Wall clock time and date at job start Tue Mar 31 2020 06:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99680 * 2 1 4 4 H 1.48499 * 109.47356 * 269.99958 * 3 2 1 5 5 H 1.48507 * 109.46933 * 30.00092 * 3 2 1 6 6 H 1.48501 * 109.47263 * 149.99747 * 3 2 1 7 7 C 1.37876 * 120.00592 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00094 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99890 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46941 * 300.00004 * 9 7 2 11 11 O 1.42902 * 109.47054 * 59.99662 * 9 7 2 12 12 C 1.52999 * 109.46975 * 179.97438 * 9 7 2 13 13 N 1.46900 * 109.47028 * 179.73310 * 12 9 7 14 14 C 1.46850 * 111.00127 * 294.03642 * 13 12 9 15 15 C 1.53035 * 109.52584 * 174.15740 * 14 13 12 16 16 C 1.53128 * 109.27725 * 59.17920 * 15 14 13 17 17 C 1.53114 * 109.15832 * 302.34562 * 16 15 14 18 18 H 1.09005 * 109.50401 * 297.71406 * 17 16 15 19 19 N 1.46503 * 109.50168 * 177.59494 * 17 16 15 20 20 C 1.46760 * 124.34837 * 119.72966 * 19 17 16 21 21 C 1.54654 * 105.38604 * 162.85314 * 20 19 17 22 22 C 1.54628 * 101.68170 * 25.76079 * 21 20 19 23 23 C 1.34411 * 124.34938 * 300.02207 * 19 17 16 24 24 O 1.21283 * 124.94268 * 0.43286 * 23 19 17 25 25 C 1.46842 * 111.00248 * 169.82376 * 13 12 9 26 26 H 0.96997 * 120.00619 * 0.02562 * 1 2 3 27 27 H 0.96694 * 113.99821 * 60.00374 * 11 9 7 28 28 H 1.08998 * 109.47277 * 59.73873 * 12 9 7 29 29 H 1.08998 * 109.47435 * 299.73038 * 12 9 7 30 30 H 1.09004 * 109.46014 * 294.17400 * 14 13 12 31 31 H 1.09005 * 109.46344 * 54.14015 * 14 13 12 32 32 H 1.08996 * 109.50745 * 179.11406 * 15 14 13 33 33 H 1.08999 * 109.50438 * 299.20034 * 15 14 13 34 34 H 1.09000 * 109.52216 * 62.25043 * 16 15 14 35 35 H 1.08997 * 109.51854 * 182.44168 * 16 15 14 36 36 H 1.09004 * 110.24523 * 281.98126 * 20 19 17 37 37 H 1.08996 * 110.25066 * 43.97756 * 20 19 17 38 38 H 1.09002 * 111.19470 * 267.59600 * 21 20 19 39 39 H 1.09000 * 110.86011 * 143.78708 * 21 20 19 40 40 H 1.09004 * 110.49117 * 216.30706 * 22 21 20 41 41 H 1.09003 * 110.60072 * 93.72685 * 22 21 20 42 42 H 1.08995 * 109.46154 * 305.85730 * 25 13 12 43 43 H 1.08997 * 109.46220 * 65.82529 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 1 0.6242 -2.5567 0.8903 11 8 0.4301 -2.5751 -1.1665 12 6 2.2456 -3.6620 0.0005 13 7 1.5112 -4.9342 0.0070 14 6 0.7689 -5.1071 1.2622 15 6 -0.0959 -6.3667 1.1758 16 6 0.8026 -7.5802 0.9211 17 6 1.6002 -7.3536 -0.3661 18 1 0.9142 -7.2658 -1.2087 19 7 2.5047 -8.4848 -0.5866 20 6 2.4672 -9.3573 -1.7660 21 6 3.8298 -10.0887 -1.7789 22 6 4.2164 -10.0568 -0.2821 23 6 3.4718 -8.8603 0.2680 24 8 3.7122 -8.3189 1.3264 25 6 2.4158 -6.0653 -0.2350 26 1 -0.4851 0.8400 -0.0004 27 1 0.9225 -2.5300 -1.9975 28 1 2.8753 -3.6015 0.8881 29 1 2.8691 -3.6069 -0.8918 30 1 1.4721 -5.2053 2.0893 31 1 0.1309 -4.2392 1.4293 32 1 -0.6347 -6.5033 2.1133 33 1 -0.8090 -6.2631 0.3579 34 1 1.4896 -7.7068 1.7578 35 1 0.1869 -8.4734 0.8156 36 1 1.6515 -10.0752 -1.6784 37 1 2.3512 -8.7624 -2.6719 38 1 4.5606 -9.5499 -2.3820 39 1 3.7166 -11.1141 -2.1308 40 1 5.2921 -9.9219 -0.1686 41 1 3.8928 -10.9701 0.2172 42 1 2.9739 -5.8935 -1.1553 43 1 3.1112 -6.1591 0.5991 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929622013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:09 Heat of formation + Delta-G solvation = -82.293599 kcal Electronic energy + Delta-G solvation = -23205.002888 eV Core-core repulsion = 19863.767160 eV Total energy + Delta-G solvation = -3341.235728 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.70224 -38.34383 -36.42889 -35.60306 -33.33295 -32.05109 -31.87419 -29.09983 -27.98321 -27.70167 -25.12598 -23.32200 -22.66708 -22.15653 -20.74597 -19.56735 -18.80791 -17.08424 -16.75429 -16.54049 -15.55242 -14.91174 -14.58864 -14.54284 -14.28323 -14.09943 -13.90319 -13.75420 -13.56362 -13.27464 -13.02268 -12.87386 -12.62079 -12.31225 -12.05939 -11.79215 -11.41091 -11.28795 -11.12425 -10.91489 -10.81110 -10.70908 -10.58812 -10.30097 -10.24335 -9.99099 -9.62861 -8.95153 -8.72678 -8.52974 -8.04156 -7.57777 -5.96921 -4.14990 2.53698 2.87309 3.29853 3.36722 3.39840 4.15253 4.22073 4.37439 4.53749 4.56885 4.80881 4.93933 5.02386 5.21124 5.26038 5.28004 5.30864 5.39484 5.44198 5.53184 5.56180 5.68816 5.77870 5.90677 5.99751 6.04453 6.08970 6.13530 6.23866 6.36383 6.48942 6.53821 6.60394 6.70212 6.86773 7.11180 7.60606 7.66873 7.82787 7.93009 8.14955 8.24863 8.89011 9.50222 9.66640 11.07184 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029660 B = 0.003742 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.789928 B = 7481.129889 C = 7752.073820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.574 4.574 8 H 0.054 0.946 9 C 0.238 3.762 10 H 0.055 0.945 11 O -0.554 6.554 12 C 0.033 3.967 13 N -0.523 5.523 14 C 0.053 3.947 15 C -0.110 4.110 16 C -0.131 4.131 17 C 0.164 3.836 18 H 0.096 0.904 19 N -0.615 5.615 20 C 0.101 3.899 21 C -0.132 4.132 22 C -0.157 4.157 23 C 0.513 3.487 24 O -0.528 6.528 25 C 0.044 3.956 26 H 0.260 0.740 27 H 0.342 0.658 28 H 0.026 0.974 29 H 0.061 0.939 30 H 0.026 0.974 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.067 0.933 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.272 -21.390 -3.862 22.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.613 4.613 8 H 0.072 0.928 9 C 0.180 3.820 10 H 0.073 0.927 11 O -0.355 6.355 12 C -0.094 4.094 13 N -0.247 5.247 14 C -0.075 4.075 15 C -0.148 4.148 16 C -0.170 4.170 17 C 0.061 3.939 18 H 0.114 0.886 19 N -0.350 5.350 20 C -0.022 4.022 21 C -0.169 4.169 22 C -0.197 4.197 23 C 0.301 3.699 24 O -0.404 6.404 25 C -0.085 4.085 26 H 0.070 0.930 27 H 0.185 0.815 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.085 0.915 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.357 -20.961 -3.206 21.469 hybrid contribution 1.634 0.936 0.208 1.894 sum 4.991 -20.025 -2.998 20.854 Atomic orbital electron populations 1.70078 1.05884 1.26348 1.47135 1.25011 0.94677 0.99020 0.93876 0.86685 0.79975 0.83590 0.78184 1.20530 1.21126 1.19897 1.21671 0.93161 0.91672 1.54764 0.92786 1.19322 0.87779 0.88421 0.86482 0.92713 1.86554 1.37711 1.96307 1.14944 1.23062 0.97254 0.89570 0.99528 1.61911 1.27022 1.01471 1.34342 1.22126 0.96825 0.98473 0.90082 1.21520 0.97824 0.93558 1.01938 1.21957 0.98624 0.98386 0.97991 1.21009 0.90139 0.83805 0.98901 0.88617 1.48464 1.34298 1.30593 1.21614 1.22132 0.97908 0.93323 0.88827 1.22624 0.96695 1.01805 0.95825 1.22349 1.02283 0.98385 0.96706 1.20885 0.80371 0.84821 0.83855 1.90727 1.68222 1.59016 1.22456 1.22346 0.94632 0.90449 1.01102 0.93031 0.81547 0.95565 0.92004 0.95606 0.89438 0.91551 0.90893 0.90870 0.92274 0.91105 0.90152 0.89922 0.89304 0.88276 0.88081 0.91460 0.93972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.64 12.84 55.43 0.71 -24.93 16 2 C 0.08 2.28 5.40 -17.82 -0.10 2.18 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.57 -16.05 8.76 -34.44 -0.30 -16.35 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.24 6.14 2.71 -27.88 -0.08 6.06 16 10 H 0.06 1.55 6.42 -51.93 -0.33 1.21 16 11 O -0.55 -14.53 12.60 -35.23 -0.44 -14.98 16 12 C 0.03 0.72 4.56 -3.82 -0.02 0.71 16 13 N -0.52 -9.95 4.53 -234.67 -1.06 -11.01 16 14 C 0.05 0.97 5.29 -3.83 -0.02 0.95 16 15 C -0.11 -1.63 6.09 -26.65 -0.16 -1.79 16 16 C -0.13 -1.82 5.32 -26.61 -0.14 -1.96 16 17 C 0.16 2.24 2.91 -67.85 -0.20 2.04 16 18 H 0.10 1.25 8.07 -51.93 -0.42 0.83 16 19 N -0.62 -7.11 2.83 -164.64 -0.47 -7.58 16 20 C 0.10 0.75 7.31 -3.03 -0.02 0.72 16 21 C -0.13 -0.74 7.19 -25.01 -0.18 -0.92 16 22 C -0.16 -1.25 6.86 -26.74 -0.18 -1.44 16 23 C 0.51 6.63 7.40 -10.86 -0.08 6.55 16 24 O -0.53 -9.17 15.07 5.56 0.08 -9.09 16 25 C 0.04 0.73 4.76 -3.83 -0.02 0.72 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.34 8.08 9.04 45.56 0.41 8.50 16 28 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 29 H 0.06 1.30 7.98 -51.93 -0.41 0.89 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 1.78 6.21 -51.93 -0.32 1.46 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.17 6.71 -51.93 -0.35 0.83 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 1.10 8.01 -51.93 -0.42 0.68 16 43 H 0.04 0.80 6.76 -51.93 -0.35 0.45 16 LS Contribution 338.09 15.07 5.09 5.09 Total: -1.00 -33.29 338.09 -8.98 -42.27 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.38 Total: 6.35 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -1.50 Total: -2.54 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -0.82 Total: -43.52 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.36 Total: -24.07 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.29 -8.98 -42.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929622013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.024 kcal (2) G-P(sol) polarization free energy of solvation -33.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds