * 110.49208 * 323.72573 * 15 14 12 17 17 C 1.54685 * 110.55996 * 86.44477 * 15 14 12 18 18 C 1.54547 * 104.05356 * 119.31877 * 17 15 14 19 19 O 1.44585 * 104.95784 * 336.30462 * 18 17 15 20 20 C 1.43466 * 105.26734 * 39.36457 * 19 18 17 21 21 C 1.53460 * 110.84389 * 80.79256 * 20 19 18 22 22 C 1.55085 * 103.99243 * 98.47025 * 21 20 19 23 23 C 1.54962 * 102.85150 * 37.23807 * 22 21 20 24 24 C 1.53064 * 111.09008 * 200.17996 * 20 19 18 25 25 H 0.97000 * 120.00605 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46991 * 59.99553 * 9 7 2 27 27 H 1.08997 * 109.47258 * 299.99884 * 9 7 2 28 28 H 1.08999 * 109.47451 * 59.99885 * 10 9 7 29 29 H 1.09006 * 109.47162 * 300.00032 * 10 9 7 30 30 H 0.96994 * 120.00226 * 359.97438 * 11 10 9 31 31 H 0.97000 * 119.99847 * 359.97438 * 14 12 11 32 32 H 1.09001 * 110.51423 * 0.68117 * 17 15 14 33 33 H 1.08999 * 110.51951 * 237.95868 * 17 15 14 34 34 H 1.09000 * 110.33949 * 95.17445 * 18 17 15 35 35 H 1.08999 * 110.34050 * 217.43323 * 18 17 15 36 36 H 1.08999 * 110.52480 * 217.09322 * 21 20 19 37 37 H 1.09005 * 110.53047 * 339.84212 * 21 20 19 38 38 H 1.09003 * 110.73257 * 278.90112 * 22 21 20 39 39 H 1.09001 * 110.73676 * 155.58251 * 22 21 20 40 40 H 1.08994 * 110.48317 * 203.82563 * 23 22 21 41 41 H 1.09003 * 110.58916 * 81.25361 * 23 22 21 42 42 H 1.09000 * 110.09109 * 357.57658 * 24 20 19 43 43 H 1.09001 * 110.08793 * 119.10642 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1938 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9307 -0.0001 12 6 2.1869 -6.0979 0.0003 13 8 3.4027 -6.0979 0.0007 14 7 1.5131 -7.2651 -0.0008 15 6 2.2456 -8.5338 0.0003 16 1 3.1502 -8.4526 -0.6025 17 6 2.5928 -8.9595 1.4463 18 6 1.8773 -10.3183 1.6196 19 8 0.8025 -10.3001 0.6526 20 6 1.3550 -9.6750 -0.5145 21 6 2.1788 -10.6782 -1.3331 22 6 1.2090 -11.1332 -2.4545 23 6 0.4384 -9.8320 -2.7928 24 6 0.2497 -9.1366 -1.4263 25 1 -0.4851 0.8400 0.0004 26 1 0.6248 -2.5570 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.8721 -3.6042 0.8905 29 1 2.8721 -3.6042 -0.8895 30 1 0.5430 -4.9307 0.0000 31 1 0.5431 -7.2652 -0.0015 32 1 2.2089 -8.2318 2.1613 33 1 3.6702 -9.0778 1.5615 34 1 2.5640 -11.1378 1.4075 35 1 1.4772 -10.4098 2.6293 36 1 3.0564 -10.1933 -1.7605 37 1 2.4727 -11.5263 -0.7146 38 1 0.5277 -11.9009 -2.0874 39 1 1.7631 -11.4905 -3.3225 40 1 -0.5283 -10.0662 -3.2384 41 1 1.0241 -9.2031 -3.4633 42 1 -0.7289 -9.3817 -1.0134 43 1 0.3490 -8.0569 -1.5377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894130392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:46 Heat of formation + Delta-G solvation = -87.857281 kcal Electronic energy + Delta-G solvation = -22623.061832 eV Core-core repulsion = 19281.584845 eV Total energy + Delta-G solvation = -3341.476987 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.04638 -39.15257 -36.30492 -35.06040 -34.27824 -32.83581 -31.16538 -29.68395 -28.86925 -28.57073 -25.03929 -24.24783 -22.02081 -21.46246 -20.86412 -20.22286 -19.68630 -18.23447 -16.60584 -16.47708 -16.30214 -15.90735 -15.56992 -14.93036 -14.78697 -14.50411 -14.21352 -13.77431 -13.49119 -13.31498 -13.15413 -12.68241 -12.30325 -12.19100 -11.95014 -11.51019 -11.38095 -11.30371 -11.18475 -11.11178 -11.02153 -10.92972 -10.74244 -10.62520 -10.31641 -9.95998 -9.91019 -9.55128 -9.25775 -9.00944 -8.48310 -8.25426 -6.08651 -4.11342 2.97487 3.30045 3.36216 3.40763 3.52703 3.62748 4.22708 4.25949 4.40015 4.44645 4.63245 4.67634 4.80320 4.92961 4.98991 5.12876 5.19008 5.28473 5.35355 5.44081 5.46386 5.50453 5.60105 5.64315 5.67817 5.79074 5.82658 5.90734 5.98222 6.08271 6.29805 6.39948 6.57338 6.73468 6.78036 6.99720 7.22302 7.57243 7.63865 7.90478 8.26161 8.42471 8.93091 8.99143 9.53435 11.03007 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031366 B = 0.003048 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.472934 B = 9183.963430 C = 9524.692251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.738 5.738 12 C 0.698 3.302 13 O -0.597 6.597 14 N -0.743 5.743 15 C 0.147 3.853 16 H 0.102 0.898 17 C -0.168 4.168 18 C 0.043 3.957 19 O -0.359 6.359 20 C 0.093 3.907 21 C -0.137 4.137 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.126 4.126 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.393 0.607 31 H 0.397 0.603 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.014 -23.660 -1.671 23.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.018 3.982 11 N -0.391 5.391 12 C 0.398 3.602 13 O -0.476 6.476 14 N -0.401 5.401 15 C 0.040 3.960 16 H 0.120 0.880 17 C -0.207 4.207 18 C -0.033 4.033 19 O -0.278 6.278 20 C 0.053 3.947 21 C -0.175 4.175 22 C -0.158 4.158 23 C -0.160 4.160 24 C -0.163 4.163 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.226 0.774 31 H 0.233 0.767 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.757 -23.556 -1.637 23.625 hybrid contribution -0.282 1.035 0.145 1.082 sum 0.475 -22.521 -1.492 22.576 Atomic orbital electron populations 1.69954 1.06087 1.26854 1.50448 1.24994 0.94892 0.99400 0.95013 0.86512 0.79847 0.83002 0.78194 1.20561 1.21187 1.19715 1.21051 0.93267 0.90366 1.51259 0.92228 1.19323 0.94252 0.91077 0.97810 1.21591 0.95632 0.80390 1.00624 1.45544 1.09859 1.05314 1.78418 1.16086 0.85685 0.80488 0.77934 1.90881 1.11729 1.86642 1.58324 1.45357 1.09465 1.04143 1.81149 1.21964 0.95360 0.82499 0.96182 0.87993 1.23474 1.01840 0.97545 0.97855 1.23472 0.89612 0.96576 0.93683 1.89069 1.34379 1.80682 1.23669 1.22576 0.93698 0.91238 0.87184 1.22756 0.98339 0.98869 0.97526 1.22501 0.97876 0.97563 0.97879 1.22382 1.00619 0.96472 0.96557 1.22260 0.98425 1.01315 0.94328 0.92862 0.95976 0.95970 0.92806 0.92785 0.77394 0.76687 0.89950 0.89816 0.92146 0.89052 0.90312 0.90677 0.91232 0.91381 0.91274 0.91254 0.90167 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.03 5.61 -4.04 -0.02 3.01 16 11 N -0.74 -13.10 5.56 -65.23 -0.36 -13.46 16 12 C 0.70 12.18 8.56 -86.91 -0.74 11.44 16 13 O -0.60 -12.68 16.06 5.29 0.08 -12.60 16 14 N -0.74 -9.68 3.97 -57.48 -0.23 -9.90 16 15 C 0.15 1.72 2.83 -66.71 -0.19 1.53 16 16 H 0.10 1.33 6.95 -51.92 -0.36 0.97 16 17 C -0.17 -1.81 6.89 -25.03 -0.17 -1.98 16 18 C 0.04 0.39 7.28 37.97 0.28 0.67 16 19 O -0.36 -3.90 10.99 -35.23 -0.39 -4.28 16 20 C 0.09 0.93 1.00 -90.02 -0.09 0.84 16 21 C -0.14 -1.17 5.92 -25.39 -0.15 -1.32 16 22 C -0.12 -0.93 6.92 -24.59 -0.17 -1.10 16 23 C -0.12 -1.01 6.85 -24.92 -0.17 -1.18 16 24 C -0.13 -1.17 5.62 -25.92 -0.15 -1.32 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.39 6.03 8.49 -40.82 -0.35 5.68 16 31 H 0.40 4.38 6.91 -40.82 -0.28 4.09 16 32 H 0.08 1.00 7.97 -51.93 -0.41 0.58 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.46 7.44 -51.93 -0.39 0.07 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.66 7.44 -51.93 -0.39 0.27 16 37 H 0.07 0.60 7.19 -51.93 -0.37 0.22 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.74 7.98 -51.93 -0.41 0.33 16 43 H 0.09 0.85 5.65 -51.93 -0.29 0.56 16 LS Contribution 341.34 15.07 5.14 5.14 Total: -1.00 -32.07 341.34 -9.19 -41.26 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.03 Total: 5.37 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -2.13 Total: -2.50 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.15 Total: -48.81 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.30 Total: -16.88 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.07 -9.19 -41.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894130392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.592 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds