Wall clock time and date at job start Tue Mar 31 2020 05:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99736 * 2 1 4 4 H 1.48501 * 109.46996 * 270.00002 * 3 2 1 5 5 H 1.48505 * 109.47390 * 29.99894 * 3 2 1 6 6 H 1.48503 * 109.47242 * 150.00183 * 3 2 1 7 7 C 1.37870 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99983 * 173.55553 * 7 2 1 9 9 C 1.50697 * 120.00191 * 353.55966 * 7 2 1 10 10 C 1.53005 * 115.54927 * 85.40713 * 9 7 2 11 11 N 1.46500 * 109.46942 * 65.12975 * 10 9 7 12 12 C 1.34782 * 119.99942 * 178.21726 * 11 10 9 13 13 O 1.21583 * 119.99622 * 0.26827 * 12 11 10 14 14 N 1.34770 * 119.99918 * 180.27587 * 12 11 10 15 15 C 1.46505 * 119.99997 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47199 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.46718 * 179.97438 * 16 15 14 18 18 H 1.08997 * 109.47564 * 55.00032 * 17 16 15 19 19 O 1.42903 * 109.46933 * 294.99359 * 17 16 15 20 20 C 1.53001 * 109.46584 * 174.99767 * 17 16 15 21 21 C 1.52997 * 117.50059 * 248.74374 * 20 17 16 22 22 C 1.53000 * 117.49825 * 180.08257 * 20 17 16 23 23 C 1.53005 * 117.50005 * 231.07837 * 9 7 2 24 24 C 1.52995 * 117.50230 * 299.73800 * 9 7 2 25 25 H 0.97003 * 120.00760 * 5.06540 * 1 2 3 26 26 H 1.08999 * 109.47098 * 305.12838 * 10 9 7 27 27 H 1.09001 * 109.47169 * 185.12356 * 10 9 7 28 28 H 0.96998 * 120.00062 * 358.49050 * 11 10 9 29 29 H 0.96999 * 120.00718 * 359.97438 * 14 12 11 30 30 H 1.09009 * 109.46638 * 299.99747 * 15 14 12 31 31 H 1.08997 * 109.47154 * 59.99301 * 15 14 12 32 32 H 1.08999 * 109.46658 * 299.99500 * 16 15 14 33 33 H 1.08994 * 109.47373 * 60.00133 * 16 15 14 34 34 H 0.96691 * 114.00144 * 300.00148 * 19 17 16 35 35 H 1.09003 * 115.55270 * 34.41867 * 20 17 16 36 36 H 1.09000 * 117.49770 * 359.97438 * 21 20 17 37 37 H 1.08996 * 117.50372 * 145.02227 * 21 20 17 38 38 H 1.08997 * 117.50659 * 214.98124 * 22 20 17 39 39 H 1.09001 * 117.49968 * 0.02562 * 22 20 17 40 40 H 1.09006 * 117.49485 * 215.00160 * 23 9 7 41 41 H 1.08992 * 117.49885 * 0.02562 * 23 9 7 42 42 H 1.09009 * 117.49505 * 359.97438 * 24 9 7 43 43 H 1.08997 * 117.50195 * 144.96842 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0794 -1.1969 -0.1044 9 6 1.2582 -2.4949 0.1475 10 6 0.7023 -3.0869 -1.1493 11 7 1.8115 -3.4596 -2.0307 12 6 1.5606 -4.0381 -3.2219 13 8 0.4134 -4.2461 -3.5670 14 7 2.5812 -4.3860 -4.0304 15 6 2.3084 -5.0143 -5.3255 16 6 3.6298 -5.3053 -6.0396 17 6 3.3448 -5.9620 -7.3919 18 1 2.6696 -5.3294 -7.9680 19 8 2.7389 -7.2392 -7.1828 20 6 4.6566 -6.1393 -8.1591 21 6 4.8647 -5.2832 -9.4100 22 6 4.5827 -6.7816 -9.5458 23 6 1.7470 -3.4728 1.2180 24 6 0.4417 -2.7006 1.4249 25 1 -0.4851 0.8367 -0.0742 26 1 0.0755 -2.3471 -1.6470 27 1 0.1080 -3.9713 -0.9195 28 1 2.7267 -3.2937 -1.7553 29 1 3.4963 -4.2199 -3.7553 30 1 1.7660 -5.9470 -5.1698 31 1 1.7063 -4.3415 -5.9361 32 1 4.1717 -4.3725 -6.1953 33 1 4.2322 -5.9780 -5.4292 34 1 3.2850 -7.8554 -6.6758 35 1 5.5323 -6.3595 -7.5486 36 1 4.0668 -4.5940 -9.6866 37 1 5.8773 -4.9405 -9.6226 38 1 5.4098 -7.4240 -9.8478 39 1 3.5994 -7.0775 -9.9117 40 1 1.6726 -4.5379 0.9983 41 1 2.6081 -3.1750 1.8162 42 1 0.4446 -1.8950 2.1592 43 1 -0.4918 -3.2572 1.3414 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894563099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:19 Heat of formation + Delta-G solvation = -45.170525 kcal Electronic energy + Delta-G solvation = -21733.578872 eV Core-core repulsion = 18393.952921 eV Total energy + Delta-G solvation = -3339.625951 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.49799 -38.87252 -36.78946 -35.93023 -34.65474 -33.20092 -31.96412 -31.06966 -26.85435 -25.68933 -24.72777 -22.71824 -21.97697 -21.29512 -21.14070 -20.19531 -19.35496 -17.70224 -16.94145 -16.31995 -16.03041 -15.84755 -15.37483 -14.85977 -14.65707 -14.43446 -13.95561 -13.69508 -13.51910 -13.26625 -12.88952 -12.63652 -12.09810 -11.89669 -11.85456 -11.57227 -11.28664 -11.15386 -10.99772 -10.91868 -10.91048 -10.57614 -10.52227 -10.25493 -10.20045 -9.69829 -9.48201 -8.95184 -8.78328 -8.48349 -8.23487 -7.92974 -6.06538 -4.15216 3.19665 3.25746 3.33654 3.35105 3.36647 3.85712 4.12861 4.25187 4.35670 4.50062 4.66592 4.69664 4.81032 4.89040 5.10942 5.15496 5.21705 5.29962 5.38987 5.47839 5.50993 5.56306 5.75733 5.81528 6.01305 6.03810 6.07960 6.36459 6.49640 6.62613 6.71213 6.82276 6.88721 7.10821 7.36999 7.39206 7.44042 7.49814 7.63692 7.82249 8.35595 8.70857 8.85432 9.25915 9.51337 11.01320 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022510 B = 0.003014 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.602454 B = 9287.452645 C =10017.515997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.500 4.500 8 H 0.059 0.941 9 C 0.028 3.972 10 C 0.182 3.818 11 N -0.721 5.721 12 C 0.697 3.303 13 O -0.603 6.603 14 N -0.756 5.756 15 C 0.144 3.856 16 C -0.159 4.159 17 C 0.141 3.859 18 H 0.101 0.899 19 O -0.555 6.555 20 C -0.194 4.194 21 C -0.174 4.174 22 C -0.168 4.168 23 C -0.211 4.211 24 C -0.148 4.148 25 H 0.262 0.738 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.395 0.605 29 H 0.392 0.608 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.375 0.625 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.115 -11.439 -13.646 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.027 3.973 10 C 0.058 3.942 11 N -0.373 5.373 12 C 0.396 3.604 13 O -0.482 6.482 14 N -0.413 5.413 15 C 0.020 3.980 16 C -0.198 4.198 17 C 0.081 3.919 18 H 0.119 0.881 19 O -0.360 6.360 20 C -0.212 4.212 21 C -0.211 4.211 22 C -0.205 4.205 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.052 0.948 28 H 0.228 0.772 29 H 0.225 0.775 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.222 0.778 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.350 -11.205 -14.211 20.370 hybrid contribution 1.843 0.998 0.586 2.176 sum 11.193 -10.207 -13.625 20.374 Atomic orbital electron populations 1.69974 1.05888 1.26920 1.48199 1.24986 0.94800 0.98935 0.94339 0.86633 0.79904 0.83597 0.78111 1.20701 1.21163 1.19858 1.20325 0.92771 0.88657 1.52041 0.92277 1.19041 0.98579 0.93869 0.85772 1.20844 0.86660 0.96639 0.90031 1.45139 1.11227 1.63693 1.17263 1.16052 0.84609 0.78877 0.80825 1.90875 1.19898 1.61929 1.75541 1.45104 1.08332 1.67968 1.19912 1.20989 0.95873 0.98067 0.83096 1.22477 0.98156 1.02290 0.96829 1.21390 0.91858 0.84911 0.93713 0.88087 1.86625 1.47282 1.24517 1.77596 1.23086 1.00107 1.06826 0.91185 1.22975 1.03035 0.94116 1.00994 1.22875 1.03350 0.95485 0.98770 1.23017 0.98635 0.95686 1.07467 1.22492 0.92302 1.01072 1.02732 0.92838 0.91237 0.94762 0.77171 0.77497 0.91306 0.92077 0.90168 0.90934 0.77821 0.87618 0.88477 0.88676 0.88873 0.88297 0.91652 0.90424 0.89826 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.48 12.91 55.43 0.72 -23.76 16 2 C 0.07 1.96 5.39 -17.82 -0.10 1.87 16 3 Si 0.89 20.59 29.55 -169.99 -5.02 15.57 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.50 -12.92 8.63 -34.44 -0.30 -13.22 16 8 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.03 0.67 1.38 -155.66 -0.21 0.45 16 10 C 0.18 4.25 5.50 -4.04 -0.02 4.23 16 11 N -0.72 -14.40 5.48 -65.22 -0.36 -14.76 16 12 C 0.70 13.78 8.57 -86.92 -0.74 13.03 16 13 O -0.60 -14.48 16.34 5.29 0.09 -14.40 16 14 N -0.76 -10.89 5.56 -65.22 -0.36 -11.25 16 15 C 0.14 1.82 5.57 -4.04 -0.02 1.80 16 16 C -0.16 -1.32 4.99 -26.73 -0.13 -1.45 16 17 C 0.14 1.14 3.16 -26.73 -0.08 1.06 16 18 H 0.10 0.90 7.90 -51.93 -0.41 0.49 16 19 O -0.56 -5.07 12.78 -35.23 -0.45 -5.52 16 20 C -0.19 -1.31 5.36 -90.62 -0.49 -1.80 16 21 C -0.17 -1.14 10.18 -26.69 -0.27 -1.42 16 22 C -0.17 -1.13 10.16 -26.69 -0.27 -1.40 16 23 C -0.21 -4.40 9.96 -26.69 -0.27 -4.67 16 24 C -0.15 -3.40 9.42 -26.70 -0.25 -3.66 16 25 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 26 H 0.07 1.87 8.14 -51.93 -0.42 1.45 16 27 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 28 H 0.39 7.08 8.38 -40.82 -0.34 6.74 16 29 H 0.39 4.47 8.49 -40.82 -0.35 4.13 16 30 H 0.07 0.97 7.82 -51.92 -0.41 0.56 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.37 2.19 9.04 45.56 0.41 2.60 16 35 H 0.11 0.64 8.11 -51.93 -0.42 0.22 16 36 H 0.10 0.64 8.05 -51.93 -0.42 0.22 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.08 2.04 8.14 -51.92 -0.42 1.61 16 43 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 363.80 15.07 5.48 5.48 Total: -1.00 -31.86 363.80 -9.62 -41.48 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -6.55 Total: 12.32 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -3.16 Total: -5.16 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.00 Total: -49.77 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.36 Total: -19.92 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.86 -9.62 -41.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894563099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.692 kcal (2) G-P(sol) polarization free energy of solvation -31.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds