Wall clock time and date at job start Tue Mar 31 2020 05:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81399 * 103.00011 * 2 1 4 4 C 1.53008 * 109.47140 * 180.02562 * 3 2 1 5 5 C 1.53118 * 109.52098 * 184.99810 * 4 3 2 6 6 C 1.53039 * 109.27500 * 182.37716 * 5 4 3 7 7 N 1.46844 * 109.52461 * 59.18143 * 6 5 4 8 8 C 1.46900 * 110.99849 * 174.15852 * 7 6 5 9 9 C 1.53001 * 109.47173 * 294.09370 * 8 7 6 10 10 H 1.08989 * 109.47191 * 56.95273 * 9 8 7 11 11 C 1.47201 * 109.46949 * 296.94979 * 9 8 7 12 12 N 8.30036 * 125.16853 * 327.63135 * 2 1 3 13 13 C 1.53007 * 109.46997 * 176.95566 * 9 8 7 14 14 C 1.50694 * 109.47170 * 185.00091 * 13 9 8 15 15 H 1.08008 * 119.99746 * 359.97438 * 14 13 9 16 16 C 1.37877 * 120.00395 * 179.97438 * 14 13 9 17 17 N 1.31513 * 119.99346 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00278 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47375 * 89.99909 * 18 16 14 20 20 H 1.48501 * 109.47098 * 210.00218 * 18 16 14 21 21 H 1.48510 * 109.47311 * 330.00145 * 18 16 14 22 22 C 1.46843 * 111.19802 * 298.25602 * 7 6 5 23 23 C 1.53042 * 109.52195 * 61.74041 * 22 7 6 24 24 H 1.09002 * 109.47217 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47021 * 299.99710 * 1 2 3 26 26 H 1.09000 * 109.47510 * 59.99787 * 1 2 3 27 27 H 1.08997 * 109.47265 * 60.00284 * 3 2 1 28 28 H 1.09003 * 109.47318 * 299.99581 * 3 2 1 29 29 H 1.08997 * 109.52234 * 305.12352 * 4 3 2 30 30 H 1.08997 * 109.50326 * 62.43910 * 5 4 3 31 31 H 1.09002 * 109.53959 * 302.33981 * 5 4 3 32 32 H 1.09004 * 109.46101 * 299.16078 * 6 5 4 33 33 H 1.09006 * 109.45410 * 179.19366 * 6 5 4 34 34 H 1.08997 * 109.47237 * 54.09476 * 8 7 6 35 35 H 1.09007 * 109.47014 * 174.09507 * 8 7 6 36 36 H 1.08996 * 109.46548 * 304.99748 * 13 9 8 37 37 H 1.08994 * 109.47042 * 64.99438 * 13 9 8 38 38 H 0.97007 * 119.99876 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.46644 * 181.75647 * 22 7 6 40 40 H 1.09000 * 109.46674 * 301.72600 * 22 7 6 41 41 H 1.08999 * 109.50419 * 180.87565 * 23 22 7 42 42 H 1.09002 * 109.53336 * 60.78180 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.0887 3.4261 0.1251 6 6 5.6083 3.5976 0.0642 7 7 6.1116 3.0652 -1.2084 8 6 7.5470 3.3374 -1.3619 9 6 7.7701 4.8463 -1.4814 10 1 7.3522 5.3457 -0.6074 11 6 7.1060 5.3458 -2.6964 12 7 6.5948 5.7309 -3.6326 13 6 9.2704 5.1350 -1.5650 14 6 9.4963 6.6249 -1.5589 15 1 8.6541 7.2986 -1.5016 16 6 10.7782 7.1281 -1.6265 17 7 11.8037 6.3077 -1.6957 18 14 11.0582 8.9749 -1.6196 19 1 11.2129 9.4470 -0.2202 20 1 12.2889 9.2918 -2.3879 21 1 9.8953 9.6543 -2.2454 22 6 5.8323 1.6288 -1.3307 23 6 4.3194 1.3986 -1.3115 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8031 2.2371 0.8900 28 1 1.8031 2.2371 -0.8900 29 1 4.1712 1.3936 0.8394 30 1 3.7174 3.8071 1.0764 31 1 3.6271 3.9786 -0.6933 32 1 6.0682 3.0569 0.8914 33 1 5.8575 4.6561 0.1391 34 1 8.0837 2.9585 -0.4922 35 1 7.9164 2.8432 -2.2606 36 1 9.7746 4.6875 -0.7085 37 1 9.6713 4.7104 -2.4853 38 1 12.7056 6.6617 -1.7437 39 1 6.2443 1.2573 -2.2690 40 1 6.2911 1.0973 -0.4971 41 1 4.1128 0.3310 -1.3866 42 1 3.8610 1.9180 -2.1530 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932594819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:34 Heat of formation + Delta-G solvation = 2.038334 kcal Electronic energy + Delta-G solvation = -19791.442129 eV Core-core repulsion = 16896.616179 eV Total energy + Delta-G solvation = -2894.825950 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.33106 -36.63615 -34.67598 -33.42196 -31.62207 -30.83592 -29.42233 -28.42420 -26.16197 -23.63075 -23.09607 -21.77421 -21.43643 -19.76708 -16.72635 -16.60394 -16.34235 -15.79564 -14.98454 -14.83516 -14.54544 -14.50564 -14.34613 -13.94993 -13.73597 -13.38028 -13.22426 -12.85880 -12.49065 -12.41208 -12.11751 -12.05256 -11.87436 -11.48958 -11.24406 -11.19394 -11.06634 -10.85714 -10.78906 -10.59568 -10.51953 -10.40004 -10.19432 -9.95639 -9.51645 -9.20527 -8.45246 -8.14471 -7.94609 -6.09157 -4.12181 1.38807 2.31106 3.29195 3.36249 3.40967 3.77631 3.87764 4.02286 4.41547 4.46196 4.52493 4.75427 4.77880 4.80656 4.94714 5.06431 5.19888 5.25683 5.28968 5.31085 5.34867 5.40132 5.56300 5.58843 5.62810 5.75587 5.77637 5.88408 5.99954 6.05769 6.06644 6.10698 6.33095 6.40833 6.53037 7.22471 7.25228 7.43732 7.54208 7.86166 8.23996 8.62506 8.92590 9.53192 11.01771 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.041097 B = 0.002927 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.144076 B = 9562.749001 C = 9669.533246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.265 6.265 3 C -0.076 4.076 4 C -0.072 4.072 5 C -0.107 4.107 6 C 0.052 3.948 7 N -0.541 5.541 8 C 0.063 3.937 9 C 0.010 3.990 10 H 0.099 0.901 11 C 0.258 3.742 12 N -0.481 5.481 13 C 0.031 3.969 14 C -0.525 4.525 15 H 0.056 0.944 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.057 3.943 23 C -0.111 4.111 24 H 0.099 0.901 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.026 0.974 38 H 0.262 0.738 39 H 0.075 0.925 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.315 -12.835 6.982 23.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.039 6.039 3 C -0.225 4.225 4 C -0.091 4.091 5 C -0.146 4.146 6 C -0.076 4.076 7 N -0.266 5.266 8 C -0.066 4.066 9 C -0.012 4.012 10 H 0.117 0.883 11 C -0.059 4.059 12 N -0.157 5.157 13 C -0.007 4.007 14 C -0.563 4.563 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.070 4.070 23 C -0.149 4.149 24 H 0.117 0.883 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.051 0.949 41 H 0.092 0.908 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.499 -12.911 5.174 23.145 hybrid contribution 0.011 1.531 1.018 1.838 sum -18.487 -11.381 6.192 22.575 Atomic orbital electron populations 1.23376 0.94759 1.06346 1.04783 1.86923 1.06772 1.12192 1.98011 1.23532 1.00455 0.93626 1.04858 1.21003 0.91396 0.97349 0.99372 1.21634 0.96163 0.94707 1.02119 1.22141 0.94398 1.01124 0.89972 1.61961 1.16263 1.14544 1.33855 1.22219 0.86726 0.95700 1.01932 1.19254 0.99243 0.93072 0.89656 0.88333 1.28739 0.91233 0.91799 0.94117 1.80889 1.12147 1.10456 1.12254 1.19169 0.85257 0.97553 0.98764 1.21138 0.92406 0.91487 1.51319 0.92536 1.24954 0.96152 0.97959 0.94933 1.69941 0.98656 1.34423 1.50013 0.86596 0.77810 0.85600 0.78108 1.20489 1.21146 1.19855 1.22044 0.95888 0.88122 1.00996 1.21685 0.95092 1.01062 0.97026 0.88251 0.90683 0.90575 0.90174 0.89985 0.90537 0.91500 0.90911 0.94601 0.89785 0.92914 0.90201 0.94496 0.95568 0.92807 0.90658 0.94881 0.90837 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 10.76 101.05 1.09 0.31 16 2 S -0.27 -2.40 21.26 -107.50 -2.29 -4.69 16 3 C -0.08 -0.64 5.39 37.16 0.20 -0.44 16 4 C -0.07 -0.67 2.25 -90.50 -0.20 -0.88 16 5 C -0.11 -1.07 5.38 -26.65 -0.14 -1.21 16 6 C 0.05 0.61 5.29 -3.83 -0.02 0.59 16 7 N -0.54 -7.27 4.30 -234.67 -1.01 -8.28 16 8 C 0.06 0.94 4.34 -3.82 -0.02 0.92 16 9 C 0.01 0.18 2.11 -93.40 -0.20 -0.02 16 10 H 0.10 1.70 6.30 -51.94 -0.33 1.38 16 11 C 0.26 5.43 13.61 -20.82 -0.28 5.14 16 12 N -0.48 -10.99 18.52 42.08 0.78 -10.21 16 13 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 14 C -0.53 -13.99 8.60 -34.44 -0.30 -14.29 16 15 H 0.06 1.50 7.59 -52.48 -0.40 1.10 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.55 13.29 55.43 0.74 -24.82 16 18 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 22 C 0.06 0.66 5.46 -3.83 -0.02 0.64 16 23 C -0.11 -1.15 5.17 -26.65 -0.14 -1.29 16 24 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 25 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 26 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 1.05 6.16 -51.93 -0.32 0.73 16 34 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 35 H 0.08 1.21 7.99 -51.93 -0.41 0.80 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.07 0.88 8.01 -51.93 -0.42 0.46 16 40 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.75 7.25 -51.93 -0.38 0.37 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 352.05 15.07 5.31 5.31 Total: -1.00 -29.96 352.05 -9.05 -39.01 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -7.31 Total: -4.32 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -0.25 Total: -8.31 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.51 Total: -43.30 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -2.40 SS G_CDS: -2.29 Total: -4.69 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.96 -9.05 -39.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932594819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.049 kcal (2) G-P(sol) polarization free energy of solvation -29.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds