Wall clock time and date at job start Tue Mar 31 2020 05:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86812 * 120.00073 * 2 1 4 4 H 1.48499 * 109.47052 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46956 * 300.00110 * 3 2 1 6 6 H 1.48493 * 109.46952 * 60.00362 * 3 2 1 7 7 C 1.38952 * 120.00350 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00179 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99671 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00135 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99908 * 0.02562 * 10 9 7 12 12 C 1.50689 * 120.00080 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.47350 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47375 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46922 * 299.99838 * 14 13 12 16 16 N 1.46898 * 109.46877 * 180.02562 * 15 14 13 17 17 C 1.47015 * 110.99642 * 298.63124 * 16 15 14 18 18 C 1.53098 * 109.25723 * 177.60943 * 17 16 15 19 19 O 1.43023 * 109.25952 * 56.85124 * 18 17 16 20 20 C 1.43014 * 113.73189 * 301.32868 * 19 18 17 21 21 C 1.47016 * 110.99994 * 175.00122 * 16 15 14 22 22 C 1.52992 * 109.47048 * 60.00092 * 15 14 13 23 23 C 1.53001 * 109.47332 * 300.00188 * 12 10 9 24 24 H 0.97006 * 119.99959 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99607 * 359.97438 * 9 7 2 26 26 H 1.08996 * 109.47759 * 60.00213 * 12 10 9 27 27 H 1.08996 * 109.47416 * 59.99429 * 13 12 10 28 28 H 1.09005 * 109.46661 * 300.00098 * 13 12 10 29 29 H 1.09003 * 109.46798 * 179.97438 * 14 13 12 30 30 H 1.09000 * 109.47123 * 59.99739 * 14 13 12 31 31 H 1.08996 * 109.46660 * 299.99929 * 15 14 13 32 32 H 1.08999 * 109.50673 * 297.54208 * 17 16 15 33 33 H 1.09004 * 109.50788 * 57.67624 * 17 16 15 34 34 H 1.08997 * 109.51060 * 296.91507 * 18 17 16 35 35 H 1.08998 * 109.54334 * 176.80599 * 18 17 16 36 36 H 1.08999 * 109.51224 * 298.73604 * 20 19 18 37 37 H 1.09005 * 109.53853 * 178.62625 * 20 19 18 38 38 H 1.09000 * 109.50136 * 302.32362 * 21 16 15 39 39 H 1.08995 * 109.50491 * 62.44945 * 21 16 15 40 40 H 1.08996 * 109.47524 * 60.00366 * 22 15 14 41 41 H 1.09006 * 109.47210 * 180.02562 * 22 15 14 42 42 H 1.09000 * 109.47157 * 300.00067 * 23 12 10 43 43 H 1.09003 * 109.47254 * 60.00219 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2438 -4.8628 -0.0022 13 6 2.2380 -6.0258 -0.0027 14 6 1.4730 -7.3509 -0.0039 15 6 0.5930 -7.4328 1.2450 16 7 -0.1411 -8.7052 1.2441 17 6 -1.0227 -8.8039 0.0718 18 6 -1.7215 -10.1661 0.0788 19 8 -2.4354 -10.3238 1.3081 20 6 -1.6071 -10.2339 2.4704 21 6 -0.9072 -8.8724 2.4877 22 6 -0.4012 -6.2699 1.2455 23 6 0.3646 -4.9448 1.2473 24 1 -0.4850 0.8401 0.0004 25 1 0.3534 -2.3906 0.0002 26 1 0.6168 -4.9201 -0.8919 27 1 2.8647 -5.9685 0.8872 28 1 2.8646 -5.9676 -0.8927 29 1 2.1814 -8.1793 -0.0048 30 1 0.8466 -7.4079 -0.8941 31 1 1.2194 -7.3757 2.1351 32 1 -1.7700 -8.0114 0.1107 33 1 -0.4311 -8.7030 -0.8381 34 1 -0.9775 -10.9573 -0.0140 35 1 -2.4189 -10.2225 -0.7569 36 1 -0.8597 -11.0270 2.4471 37 1 -2.2213 -10.3388 3.3648 38 1 -0.2312 -8.8214 3.3412 39 1 -1.6525 -8.0809 2.5651 40 1 -1.0276 -6.3270 0.3554 41 1 -1.0279 -6.3280 2.1355 42 1 0.9916 -4.8876 2.1371 43 1 -0.3438 -4.1163 1.2481 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900464671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:00 Heat of formation + Delta-G solvation = -94.982276 kcal Electronic energy + Delta-G solvation = -22985.595291 eV Core-core repulsion = 19643.809341 eV Total energy + Delta-G solvation = -3341.785950 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.32669 -38.84167 -37.32522 -34.74564 -33.90367 -31.55236 -31.28616 -30.41861 -29.84949 -26.62620 -24.87080 -24.29397 -22.58805 -22.25189 -20.79394 -19.29194 -18.82937 -17.87606 -16.85676 -16.34017 -15.93319 -15.33134 -15.23535 -14.90684 -14.67117 -14.44621 -14.15825 -14.05455 -13.68133 -13.46876 -12.77937 -12.62564 -12.38335 -12.07949 -11.83338 -11.73483 -11.63409 -11.56278 -11.12941 -11.11207 -10.84022 -10.73607 -10.56603 -10.34712 -10.27762 -10.10949 -10.00896 -9.76626 -9.52291 -8.40801 -8.29165 -7.96631 -6.42223 -3.82902 3.15493 3.26093 3.33419 3.55915 3.72159 3.90934 4.17323 4.64127 4.71778 4.75948 4.89309 4.93342 4.94872 5.00410 5.09955 5.24867 5.29231 5.32164 5.39898 5.45463 5.50430 5.56617 5.61064 5.65862 5.68783 5.72306 5.79755 5.93935 6.04119 6.15097 6.19053 6.32785 6.36991 6.53083 6.68004 6.73910 6.84684 6.90411 6.94592 7.54848 8.06429 8.61009 9.17628 9.55543 10.06920 10.75495 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036228 B = 0.003350 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.687568 B = 8356.335729 C = 8705.716023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.444 3.556 11 O -0.596 6.596 12 C -0.097 4.097 13 C -0.091 4.091 14 C -0.109 4.109 15 C 0.085 3.915 16 N -0.531 5.531 17 C 0.009 3.991 18 C 0.064 3.936 19 O -0.388 6.388 20 C 0.065 3.935 21 C 0.013 3.987 22 C -0.148 4.148 23 C -0.104 4.104 24 H 0.271 0.729 25 H 0.392 0.608 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.466 -18.412 2.626 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.755 3.245 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.197 5.197 10 C 0.231 3.769 11 O -0.482 6.482 12 C -0.119 4.119 13 C -0.130 4.130 14 C -0.147 4.147 15 C -0.023 4.023 16 N -0.254 5.254 17 C -0.119 4.119 18 C -0.013 4.013 19 O -0.307 6.307 20 C -0.013 4.013 21 C -0.115 4.115 22 C -0.187 4.187 23 C -0.143 4.143 24 H 0.081 0.919 25 H 0.226 0.774 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.640 -18.668 2.609 19.412 hybrid contribution -0.577 1.751 0.044 1.845 sum -5.217 -16.916 2.654 17.901 Atomic orbital electron populations 1.69620 1.05936 1.28026 1.50696 1.25261 0.95621 0.99711 0.97343 0.85819 0.79733 0.81200 0.77715 1.19223 1.20750 1.20747 1.19780 0.93411 0.82387 1.47426 0.87923 1.41927 1.09199 1.04680 1.63904 1.19916 0.88139 0.84918 0.83973 1.90506 1.14049 1.87403 1.56233 1.21165 0.97304 0.94608 0.98787 1.21230 0.96914 0.91451 1.03362 1.21633 0.98342 0.98140 0.96568 1.21816 0.94615 0.85918 0.99967 1.62511 1.26888 1.34269 1.01772 1.22882 0.96016 0.97794 0.95209 1.22680 0.95899 0.95943 0.86804 1.87975 1.35172 1.93231 1.14280 1.22653 0.94114 0.95960 0.88529 1.22801 0.97254 0.97897 0.93545 1.22215 0.98708 0.95947 1.01853 1.21459 0.98254 0.96640 0.97918 0.91936 0.77438 0.90348 0.91381 0.91228 0.91279 0.92112 0.89738 0.93326 0.89177 0.92442 0.88645 0.92434 0.88678 0.89713 0.93456 0.91655 0.92058 0.91605 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 9 N -0.56 -14.34 5.18 -10.97 -0.06 -14.40 16 10 C 0.44 10.54 7.11 -10.99 -0.08 10.46 16 11 O -0.60 -16.29 15.56 5.54 0.09 -16.20 16 12 C -0.10 -1.70 2.53 -91.78 -0.23 -1.93 16 13 C -0.09 -1.43 4.49 -26.73 -0.12 -1.55 16 14 C -0.11 -1.34 5.01 -26.73 -0.13 -1.47 16 15 C 0.08 0.99 2.23 -67.72 -0.15 0.84 16 16 N -0.53 -5.66 4.72 -226.34 -1.07 -6.72 16 17 C 0.01 0.09 4.86 -3.71 -0.02 0.07 16 18 C 0.06 0.58 7.01 37.21 0.26 0.84 16 19 O -0.39 -4.23 10.83 -35.23 -0.38 -4.61 16 20 C 0.06 0.58 7.01 37.21 0.26 0.84 16 21 C 0.01 0.13 5.31 -3.71 -0.02 0.11 16 22 C -0.15 -1.85 4.50 -26.71 -0.12 -1.97 16 23 C -0.10 -1.61 5.10 -26.70 -0.14 -1.75 16 24 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.39 9.62 7.32 -40.82 -0.30 9.32 16 26 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 27 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 28 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.71 6.38 -51.93 -0.33 0.38 16 31 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 32 H 0.05 0.53 6.42 -51.93 -0.33 0.19 16 33 H 0.09 0.85 6.22 -51.93 -0.32 0.53 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 39 H 0.05 0.49 6.56 -51.93 -0.34 0.15 16 40 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 41 H 0.06 0.73 6.58 -51.93 -0.34 0.39 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.07 1.13 7.56 -51.93 -0.39 0.73 16 LS Contribution 328.93 15.07 4.96 4.96 Total: -1.00 -31.05 328.93 -8.34 -39.39 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -6.85 Total: 8.97 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -0.73 Total: -3.59 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -0.40 Total: -45.03 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.30 Total: -20.81 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.05 -8.34 -39.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900464671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.594 kcal (2) G-P(sol) polarization free energy of solvation -31.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds