Wall clock time and date at job start Tue Mar 31 2020 06:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99923 * 2 1 4 4 H 1.48492 * 109.47148 * 240.00168 * 3 2 1 5 5 H 1.48498 * 109.47295 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46848 * 120.00055 * 3 2 1 7 7 C 1.37875 * 119.99521 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99354 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00355 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47043 * 299.99853 * 9 7 2 11 11 O 1.42896 * 109.47216 * 60.00020 * 9 7 2 12 12 C 1.53002 * 109.46999 * 180.02562 * 9 7 2 13 13 N 1.46906 * 109.47053 * 179.97438 * 12 9 7 14 14 C 1.48539 * 110.99911 * 52.60113 * 13 12 9 15 15 C 1.54934 * 103.22340 * 159.72267 * 14 13 12 16 16 C 1.54597 * 102.92270 * 322.58191 * 15 14 13 17 17 H 1.08995 * 110.31419 * 263.04374 * 16 15 14 18 18 C 1.53000 * 110.30553 * 140.87435 * 16 15 14 19 19 N 1.46500 * 109.47045 * 69.28885 * 18 16 15 20 20 C 1.46762 * 124.35419 * 89.99984 * 19 18 16 21 21 C 1.54475 * 105.47599 * 197.01594 * 20 19 18 22 22 C 1.54632 * 101.76373 * 334.58397 * 21 20 19 23 23 C 1.34421 * 124.34798 * 269.69232 * 19 18 16 24 24 O 1.21288 * 124.93995 * 359.58485 * 23 19 18 25 25 C 1.47897 * 110.99785 * 169.99856 * 13 12 9 26 26 H 0.96999 * 120.00022 * 359.97438 * 1 2 3 27 27 H 0.96699 * 114.00604 * 60.00118 * 11 9 7 28 28 H 1.08992 * 109.47056 * 59.99641 * 12 9 7 29 29 H 1.09004 * 109.47006 * 299.99757 * 12 9 7 30 30 H 1.08998 * 110.66256 * 278.15595 * 14 13 12 31 31 H 1.08992 * 110.66782 * 41.28665 * 14 13 12 32 32 H 1.09000 * 110.72116 * 204.22504 * 15 14 13 33 33 H 1.08998 * 110.72349 * 80.94448 * 15 14 13 34 34 H 1.08997 * 109.47287 * 189.28393 * 18 16 15 35 35 H 1.08998 * 109.47647 * 309.28734 * 18 16 15 36 36 H 1.08999 * 110.24072 * 316.01867 * 20 19 18 37 37 H 1.08997 * 110.24901 * 78.00958 * 20 19 18 38 38 H 1.08998 * 110.96911 * 92.69793 * 21 20 19 39 39 H 1.08997 * 110.97226 * 216.42516 * 21 20 19 40 40 H 1.08996 * 110.48650 * 143.48099 * 22 21 20 41 41 H 1.09010 * 110.48377 * 265.98581 * 22 21 20 42 42 H 1.08997 * 109.92311 * 333.50472 * 25 13 12 43 43 H 1.08999 * 109.91892 * 94.80211 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6240 -2.5575 0.8881 11 8 0.4299 -2.5741 -1.1688 12 6 2.2452 -3.6621 -0.0015 13 7 1.5107 -4.9343 -0.0020 14 6 0.5156 -4.9740 -1.1041 15 6 0.2440 -6.4889 -1.2820 16 6 1.6371 -7.1191 -1.0535 17 1 2.1294 -7.3052 -2.0080 18 6 1.5075 -8.4202 -0.2590 19 7 0.8630 -9.4387 -1.0918 20 6 1.5838 -10.3700 -1.9676 21 6 0.5211 -10.9270 -2.9406 22 6 -0.7774 -10.7623 -2.1172 23 6 -0.4643 -9.6443 -1.1474 24 8 -1.2907 -9.0220 -0.5143 25 6 2.4234 -6.0731 -0.2416 26 1 -0.4850 0.8400 0.0004 27 1 0.9222 -2.5282 -1.9998 28 1 2.8712 -3.6047 0.8889 29 1 2.8726 -3.6039 -0.8910 30 1 -0.3966 -4.4506 -0.8177 31 1 0.9344 -4.5485 -2.0160 32 1 -0.1147 -6.7007 -2.2893 33 1 -0.4669 -6.8436 -0.5357 34 1 2.4981 -8.7659 0.0362 35 1 0.9040 -8.2437 0.6313 36 1 2.3615 -9.8427 -2.5200 37 1 2.0193 -11.1789 -1.3812 38 1 0.4809 -10.3350 -3.8549 39 1 0.7104 -11.9765 -3.1658 40 1 -1.6084 -10.4865 -2.7664 41 1 -1.0055 -11.6810 -1.5767 42 1 3.2924 -5.7397 -0.8086 43 1 2.7394 -6.5021 0.7093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931060650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:27 Heat of formation + Delta-G solvation = -76.896644 kcal Electronic energy + Delta-G solvation = -22893.340753 eV Core-core repulsion = 19552.339054 eV Total energy + Delta-G solvation = -3341.001698 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.57411 -38.66030 -36.49544 -35.70607 -33.45308 -32.10530 -31.06823 -28.95514 -27.85288 -27.75430 -25.44607 -23.93494 -22.21902 -21.21239 -20.11447 -20.01713 -19.39068 -16.99394 -16.96613 -16.72585 -15.60239 -15.10013 -14.91993 -14.58380 -14.11019 -14.02868 -13.94950 -13.80761 -13.49795 -13.22805 -13.03254 -12.74601 -12.60611 -11.93178 -11.76324 -11.60819 -11.54738 -11.36730 -11.19347 -10.91979 -10.84882 -10.77695 -10.66883 -10.35912 -10.21796 -9.90455 -9.78010 -8.95155 -8.76867 -8.54756 -7.95747 -7.71080 -5.97698 -4.16162 2.52027 2.88675 3.30163 3.35630 3.37101 4.13290 4.18590 4.38523 4.49076 4.69819 4.74215 4.88005 4.89033 5.08515 5.17746 5.23174 5.28805 5.37506 5.39386 5.49111 5.58805 5.64494 5.77969 5.84687 5.91501 6.04794 6.14097 6.21067 6.34654 6.38175 6.45534 6.46138 6.75421 6.83520 7.03181 7.05217 7.59577 7.64474 7.79185 7.97414 8.12009 8.23317 8.86641 9.38688 9.60150 11.06389 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043545 B = 0.003247 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.865933 B = 8622.016976 C = 8899.618326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.573 4.573 8 H 0.054 0.946 9 C 0.232 3.768 10 H 0.063 0.937 11 O -0.559 6.559 12 C 0.023 3.977 13 N -0.515 5.515 14 C 0.058 3.942 15 C -0.125 4.125 16 C -0.114 4.114 17 H 0.068 0.932 18 C 0.137 3.863 19 N -0.619 5.619 20 C 0.101 3.899 21 C -0.132 4.132 22 C -0.157 4.157 23 C 0.513 3.487 24 O -0.522 6.522 25 C 0.042 3.958 26 H 0.261 0.739 27 H 0.339 0.661 28 H 0.068 0.932 29 H 0.021 0.979 30 H 0.100 0.900 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.038 0.962 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.437 -23.050 -6.407 24.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.127 4.127 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.612 4.612 8 H 0.072 0.928 9 C 0.174 3.826 10 H 0.081 0.919 11 O -0.362 6.362 12 C -0.105 4.105 13 N -0.239 5.239 14 C -0.069 4.069 15 C -0.163 4.163 16 C -0.134 4.134 17 H 0.087 0.913 18 C 0.015 3.985 19 N -0.353 5.353 20 C -0.022 4.022 21 C -0.170 4.170 22 C -0.197 4.197 23 C 0.301 3.699 24 O -0.398 6.398 25 C -0.087 4.087 26 H 0.071 0.929 27 H 0.183 0.817 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.118 0.882 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.057 0.943 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.136 -22.630 -5.031 23.394 hybrid contribution 1.707 1.108 -1.226 2.376 sum 4.843 -21.522 -6.257 22.930 Atomic orbital electron populations 1.70074 1.05887 1.26505 1.46837 1.25029 0.94692 0.99059 0.93871 0.86728 0.79700 0.83244 0.78621 1.20257 1.21195 1.20159 1.21574 0.93051 0.91555 1.54982 0.92820 1.19368 0.88130 0.88837 0.86262 0.91898 1.86669 1.38563 1.95746 1.15234 1.23174 0.97464 0.90384 0.99438 1.64831 1.13093 1.02427 1.43586 1.23287 0.97768 0.93407 0.92456 1.22772 0.95714 0.96623 1.01230 1.22411 0.97894 0.94559 0.98528 0.91341 1.21550 0.97687 0.86017 0.93239 1.48314 1.07171 1.34925 1.44933 1.22055 0.95470 0.92615 0.92064 1.22586 0.93711 1.02507 0.98194 1.22337 0.99640 0.99164 0.98549 1.20872 0.82315 0.84088 0.82672 1.90761 1.50604 1.51578 1.46815 1.22846 0.94838 0.92401 0.98649 0.92936 0.81700 0.91404 0.96044 0.88208 0.94366 0.92689 0.89886 0.90670 0.89388 0.90446 0.91222 0.89982 0.89315 0.88122 0.88090 0.94340 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.73 12.84 55.43 0.71 -25.02 16 2 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.57 -15.95 8.76 -34.44 -0.30 -16.25 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.23 5.98 2.91 -27.88 -0.08 5.90 16 10 H 0.06 1.84 8.14 -51.93 -0.42 1.42 16 11 O -0.56 -14.23 9.00 -35.23 -0.32 -14.55 16 12 C 0.02 0.50 4.82 -3.82 -0.02 0.48 16 13 N -0.52 -9.92 5.40 -230.45 -1.24 -11.17 16 14 C 0.06 1.10 4.65 -1.90 -0.01 1.10 16 15 C -0.13 -2.02 5.82 -24.87 -0.14 -2.17 16 16 C -0.11 -1.51 3.23 -89.26 -0.29 -1.79 16 17 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 18 C 0.14 1.56 5.07 -4.04 -0.02 1.54 16 19 N -0.62 -6.40 2.87 -172.42 -0.50 -6.89 16 20 C 0.10 0.64 7.35 -3.13 -0.02 0.62 16 21 C -0.13 -0.68 7.18 -25.10 -0.18 -0.86 16 22 C -0.16 -1.18 6.86 -26.74 -0.18 -1.37 16 23 C 0.51 6.28 7.51 -10.86 -0.08 6.20 16 24 O -0.52 -8.84 15.89 5.55 0.09 -8.76 16 25 C 0.04 0.63 6.36 -2.75 -0.02 0.61 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.34 7.84 8.34 45.56 0.38 8.22 16 28 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.02 0.45 7.81 -51.93 -0.41 0.04 16 30 H 0.10 2.21 6.84 -51.93 -0.35 1.85 16 31 H 0.04 0.72 6.81 -51.93 -0.35 0.37 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.52 6.21 -51.93 -0.32 1.20 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.20 7.77 -51.93 -0.40 0.80 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.62 8.14 -51.92 -0.42 0.19 16 42 H 0.04 0.57 7.57 -51.93 -0.39 0.18 16 43 H 0.07 0.99 7.68 -51.93 -0.40 0.59 16 LS Contribution 337.40 15.07 5.08 5.08 Total: -1.00 -33.19 337.40 -9.08 -42.27 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -6.44 Total: 6.45 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -1.45 Total: -3.82 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: -1.03 Total: -43.08 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.23 Total: -23.31 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.19 -9.08 -42.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931060650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.627 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds