Wall clock time and date at job start Tue Mar 31 2020 05:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00034 * 2 1 4 4 H 1.48501 * 109.47149 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47092 * 300.00227 * 3 2 1 6 6 H 1.48503 * 109.47021 * 59.99875 * 3 2 1 7 7 C 1.37878 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00201 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99626 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46933 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00335 * 179.97438 * 10 9 7 12 12 O 1.21596 * 119.99586 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00486 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00023 * 179.97438 * 13 11 10 15 15 H 1.09002 * 110.47931 * 34.29984 * 14 13 11 16 16 C 1.54610 * 110.53484 * 271.63421 * 14 13 11 17 17 C 1.54506 * 104.05761 * 240.94513 * 16 14 13 18 18 O 1.44513 * 104.88449 * 23.82445 * 17 16 14 19 19 C 1.43914 * 105.27247 * 320.09276 * 18 17 16 20 20 C 1.52464 * 110.19053 * 158.65674 * 19 18 17 21 21 C 1.53094 * 109.53886 * 63.45721 * 20 19 18 22 22 C 1.53000 * 109.42050 * 59.14797 * 21 20 19 23 23 C 1.53004 * 109.55573 * 299.58808 * 22 21 20 24 24 C 1.52473 * 110.17765 * 281.14291 * 19 18 17 25 25 H 0.96996 * 120.00181 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47667 * 59.99928 * 9 7 2 27 27 H 1.09001 * 109.47145 * 299.99168 * 9 7 2 28 28 H 0.97006 * 119.99869 * 0.02562 * 10 9 7 29 29 H 0.96998 * 119.99663 * 359.97438 * 13 11 10 30 30 H 1.08999 * 110.50964 * 359.59014 * 16 14 13 31 31 H 1.08999 * 110.51356 * 122.30287 * 16 14 13 32 32 H 1.09005 * 110.35918 * 142.67379 * 17 16 14 33 33 H 1.08997 * 110.36268 * 264.97070 * 17 16 14 34 34 H 1.09000 * 109.45792 * 183.47788 * 20 19 18 35 35 H 1.09005 * 109.46082 * 303.43710 * 20 19 18 36 36 H 1.08999 * 109.47666 * 299.16270 * 21 20 19 37 37 H 1.08996 * 109.48394 * 179.13983 * 21 20 19 38 38 H 1.09004 * 109.45678 * 179.55635 * 22 21 20 39 39 H 1.09001 * 109.45310 * 59.61113 * 22 21 20 40 40 H 1.08998 * 109.47627 * 300.44033 * 23 22 21 41 41 H 1.08997 * 109.48415 * 180.40449 * 23 22 21 42 42 H 1.09002 * 109.46324 * 56.56499 * 24 19 18 43 43 H 1.08999 * 109.45939 * 176.53881 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7539 -4.8834 0.0011 12 8 0.5584 -5.1056 0.0011 13 7 2.6297 -5.9078 0.0016 14 6 2.1413 -7.2890 0.0027 15 1 1.2188 -7.3678 -0.5724 16 6 1.9220 -7.7855 1.4504 17 6 2.8831 -8.9878 1.5845 18 8 3.9074 -8.7568 0.5916 19 6 3.2113 -8.2440 -0.5589 20 6 4.1753 -7.4800 -1.4598 21 6 5.2425 -8.4375 -1.9964 22 6 4.5672 -9.5635 -2.7818 23 6 3.6202 -10.3345 -1.8598 24 6 2.5469 -9.3840 -1.3229 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 3.1568 -3.4354 0.0009 29 1 3.5833 -5.7305 0.0012 30 1 2.1839 -7.0056 2.1654 31 1 0.8894 -8.1043 1.5926 32 1 3.3212 -9.0137 2.5823 33 1 2.3566 -9.9192 1.3765 34 1 3.6250 -7.0450 -2.2942 35 1 4.6547 -6.6856 -0.8877 36 1 5.8030 -8.8609 -1.1630 37 1 5.9221 -7.8936 -2.6524 38 1 5.3271 -10.2413 -3.1708 39 1 4.0010 -9.1390 -3.6108 40 1 4.1849 -10.7529 -1.0266 41 1 3.1452 -11.1408 -2.4186 42 1 1.8804 -9.9292 -0.6546 43 1 1.9730 -8.9772 -2.1555 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894486915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:00 Heat of formation + Delta-G solvation = -93.144280 kcal Electronic energy + Delta-G solvation = -23114.241879 eV Core-core repulsion = 19772.535630 eV Total energy + Delta-G solvation = -3341.706249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95803 -38.81804 -36.56705 -34.51815 -33.91182 -32.32497 -31.35229 -30.35495 -30.24709 -27.12396 -25.35031 -23.10814 -22.61824 -22.12889 -20.79438 -19.93730 -19.51383 -18.18210 -16.74035 -16.10171 -15.81398 -15.65252 -15.35794 -14.81504 -14.63725 -14.42281 -14.00042 -13.81505 -13.37128 -13.11705 -13.03423 -12.47089 -12.40734 -12.26049 -11.96663 -11.76603 -11.70392 -11.53123 -11.28865 -11.14889 -10.92037 -10.89557 -10.66384 -10.48921 -10.29797 -10.18157 -9.69857 -9.39291 -9.33825 -8.76621 -8.66966 -7.75155 -6.14475 -4.20815 3.24788 3.28828 3.33204 3.38179 3.73206 3.92661 4.33744 4.45146 4.47876 4.54942 4.77306 4.87221 5.01264 5.02895 5.05504 5.18469 5.21785 5.24556 5.32025 5.35024 5.43214 5.51847 5.60894 5.63694 5.77917 5.84476 5.92144 5.97413 6.01202 6.02800 6.07756 6.14797 6.29029 6.78445 6.91017 7.13727 7.53086 7.56939 7.58375 7.92127 8.05742 8.78092 8.95723 9.34779 9.49540 10.95845 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027882 B = 0.003553 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.982394 B = 7878.170867 C = 8320.581369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.267 3.733 10 N -0.729 5.729 11 C 0.693 3.307 12 O -0.601 6.601 13 N -0.747 5.747 14 C 0.145 3.855 15 H 0.101 0.899 16 C -0.168 4.168 17 C 0.044 3.956 18 O -0.358 6.358 19 C 0.100 3.900 20 C -0.104 4.104 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.113 4.113 24 C -0.131 4.131 25 H 0.265 0.735 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.386 0.614 29 H 0.393 0.607 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.729 -20.462 -1.930 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.146 3.854 10 N -0.381 5.381 11 C 0.392 3.608 12 O -0.481 6.481 13 N -0.406 5.406 14 C 0.038 3.962 15 H 0.119 0.881 16 C -0.207 4.207 17 C -0.033 4.033 18 O -0.277 6.277 19 C 0.060 3.940 20 C -0.142 4.142 21 C -0.154 4.154 22 C -0.158 4.158 23 C -0.150 4.150 24 C -0.169 4.169 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.218 0.782 29 H 0.229 0.771 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.655 -20.504 -1.914 22.338 hybrid contribution 0.946 1.168 0.134 1.509 sum 9.601 -19.336 -1.780 21.661 Atomic orbital electron populations 1.69987 1.06089 1.27135 1.49104 1.24945 0.94908 0.99405 0.94791 0.86362 0.79821 0.82996 0.77722 1.19658 1.20814 1.20828 1.21270 0.93305 0.90437 1.52910 0.91902 1.18979 0.87777 0.81090 0.97572 1.45720 1.10769 1.04413 1.77192 1.16175 0.85229 0.81089 0.78258 1.90865 1.14248 1.84231 1.58710 1.45323 1.08975 1.04356 1.81920 1.21912 0.97580 0.81020 0.95692 0.88138 1.23452 1.00551 0.98586 0.98130 1.23428 0.89625 0.97111 0.93123 1.89093 1.30052 1.84995 1.23605 1.22153 0.91905 0.92557 0.87400 1.21446 0.96722 0.97579 0.98434 1.21500 0.97565 0.96478 0.99843 1.21544 0.98592 0.97510 0.98118 1.21443 0.96848 0.97458 0.99300 1.21873 0.98205 0.96674 1.00167 0.92536 0.95762 0.95780 0.78199 0.77091 0.89982 0.90006 0.89243 0.92329 0.90241 0.91126 0.91283 0.91978 0.92162 0.92078 0.91393 0.92140 0.91320 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.54 -14.81 9.28 -34.44 -0.32 -15.13 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.27 7.20 5.43 -5.19 -0.03 7.17 16 10 N -0.73 -15.75 5.55 -66.41 -0.37 -16.11 16 11 C 0.69 14.34 8.57 -86.92 -0.74 13.60 16 12 O -0.60 -14.98 16.02 5.28 0.08 -14.90 16 13 N -0.75 -11.40 4.46 -57.32 -0.26 -11.66 16 14 C 0.15 1.95 2.83 -66.55 -0.19 1.76 16 15 H 0.10 1.52 7.31 -51.93 -0.38 1.14 16 16 C -0.17 -2.06 6.88 -25.09 -0.17 -2.24 16 17 C 0.04 0.44 7.20 37.95 0.27 0.72 16 18 O -0.36 -4.10 10.11 -35.23 -0.36 -4.46 16 19 C 0.10 1.09 0.65 -90.63 -0.06 1.03 16 20 C -0.10 -1.08 4.25 -26.96 -0.11 -1.20 16 21 C -0.12 -1.06 5.82 -26.68 -0.16 -1.22 16 22 C -0.12 -1.00 5.91 -26.73 -0.16 -1.16 16 23 C -0.11 -0.96 5.82 -26.68 -0.16 -1.12 16 24 C -0.13 -1.25 4.63 -26.95 -0.12 -1.38 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.39 7.17 8.34 -40.82 -0.34 6.83 16 29 H 0.39 5.13 6.41 -40.82 -0.26 4.87 16 30 H 0.08 1.13 7.97 -51.93 -0.41 0.71 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.51 7.27 -51.93 -0.38 0.13 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.74 6.17 -51.93 -0.32 0.42 16 36 H 0.07 0.68 7.83 -51.93 -0.41 0.27 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.62 7.83 -51.93 -0.41 0.21 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.62 6.97 -51.93 -0.36 0.26 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 336.45 15.07 5.07 5.07 Total: -1.00 -32.31 336.45 -9.18 -41.49 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -7.03 Total: 7.64 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -2.04 Total: 2.52 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.11 Total: -53.31 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.27 Total: -19.36 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.31 -9.18 -41.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894486915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.651 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds