Wall clock time and date at job start Tue Mar 31 2020 05:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47141 * 2 1 4 4 N 1.46495 * 109.47442 * 120.00253 * 2 1 3 5 5 N 1.28946 * 126.47468 * 300.02862 * 4 2 1 6 6 N 1.28574 * 109.62190 * 179.97438 * 5 4 2 7 7 C 1.33352 * 109.89648 * 359.97438 * 6 5 4 8 8 N 1.39915 * 126.25341 * 180.02562 * 7 6 5 9 9 C 1.34776 * 120.00088 * 0.30083 * 8 7 6 10 10 O 1.21586 * 119.99754 * 359.72174 * 9 8 7 11 11 N 1.34772 * 120.00323 * 179.72413 * 9 8 7 12 12 C 1.46498 * 119.99690 * 359.97438 * 11 9 8 13 13 C 1.46499 * 120.00202 * 179.97438 * 11 9 8 14 14 H 1.08997 * 109.47130 * 0.02562 * 13 11 9 15 15 C 1.53000 * 109.47124 * 240.00010 * 13 11 9 16 16 C 1.50703 * 109.46817 * 119.99796 * 13 11 9 17 17 H 1.08006 * 120.00249 * 35.01287 * 16 13 11 18 18 C 1.37878 * 119.99918 * 214.99955 * 16 13 11 19 19 N 1.31518 * 119.99849 * 184.91479 * 18 16 13 20 20 Si 1.86797 * 119.99897 * 4.92602 * 18 16 13 21 21 H 1.48503 * 109.47308 * 84.83060 * 20 18 16 22 22 H 1.48506 * 109.46976 * 204.82606 * 20 18 16 23 23 H 1.48492 * 109.47244 * 324.82925 * 20 18 16 24 24 N 1.31648 * 107.49739 * 0.26320 * 7 6 5 25 25 H 1.08997 * 109.47179 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46761 * 299.99681 * 1 2 3 27 27 H 1.09003 * 109.47099 * 59.99363 * 1 2 3 28 28 H 1.08999 * 109.46685 * 240.00459 * 2 1 3 29 29 H 1.09000 * 109.47111 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47626 * 300.00284 * 3 2 1 31 31 H 1.09008 * 109.47033 * 60.00485 * 3 2 1 32 32 H 0.97005 * 120.00056 * 180.02562 * 8 7 6 33 33 H 1.08997 * 109.47500 * 90.00400 * 12 11 9 34 34 H 1.09006 * 109.47265 * 210.00045 * 12 11 9 35 35 H 1.08997 * 109.47488 * 329.99933 * 12 11 9 36 36 H 1.09008 * 109.46760 * 174.98009 * 15 13 11 37 37 H 1.08996 * 109.47061 * 294.97565 * 15 13 11 38 38 H 1.08994 * 109.46792 * 54.98262 * 15 13 11 39 39 H 0.97001 * 120.00211 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.7848 -0.3611 2.4206 6 7 2.3704 -1.1899 3.2101 7 6 3.0215 -2.1111 2.4990 8 7 3.7723 -3.1744 3.0123 9 6 3.8815 -3.3406 4.3453 10 8 3.3317 -2.5635 5.1018 11 7 4.6000 -4.3680 4.8397 12 6 5.2620 -5.3045 3.9282 13 6 4.7191 -4.5483 6.2887 14 1 4.1638 -3.7617 6.7996 15 6 6.1933 -4.4770 6.6920 16 6 4.1568 -5.8918 6.6756 17 1 4.2721 -6.7367 6.0127 18 6 3.4953 -6.0426 7.8759 19 7 3.0895 -7.2338 8.2580 20 14 3.1753 -4.5549 8.9592 21 1 1.9294 -3.8788 8.5164 22 1 3.0259 -4.9930 10.3703 23 1 4.3159 -3.6102 8.8523 24 7 2.8332 -1.8345 1.2258 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 4.2109 -3.7943 2.4087 33 1 6.2673 -4.9465 3.7064 34 1 5.3213 -6.2869 4.3966 35 1 4.6899 -5.3770 3.0033 36 1 6.2754 -4.5217 7.7781 37 1 6.7313 -5.3167 6.2522 38 1 6.6232 -3.5419 6.3334 39 1 2.6238 -7.3399 9.1022 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933462613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:49 Heat of formation + Delta-G solvation = 119.904513 kcal Electronic energy + Delta-G solvation = -22394.142744 eV Core-core repulsion = 18990.427392 eV Total energy + Delta-G solvation = -3403.715352 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.155 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.98310 -39.78733 -36.79459 -35.67660 -34.67366 -32.71097 -32.18262 -31.09924 -29.82320 -27.79412 -26.34304 -25.27376 -24.89565 -23.34818 -21.84034 -20.60532 -19.03926 -18.04091 -17.49489 -17.05236 -16.69269 -16.39350 -15.29109 -14.96354 -14.77813 -14.13511 -13.78711 -13.68739 -13.27386 -12.99137 -12.89666 -12.70935 -12.43389 -12.34606 -12.21183 -11.99648 -11.91039 -11.45501 -11.38138 -11.26399 -11.02560 -10.71123 -10.56096 -10.43823 -10.32226 -9.76657 -9.53724 -9.23581 -8.91582 -8.59991 -7.72880 -6.17283 -4.20076 1.10476 1.57721 2.48044 2.68743 3.35978 3.42733 3.51629 3.79519 3.98503 4.10905 4.34825 4.40733 4.52244 4.66616 4.97423 5.04267 5.05777 5.23368 5.24459 5.32016 5.51217 5.53822 5.67299 5.80043 5.85903 6.14309 6.29655 6.30707 6.39869 6.50915 6.57663 6.76666 6.92322 7.25286 7.48100 7.60962 8.16619 8.44467 8.58084 8.83373 9.03076 9.45065 10.94164 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.028186 B = 0.003991 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.158784 B = 7014.723558 C = 7396.583015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.164 3.836 3 C -0.165 4.165 4 N -0.205 5.205 5 N 0.006 4.994 6 N -0.279 5.279 7 C 0.450 3.550 8 N -0.636 5.636 9 C 0.695 3.305 10 O -0.543 6.543 11 N -0.595 5.595 12 C 0.079 3.921 13 C 0.238 3.762 14 H 0.067 0.933 15 C -0.146 4.146 16 C -0.527 4.527 17 H 0.079 0.921 18 C 0.081 3.919 19 N -0.890 5.890 20 Si 0.874 3.126 21 H -0.269 1.269 22 H -0.288 1.288 23 H -0.262 1.262 24 N -0.344 5.344 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.118 0.882 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.419 0.581 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.027 0.973 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.095 12.321 -18.892 22.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.062 3.938 3 C -0.224 4.224 4 N -0.120 5.120 5 N 0.011 4.989 6 N -0.159 5.159 7 C 0.077 3.923 8 N -0.296 5.296 9 C 0.395 3.605 10 O -0.414 6.414 11 N -0.330 5.330 12 C -0.065 4.065 13 C 0.137 3.863 14 H 0.085 0.915 15 C -0.205 4.205 16 C -0.565 4.565 17 H 0.097 0.903 18 C -0.123 4.123 19 N -0.527 5.527 20 Si 0.701 3.299 21 H -0.194 1.194 22 H -0.214 1.214 23 H -0.187 1.187 24 N -0.194 5.194 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.136 0.864 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.258 0.742 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.678 13.178 -18.108 22.406 hybrid contribution 0.312 -0.310 0.063 0.445 sum -0.365 12.867 -18.046 22.167 Atomic orbital electron populations 1.22241 0.91965 1.03882 1.04376 1.21658 0.95727 0.93248 0.83121 1.22237 1.02433 0.93362 1.04378 1.53490 1.33559 1.18299 1.06683 1.78426 1.13705 1.18168 0.88628 1.75815 1.12879 1.03217 1.24007 1.21289 0.93351 0.90892 0.86733 1.42134 1.52359 1.27143 1.07950 1.15970 0.81179 0.83155 0.80147 1.91019 1.49658 1.45371 1.55400 1.47768 1.50986 1.25328 1.08938 1.21645 0.95887 0.96094 0.92848 1.19323 0.93719 0.98625 0.74605 0.91472 1.22216 0.98236 0.98924 1.01144 1.21119 1.36523 0.94037 1.04798 0.90293 1.24952 0.94045 0.95856 0.97470 1.69885 1.38236 1.22102 1.22435 0.86894 0.80437 0.83264 0.79314 1.19392 1.21396 1.18674 1.78779 1.19168 1.05256 1.16227 0.91422 0.90552 0.89428 0.86395 0.91499 0.89441 0.90563 0.74154 0.93467 0.89184 0.93172 0.92378 0.93086 0.95382 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 9.41 37.16 0.35 -0.72 16 2 C 0.16 1.30 3.97 -67.93 -0.27 1.03 16 3 C -0.17 -1.02 9.41 37.16 0.35 -0.67 16 4 N -0.21 -2.76 4.06 -4.89 -0.02 -2.78 16 5 N 0.01 0.10 12.99 60.35 0.78 0.88 16 6 N -0.28 -5.64 10.55 30.07 0.32 -5.32 16 7 C 0.45 8.18 8.97 -320.54 -2.88 5.30 16 8 N -0.64 -11.09 5.31 -17.17 -0.09 -11.18 16 9 C 0.70 15.02 8.25 -86.92 -0.72 14.30 16 10 O -0.54 -14.04 14.39 5.29 0.08 -13.96 16 11 N -0.59 -12.37 2.75 -181.01 -0.50 -12.87 16 12 C 0.08 1.24 9.35 59.85 0.56 1.80 16 13 C 0.24 5.70 2.30 -69.08 -0.16 5.54 16 14 H 0.07 1.79 4.05 -51.93 -0.21 1.58 16 15 C -0.15 -3.04 9.10 37.16 0.34 -2.70 16 16 C -0.53 -14.32 8.72 -34.44 -0.30 -14.62 16 17 H 0.08 2.24 6.82 -52.48 -0.36 1.88 16 18 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 19 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 20 Si 0.87 22.40 26.99 -169.99 -4.59 17.81 16 21 H -0.27 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.26 -6.47 6.82 56.52 0.39 -6.08 16 24 N -0.34 -5.28 12.79 30.08 0.38 -4.90 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 27 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.42 5.69 6.55 -40.82 -0.27 5.42 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.52 6.56 -51.93 -0.34 1.18 16 35 H 0.05 0.63 6.36 -51.93 -0.33 0.30 16 36 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 37 H 0.05 0.97 7.84 -51.93 -0.41 0.57 16 38 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 327.68 15.07 4.94 4.94 Total: -1.00 -35.66 327.68 -6.04 -41.69 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.29 Total: 0.09 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: -2.82 Total: 11.47 kcal Atomic # 7 Polarization: -63.69 SS G_CDS: 1.65 Total: -62.04 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.08 Total: -13.96 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.59 Total: 17.81 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.66 -6.04 -41.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933462613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.598 kcal (2) G-P(sol) polarization free energy of solvation -35.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds