Wall clock time and date at job start Tue Mar 31 2020 05:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47239 * 270.00257 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00129 * 175.14052 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21590 * 120.00303 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99704 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99745 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47293 * 179.97438 * 15 14 12 17 17 C 1.52993 * 109.47319 * 179.97438 * 16 15 14 18 18 H 1.08996 * 109.47283 * 305.00070 * 17 16 15 19 19 O 1.42901 * 109.46936 * 65.00085 * 17 16 15 20 20 C 1.53002 * 109.47327 * 185.00121 * 17 16 15 21 21 C 1.52997 * 117.49853 * 248.75256 * 20 17 16 22 22 C 1.52993 * 117.50253 * 180.09084 * 20 17 16 23 23 C 1.53000 * 117.49749 * 129.25937 * 9 7 2 24 24 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 25 25 H 0.96997 * 120.00397 * 4.99464 * 1 2 3 26 26 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 27 27 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 28 28 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 29 29 H 0.96991 * 120.00475 * 0.02562 * 14 12 11 30 30 H 1.08997 * 109.46910 * 300.00341 * 15 14 12 31 31 H 1.09000 * 109.46842 * 59.99932 * 15 14 12 32 32 H 1.09006 * 109.47223 * 300.00621 * 16 15 14 33 33 H 1.09006 * 109.46845 * 59.99947 * 16 15 14 34 34 H 0.96701 * 114.00060 * 60.00144 * 19 17 16 35 35 H 1.09001 * 115.54748 * 34.41641 * 20 17 16 36 36 H 1.09004 * 117.49867 * 359.97438 * 21 20 17 37 37 H 1.08997 * 117.50291 * 145.02053 * 21 20 17 38 38 H 1.09001 * 117.50362 * 214.98100 * 22 20 17 39 39 H 1.09008 * 117.49592 * 359.97438 * 22 20 17 40 40 H 1.08997 * 117.50142 * 359.97438 * 23 9 7 41 41 H 1.09000 * 117.49511 * 145.02011 * 23 9 7 42 42 H 1.08996 * 117.49909 * 214.98045 * 24 9 7 43 43 H 1.09006 * 117.50020 * 359.97109 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1957 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0296 -3.9814 4.0153 14 7 3.2456 -4.0320 4.1593 15 6 3.1885 -4.5908 5.5123 16 6 4.6099 -4.8022 6.0373 17 6 4.5503 -5.3852 7.4505 18 1 3.9443 -4.7385 8.0851 19 8 3.9668 -6.6888 7.4038 20 6 5.9659 -5.4803 8.0232 21 6 6.5526 -6.8784 8.2282 22 6 6.1196 -6.0449 9.4369 23 6 1.5730 -3.5795 -0.9303 24 6 0.2452 -2.8210 -1.0000 25 1 -0.4850 0.8368 -0.0731 26 1 0.3751 -2.1632 2.0411 27 1 0.3015 -3.8512 1.4812 28 1 3.0164 -3.0733 1.8316 29 1 4.1039 -3.8565 3.7429 30 1 2.6573 -3.9010 6.1682 31 1 2.6643 -5.5462 5.4890 32 1 5.1407 -5.4922 5.3812 33 1 5.1344 -3.8469 6.0606 34 1 4.4546 -7.3187 6.8556 35 1 6.6495 -4.6870 7.7210 36 1 5.9299 -7.7305 7.9554 37 1 7.6222 -7.0048 8.0613 38 1 6.9047 -5.6232 10.0647 39 1 5.2122 -6.3482 9.9591 40 1 2.3245 -3.3491 -1.6853 41 1 1.5428 -4.6172 -0.5978 42 1 -0.6578 -3.3599 -0.7135 43 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894563097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:16 Heat of formation + Delta-G solvation = -43.762061 kcal Electronic energy + Delta-G solvation = -21768.276406 eV Core-core repulsion = 18428.711531 eV Total energy + Delta-G solvation = -3339.564875 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.59058 -39.05486 -36.78597 -35.63779 -34.62590 -33.22181 -31.95396 -31.20407 -26.96131 -25.74579 -24.76156 -22.89540 -21.94788 -21.16912 -20.90772 -20.17827 -19.36189 -17.72765 -17.07488 -16.39689 -16.25627 -15.80500 -15.42923 -14.91685 -14.61061 -14.36117 -13.93801 -13.74796 -13.50223 -13.17993 -12.80625 -12.62735 -12.18532 -11.92622 -11.83492 -11.56857 -11.36199 -11.28238 -10.99285 -10.92714 -10.89544 -10.52931 -10.51725 -10.21940 -10.19037 -9.68464 -9.42850 -9.02713 -8.80629 -8.47143 -8.21510 -7.95313 -6.06178 -4.15961 3.19005 3.25485 3.33743 3.34701 3.38576 3.83300 4.01832 4.29127 4.35398 4.50283 4.56975 4.71545 4.82577 4.89815 5.10020 5.14043 5.21803 5.29129 5.40871 5.45239 5.52838 5.60906 5.73942 5.78775 5.99301 6.02607 6.07790 6.37281 6.50676 6.62111 6.72783 6.80714 6.88159 7.14334 7.32942 7.35622 7.44211 7.47965 7.64567 7.82019 8.35605 8.69043 8.85260 9.23650 9.50901 11.01038 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023911 B = 0.002971 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.733168 B = 9421.658620 C =10033.193311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.182 3.818 11 N -0.721 5.721 12 C 0.696 3.304 13 O -0.603 6.603 14 N -0.756 5.756 15 C 0.144 3.856 16 C -0.159 4.159 17 C 0.140 3.860 18 H 0.106 0.894 19 O -0.556 6.556 20 C -0.191 4.191 21 C -0.179 4.179 22 C -0.171 4.171 23 C -0.211 4.211 24 C -0.142 4.142 25 H 0.261 0.739 26 H 0.064 0.936 27 H 0.037 0.963 28 H 0.396 0.604 29 H 0.392 0.608 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.374 0.626 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.295 -10.817 12.655 21.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.024 3.976 10 C 0.058 3.942 11 N -0.374 5.374 12 C 0.396 3.604 13 O -0.483 6.483 14 N -0.413 5.413 15 C 0.020 3.980 16 C -0.197 4.197 17 C 0.080 3.920 18 H 0.124 0.876 19 O -0.363 6.363 20 C -0.210 4.210 21 C -0.216 4.216 22 C -0.208 4.208 23 C -0.248 4.248 24 C -0.180 4.180 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.056 0.944 28 H 0.229 0.771 29 H 0.225 0.775 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.222 0.778 35 H 0.128 0.872 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.644 -10.595 13.583 20.793 hybrid contribution 1.736 1.022 -0.849 2.186 sum 13.380 -9.573 12.734 20.804 Atomic orbital electron populations 1.69989 1.05870 1.26850 1.48319 1.24992 0.94825 0.98953 0.94363 0.86619 0.79891 0.83604 0.78034 1.20733 1.21188 1.19868 1.20338 0.92564 0.88623 1.52181 0.92289 1.19051 0.99353 0.93247 0.85986 1.20846 0.83313 0.97683 0.92332 1.45154 1.11209 1.66742 1.14274 1.16063 0.83947 0.78788 0.81590 1.90876 1.27909 1.60552 1.68952 1.45107 1.07593 1.71109 1.17497 1.20995 0.95637 0.99115 0.82295 1.22471 0.97565 1.02540 0.97167 1.21340 0.91298 0.84578 0.94744 0.87587 1.86631 1.55035 1.21435 1.73159 1.23162 0.98872 0.98250 1.00698 1.22962 1.01072 0.94382 1.03162 1.22927 1.03410 1.03824 0.90675 1.23009 1.00688 0.95626 1.05505 1.22465 0.90817 1.01308 1.03435 0.92874 0.91765 0.94424 0.77057 0.77471 0.92016 0.91330 0.90855 0.90249 0.77813 0.87150 0.88209 0.88869 0.88954 0.88338 0.90470 0.91733 0.91787 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.40 12.65 55.43 0.70 -23.70 16 2 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 3 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.50 -12.87 8.59 -34.44 -0.30 -13.17 16 8 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 9 C 0.02 0.58 1.47 -155.66 -0.23 0.35 16 10 C 0.18 4.23 5.50 -4.04 -0.02 4.21 16 11 N -0.72 -14.33 5.48 -65.22 -0.36 -14.68 16 12 C 0.70 13.65 8.57 -86.91 -0.74 12.91 16 13 O -0.60 -14.35 16.34 5.29 0.09 -14.27 16 14 N -0.76 -10.78 5.56 -65.22 -0.36 -11.14 16 15 C 0.14 1.80 5.57 -4.04 -0.02 1.77 16 16 C -0.16 -1.30 4.99 -26.74 -0.13 -1.43 16 17 C 0.14 1.11 3.33 -26.73 -0.09 1.02 16 18 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 19 O -0.56 -4.97 12.03 -35.23 -0.42 -5.39 16 20 C -0.19 -1.28 5.70 -90.62 -0.52 -1.80 16 21 C -0.18 -1.09 9.74 -26.70 -0.26 -1.35 16 22 C -0.17 -1.15 10.19 -26.70 -0.27 -1.43 16 23 C -0.21 -4.44 9.96 -26.69 -0.27 -4.70 16 24 C -0.14 -3.29 9.14 -26.70 -0.24 -3.54 16 25 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 26 H 0.06 1.70 8.14 -51.93 -0.42 1.28 16 27 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 28 H 0.40 7.10 8.35 -40.82 -0.34 6.76 16 29 H 0.39 4.44 8.49 -40.82 -0.35 4.09 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.96 7.82 -51.93 -0.41 0.55 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.37 2.25 7.56 45.56 0.34 2.60 16 35 H 0.11 0.68 8.11 -51.93 -0.42 0.26 16 36 H 0.10 0.57 6.37 -51.93 -0.33 0.23 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.73 8.14 -51.92 -0.42 0.30 16 40 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 43 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 359.75 15.07 5.42 5.42 Total: -1.00 -31.60 359.75 -9.69 -41.29 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -6.54 Total: 12.22 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -3.19 Total: -5.31 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.02 Total: -49.53 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.34 Total: -19.66 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.60 -9.69 -41.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894563097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.472 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds