Wall clock time and date at job start Tue Mar 31 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 120.00340 * 2 1 4 4 H 1.48508 * 109.47223 * 270.00598 * 3 2 1 5 5 H 1.48505 * 109.46984 * 29.99795 * 3 2 1 6 6 H 1.48499 * 109.47419 * 150.00248 * 3 2 1 7 7 C 1.37876 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99891 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00361 * 179.97438 * 7 2 1 10 10 H 1.09006 * 109.46962 * 299.99950 * 9 7 2 11 11 O 1.42898 * 109.47090 * 59.99635 * 9 7 2 12 12 C 1.52996 * 109.47305 * 179.97438 * 9 7 2 13 13 N 1.46904 * 109.46822 * 179.73465 * 12 9 7 14 14 C 1.46853 * 110.99721 * 169.82280 * 13 12 9 15 15 C 1.53039 * 109.51932 * 185.83867 * 14 13 12 16 16 C 1.53113 * 109.27962 * 300.81694 * 15 14 13 17 17 C 1.53124 * 109.15939 * 57.65734 * 16 15 14 18 18 H 1.09002 * 109.53315 * 62.30775 * 17 16 15 19 19 N 1.46500 * 109.50023 * 182.40421 * 17 16 15 20 20 C 1.46769 * 124.34938 * 239.80120 * 19 17 16 21 21 C 1.54479 * 105.47437 * 197.02001 * 20 19 17 22 22 C 1.54633 * 101.76275 * 334.58579 * 21 20 19 23 23 C 1.34422 * 124.35190 * 59.50702 * 19 17 16 24 24 O 1.21280 * 124.94067 * 359.56404 * 23 19 17 25 25 C 1.46845 * 111.00121 * 294.03016 * 13 12 9 26 26 H 0.96993 * 119.99588 * 359.97438 * 1 2 3 27 27 H 0.96700 * 114.00170 * 59.99972 * 11 9 7 28 28 H 1.08999 * 109.47523 * 59.73194 * 12 9 7 29 29 H 1.09004 * 109.46905 * 299.72779 * 12 9 7 30 30 H 1.09007 * 109.46145 * 305.84958 * 14 13 12 31 31 H 1.08995 * 109.46552 * 65.82384 * 14 13 12 32 32 H 1.08999 * 109.50311 * 60.76143 * 15 14 13 33 33 H 1.09008 * 109.50143 * 180.87665 * 15 14 13 34 34 H 1.08999 * 109.52482 * 297.75273 * 16 15 14 35 35 H 1.08998 * 109.52703 * 177.56217 * 16 15 14 36 36 H 1.09001 * 110.24251 * 316.01816 * 20 19 17 37 37 H 1.08992 * 110.24155 * 78.02041 * 20 19 17 38 38 H 1.09000 * 110.96925 * 92.70167 * 21 20 19 39 39 H 1.09000 * 110.96968 * 216.46712 * 21 20 19 40 40 H 1.09008 * 110.48576 * 143.47959 * 22 21 20 41 41 H 1.08999 * 110.48311 * 265.98210 * 22 21 20 42 42 H 1.08998 * 109.46478 * 54.14121 * 25 13 12 43 43 H 1.09005 * 109.45885 * 294.17850 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 1 3.8746 -0.6802 -0.8912 11 8 3.9884 -0.5208 1.1656 12 6 4.0215 -2.6367 -0.0010 13 7 5.4905 -2.6367 -0.0080 14 6 6.0178 -3.9857 0.2342 15 6 7.5414 -3.9233 0.3647 16 6 8.1359 -3.3462 -0.9228 17 6 7.5340 -1.9614 -1.1777 18 1 7.8012 -1.2918 -0.3602 19 7 8.0546 -1.4264 -2.4382 20 6 8.8150 -0.1766 -2.5561 21 6 8.7660 0.1959 -4.0546 22 6 8.5527 -1.1855 -4.7159 23 6 7.9022 -2.0199 -3.6347 24 8 7.3249 -3.0702 -3.8205 25 6 6.0108 -2.0806 -1.2635 26 1 -0.4849 0.8400 0.0004 27 1 3.7033 -0.9244 1.9968 28 1 3.6539 -3.1521 -0.8883 29 1 3.6624 -3.1489 0.8917 30 1 5.5904 -4.3829 1.1549 31 1 5.7511 -4.6350 -0.5996 32 1 7.8086 -3.2851 1.2070 33 1 7.9339 -4.9269 0.5289 34 1 7.9018 -4.0047 -1.7593 35 1 9.2174 -3.2596 -0.8179 36 1 8.3492 0.6062 -1.9575 37 1 9.8464 -0.3314 -2.2395 38 1 7.9289 0.8619 -4.2638 39 1 9.7071 0.6415 -4.3767 40 1 7.8952 -1.0969 -5.5809 41 1 9.5086 -1.6204 -5.0077 42 1 5.5781 -1.0943 -1.4308 43 1 5.7440 -2.7390 -2.0904 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929622014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:12 Heat of formation + Delta-G solvation = -77.413526 kcal Electronic energy + Delta-G solvation = -23602.744101 eV Core-core repulsion = 20261.719989 eV Total energy + Delta-G solvation = -3341.024112 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.67605 -38.46116 -36.39219 -35.94835 -33.47629 -32.19842 -32.00679 -28.97705 -28.46503 -27.65705 -25.34756 -23.27777 -22.86004 -22.08968 -20.32735 -19.92377 -18.84114 -17.38991 -16.72187 -16.53717 -15.59628 -15.12094 -14.71010 -14.66135 -14.39555 -14.13516 -13.89597 -13.77170 -13.58783 -13.30938 -13.07074 -12.88405 -12.75453 -12.53538 -12.13598 -11.74707 -11.53141 -11.42525 -11.27940 -11.09370 -10.91333 -10.73071 -10.58062 -10.47516 -10.24642 -9.79877 -9.60126 -8.98587 -8.69971 -8.59074 -8.20825 -7.73752 -6.10585 -4.21297 2.58142 2.91389 3.39586 3.48854 3.76533 4.20503 4.29753 4.39929 4.55748 4.61616 4.84374 4.91583 4.98834 5.09114 5.24622 5.26656 5.31936 5.34964 5.48617 5.50598 5.60337 5.67998 5.77663 5.77984 5.87674 5.90161 5.92870 6.02436 6.12489 6.17944 6.26694 6.31556 6.44689 6.61969 6.67950 7.14774 7.30862 7.42652 7.61433 7.72784 8.19164 8.32530 8.86745 9.14417 9.54617 11.00299 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016753 B = 0.005570 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.954592 B = 5025.587637 C = 5939.183855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.083 3.917 3 Si 0.871 3.129 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.215 1.215 7 C -0.565 4.565 8 H 0.071 0.929 9 C 0.203 3.797 10 H 0.050 0.950 11 O -0.571 6.571 12 C 0.042 3.958 13 N -0.526 5.526 14 C 0.051 3.949 15 C -0.109 4.109 16 C -0.132 4.132 17 C 0.164 3.836 18 H 0.096 0.904 19 N -0.615 5.615 20 C 0.101 3.899 21 C -0.133 4.133 22 C -0.157 4.157 23 C 0.514 3.486 24 O -0.529 6.529 25 C 0.045 3.955 26 H 0.264 0.736 27 H 0.354 0.646 28 H 0.032 0.968 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.308 -1.643 -4.213 21.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.121 4.121 3 Si 0.697 3.303 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.137 1.137 7 C -0.603 4.603 8 H 0.089 0.911 9 C 0.145 3.855 10 H 0.068 0.932 11 O -0.376 6.376 12 C -0.085 4.085 13 N -0.251 5.251 14 C -0.077 4.077 15 C -0.148 4.148 16 C -0.170 4.170 17 C 0.061 3.939 18 H 0.114 0.886 19 N -0.349 5.349 20 C -0.022 4.022 21 C -0.170 4.170 22 C -0.197 4.197 23 C 0.302 3.698 24 O -0.405 6.405 25 C -0.084 4.084 26 H 0.074 0.926 27 H 0.200 0.800 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 21.258 -1.443 -4.301 21.737 hybrid contribution -0.409 -0.015 -0.411 0.580 sum 20.849 -1.458 -4.712 21.425 Atomic orbital electron populations 1.69964 1.06779 1.27402 1.48998 1.24980 0.94598 0.99946 0.92552 0.87035 0.83206 0.81813 0.78246 1.21606 1.22270 1.13728 1.21533 0.89958 0.94816 1.53965 0.91097 1.19695 0.92996 0.86998 0.85851 0.93211 1.86642 1.77943 1.56943 1.16062 1.22815 0.84227 1.01062 1.00436 1.61911 1.09325 1.20555 1.33302 1.22112 0.94807 0.90325 1.00466 1.21508 0.95193 1.00647 0.97430 1.21955 0.99387 0.96607 0.99093 1.20993 0.93675 0.95256 0.83955 0.88597 1.48426 1.54833 1.24055 1.07609 1.22109 0.96276 0.86369 0.97463 1.22605 1.03772 0.96644 0.94019 1.22341 1.02938 0.95849 0.98553 1.20886 0.79178 0.85257 0.84476 1.90713 1.43037 1.22782 1.83995 1.22363 0.93253 1.01298 0.91527 0.92632 0.80009 0.94993 0.91050 0.90836 0.95315 0.91037 0.91591 0.90718 0.92193 0.90019 0.91168 0.89799 0.89267 0.88146 0.88139 0.90221 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.64 13.96 55.43 0.77 -26.86 16 2 C 0.08 2.43 5.47 -17.82 -0.10 2.34 16 3 Si 0.87 22.05 26.99 -169.99 -4.59 17.46 16 4 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.22 -5.30 5.31 56.52 0.30 -5.00 16 7 C -0.56 -15.94 9.34 -34.44 -0.32 -16.27 16 8 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 9 C 0.20 4.82 2.20 -27.88 -0.06 4.76 16 10 H 0.05 1.25 5.85 -51.93 -0.30 0.94 16 11 O -0.57 -13.12 10.01 -35.23 -0.35 -13.47 16 12 C 0.04 0.86 4.56 -3.82 -0.02 0.84 16 13 N -0.53 -9.35 4.53 -234.66 -1.06 -10.41 16 14 C 0.05 0.77 5.46 -3.83 -0.02 0.75 16 15 C -0.11 -1.36 6.09 -26.65 -0.16 -1.52 16 16 C -0.13 -1.73 5.31 -26.61 -0.14 -1.87 16 17 C 0.16 2.31 2.91 -67.85 -0.20 2.11 16 18 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 19 N -0.62 -7.72 2.83 -164.75 -0.47 -8.18 16 20 C 0.10 0.87 7.30 -3.12 -0.02 0.85 16 21 C -0.13 -0.93 7.18 -25.10 -0.18 -1.11 16 22 C -0.16 -1.42 6.86 -26.74 -0.18 -1.60 16 23 C 0.51 7.11 7.41 -10.86 -0.08 7.03 16 24 O -0.53 -9.49 15.07 5.56 0.08 -9.41 16 25 C 0.04 0.78 4.60 -3.84 -0.02 0.77 16 26 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 27 H 0.35 7.32 9.04 45.56 0.41 7.73 16 28 H 0.03 0.69 8.12 -51.93 -0.42 0.27 16 29 H 0.07 1.42 7.98 -51.93 -0.41 1.01 16 30 H 0.07 1.04 8.01 -51.93 -0.42 0.62 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 34 H 0.07 1.14 6.68 -51.93 -0.35 0.80 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 1.55 6.21 -51.93 -0.32 1.23 16 43 H 0.04 0.87 6.79 -51.93 -0.35 0.52 16 LS Contribution 332.07 15.07 5.00 5.00 Total: -1.00 -33.89 332.07 -8.58 -42.47 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.47 Total: 6.33 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -1.50 Total: -2.93 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -0.76 Total: -45.46 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.27 Total: -22.88 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.59 Total: 17.46 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.89 -8.58 -42.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929622014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.939 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds