Wall clock time and date at job start Tue Mar 31 2020 05:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99765 * 2 1 4 4 H 1.48493 * 109.47312 * 270.00025 * 3 2 1 5 5 H 1.48508 * 109.47091 * 30.00255 * 3 2 1 6 6 H 1.48502 * 109.46956 * 149.99893 * 3 2 1 7 7 C 1.37876 * 120.00341 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99980 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99784 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47157 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00204 * 180.02562 * 10 9 7 12 12 O 1.21589 * 119.99571 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00404 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00114 * 179.97438 * 13 11 10 15 15 H 1.08997 * 110.45284 * 327.58379 * 14 13 11 16 16 C 1.54861 * 110.50461 * 90.31923 * 14 13 11 17 17 C 1.55007 * 102.10355 * 139.48561 * 16 14 13 18 18 O 1.44434 * 103.52508 * 323.11343 * 17 16 14 19 19 C 1.43515 * 106.91878 * 39.85021 * 18 17 16 20 20 C 1.52767 * 109.87738 * 214.27160 * 19 18 17 21 21 C 1.53048 * 109.48859 * 298.11908 * 20 19 18 22 22 C 1.52995 * 109.45573 * 300.46915 * 21 20 19 23 23 C 1.52997 * 109.51238 * 60.26122 * 22 21 20 24 24 C 1.52788 * 109.84352 * 92.92167 * 19 18 17 25 25 H 0.97000 * 120.00113 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47414 * 60.00314 * 9 7 2 27 27 H 1.08999 * 109.47702 * 300.00021 * 9 7 2 28 28 H 0.97002 * 120.00000 * 0.02562 * 10 9 7 29 29 H 0.96996 * 119.99364 * 359.97438 * 13 11 10 30 30 H 1.09002 * 110.90623 * 257.69016 * 16 14 13 31 31 H 1.09008 * 110.90663 * 21.25351 * 16 14 13 32 32 H 1.09005 * 110.61409 * 81.62427 * 17 16 14 33 33 H 1.08999 * 110.61421 * 204.44171 * 17 16 14 34 34 H 1.08998 * 109.46572 * 178.11242 * 20 19 18 35 35 H 1.09001 * 109.46336 * 58.12358 * 20 19 18 36 36 H 1.08998 * 109.46855 * 180.47508 * 21 20 19 37 37 H 1.09000 * 109.47748 * 60.47033 * 21 20 19 38 38 H 1.09002 * 109.46244 * 180.27160 * 22 21 20 39 39 H 1.08998 * 109.46422 * 300.25558 * 22 21 20 40 40 H 1.09002 * 109.47879 * 59.71526 * 23 22 21 41 41 H 1.09001 * 109.47744 * 179.73792 * 23 22 21 42 42 H 1.08997 * 109.46600 * 181.88820 * 24 19 18 43 43 H 1.08999 * 109.46463 * 301.88210 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 6 1.7540 -4.8833 -0.0044 12 8 0.5586 -5.1055 -0.0046 13 7 2.6298 -5.9077 -0.0048 14 6 2.1415 -7.2889 -0.0060 15 1 1.2015 -7.3611 0.5410 16 6 1.9689 -7.8020 -1.4569 17 6 2.4990 -9.2549 -1.3531 18 8 3.6010 -9.1470 -0.4258 19 6 3.1934 -8.2330 0.6029 20 6 4.3957 -7.4228 1.0842 21 6 5.4394 -8.3666 1.6863 22 6 4.8212 -9.1269 2.8613 23 6 3.6261 -9.9452 2.3684 24 6 2.5777 -9.0053 1.7686 25 1 -0.4850 0.8400 0.0004 26 1 0.6249 -2.5563 -0.8920 27 1 0.6242 -2.5575 0.8880 28 1 3.1569 -3.4353 -0.0022 29 1 3.5835 -5.7304 -0.0042 30 1 0.9194 -7.7908 -1.7512 31 1 2.5718 -7.2162 -2.1509 32 1 1.7285 -9.9172 -0.9581 33 1 2.8449 -9.6075 -2.3247 34 1 4.0726 -6.7081 1.8410 35 1 4.8334 -6.8871 0.2418 36 1 6.2934 -7.7873 2.0373 37 1 5.7687 -9.0761 0.9272 38 1 5.5658 -9.7955 3.2932 39 1 4.4878 -8.4170 3.6182 40 1 3.9583 -10.6519 1.6079 41 1 3.1890 -10.4903 3.2050 42 1 2.2400 -8.3035 2.5312 43 1 1.7295 -9.5885 1.4103 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894486916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:03 Heat of formation + Delta-G solvation = -91.314429 kcal Electronic energy + Delta-G solvation = -23122.833544 eV Core-core repulsion = 19781.206644 eV Total energy + Delta-G solvation = -3341.626900 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.91880 -38.82063 -36.59753 -34.60340 -33.95901 -32.33072 -31.19589 -30.51956 -30.15549 -27.09028 -25.25144 -23.18918 -22.68525 -22.17663 -20.79728 -19.93877 -19.40336 -18.20435 -16.81700 -16.18214 -15.72976 -15.59321 -15.19636 -14.84407 -14.66985 -14.46458 -14.00512 -13.78151 -13.43208 -13.17024 -12.97362 -12.52632 -12.31083 -12.29616 -11.98129 -11.86102 -11.71073 -11.45112 -11.29570 -11.10169 -10.95849 -10.87281 -10.63099 -10.50393 -10.30739 -10.20463 -9.64937 -9.40696 -9.36414 -8.77137 -8.67227 -7.76579 -6.14957 -4.21520 3.25074 3.27209 3.32110 3.36324 3.69666 3.90702 4.33119 4.45607 4.50618 4.54058 4.77329 4.87774 4.99985 5.06031 5.06839 5.17888 5.21182 5.26833 5.29906 5.38189 5.44612 5.53554 5.61290 5.65798 5.76209 5.85679 5.93406 5.99766 6.02724 6.05450 6.08160 6.13747 6.31130 6.83652 6.87438 7.11640 7.51602 7.55349 7.57483 7.90753 8.04522 8.76800 8.94044 9.33335 9.48407 10.95289 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026365 B = 0.003616 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.755727 B = 7741.041217 C = 8244.840656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.729 5.729 11 C 0.692 3.308 12 O -0.601 6.601 13 N -0.749 5.749 14 C 0.144 3.856 15 H 0.102 0.898 16 C -0.168 4.168 17 C 0.046 3.954 18 O -0.360 6.360 19 C 0.102 3.898 20 C -0.113 4.113 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.113 4.113 24 C -0.128 4.128 25 H 0.266 0.734 26 H 0.024 0.976 27 H 0.025 0.975 28 H 0.386 0.614 29 H 0.394 0.606 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.927 -19.753 1.917 22.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.381 5.381 11 C 0.392 3.608 12 O -0.480 6.480 13 N -0.409 5.409 14 C 0.037 3.963 15 H 0.120 0.880 16 C -0.207 4.207 17 C -0.031 4.031 18 O -0.279 6.279 19 C 0.061 3.939 20 C -0.150 4.150 21 C -0.152 4.152 22 C -0.158 4.158 23 C -0.151 4.151 24 C -0.166 4.166 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.218 0.782 29 H 0.231 0.769 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.824 -19.863 1.919 21.820 hybrid contribution 0.976 1.239 -0.112 1.582 sum 9.801 -18.624 1.807 21.122 Atomic orbital electron populations 1.69981 1.06089 1.27255 1.48984 1.24943 0.94907 0.99388 0.94767 0.86416 0.79610 0.82678 0.78196 1.20490 1.21010 1.19769 1.21227 0.93266 0.90448 1.53081 0.91957 1.18978 0.87768 0.81061 0.97588 1.45719 1.10767 1.04408 1.77172 1.16185 0.85250 0.81111 0.78243 1.90863 1.14263 1.84218 1.58651 1.45413 1.09096 1.04357 1.81999 1.22001 0.97765 0.80958 0.95617 0.87978 1.23611 1.03037 0.96179 0.97912 1.23520 0.89548 0.96228 0.93824 1.88878 1.37657 1.64498 1.36870 1.22077 0.94222 0.89036 0.88522 1.21629 0.94980 0.97719 1.00716 1.21465 0.97454 0.98472 0.97827 1.21540 0.97490 0.98940 0.97791 1.21439 0.95608 0.97910 1.00111 1.21943 0.98319 0.99050 0.97329 0.92471 0.95779 0.95737 0.78213 0.76917 0.89668 0.90071 0.92172 0.88990 0.90096 0.91206 0.92050 0.91274 0.92187 0.92091 0.91343 0.92242 0.90750 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.18 5.43 -5.19 -0.03 7.15 16 10 N -0.73 -15.62 5.55 -66.41 -0.37 -15.99 16 11 C 0.69 14.24 8.57 -86.92 -0.74 13.50 16 12 O -0.60 -14.91 15.99 5.29 0.08 -14.82 16 13 N -0.75 -11.28 4.50 -57.26 -0.26 -11.54 16 14 C 0.14 1.93 3.01 -66.48 -0.20 1.73 16 15 H 0.10 1.56 7.09 -51.93 -0.37 1.19 16 16 C -0.17 -2.05 6.88 -24.69 -0.17 -2.22 16 17 C 0.05 0.46 7.66 38.22 0.29 0.75 16 18 O -0.36 -4.09 9.72 -35.23 -0.34 -4.43 16 19 C 0.10 1.13 0.71 -90.38 -0.06 1.06 16 20 C -0.11 -1.16 3.65 -26.83 -0.10 -1.26 16 21 C -0.11 -1.05 5.80 -26.71 -0.15 -1.21 16 22 C -0.12 -1.04 5.91 -26.74 -0.16 -1.20 16 23 C -0.11 -1.02 5.80 -26.71 -0.15 -1.17 16 24 C -0.13 -1.31 4.65 -26.82 -0.12 -1.43 16 25 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.39 7.08 8.34 -40.82 -0.34 6.74 16 29 H 0.39 4.97 5.92 -40.82 -0.24 4.73 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.08 1.03 8.06 -51.92 -0.42 0.62 16 32 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.87 7.84 -51.93 -0.41 0.46 16 35 H 0.07 0.70 6.78 -51.93 -0.35 0.35 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.68 7.76 -51.93 -0.40 0.28 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.65 7.76 -51.93 -0.40 0.25 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -32.20 337.64 -9.22 -41.41 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.11 Total: 7.61 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -2.02 Total: 2.27 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.11 Total: -53.01 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.26 Total: -19.25 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.20 -9.22 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894486916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.902 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds