Wall clock time and date at job start Tue Mar 31 2020 06:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00151 * 2 1 4 4 H 1.48496 * 109.46847 * 239.99822 * 3 2 1 5 5 H 1.48500 * 109.46849 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47164 * 119.99416 * 3 2 1 7 7 C 1.38813 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99825 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00317 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00228 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.77948 * 31.75918 * 10 9 7 12 12 C 1.55159 * 110.71827 * 268.51839 * 10 9 7 13 13 C 1.54909 * 101.57990 * 206.13106 * 12 10 9 14 14 N 1.47743 * 104.83995 * 37.09908 * 13 12 10 15 15 C 1.34780 * 125.81887 * 155.82587 * 14 13 12 16 16 O 1.21289 * 119.99816 * 179.90533 * 15 14 13 17 17 C 1.50697 * 120.00483 * 359.90665 * 15 14 13 18 18 C 1.52999 * 109.47301 * 179.97438 * 17 15 14 19 19 C 1.52996 * 109.46925 * 179.97438 * 18 17 15 20 20 H 1.08997 * 110.27614 * 55.64245 * 19 18 17 21 21 C 1.54944 * 110.30988 * 177.83417 * 19 18 17 22 22 C 1.55303 * 100.94366 * 155.36255 * 21 19 18 23 23 C 1.54378 * 102.25170 * 325.86758 * 22 21 19 24 24 O 1.43232 * 107.59105 * 21.35821 * 23 22 21 25 25 C 1.47020 * 108.53125 * 335.74644 * 14 13 12 26 26 H 0.96993 * 119.99872 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99984 * 359.97438 * 9 7 2 28 28 H 1.08994 * 111.00854 * 324.21153 * 12 10 9 29 29 H 1.09001 * 110.99961 * 88.02281 * 12 10 9 30 30 H 1.09003 * 110.36363 * 155.85234 * 13 12 10 31 31 H 1.09001 * 110.36855 * 278.17084 * 13 12 10 32 32 H 1.09004 * 109.46826 * 300.00015 * 17 15 14 33 33 H 1.08999 * 109.47133 * 59.99882 * 17 15 14 34 34 H 1.08994 * 109.47362 * 299.99868 * 18 17 15 35 35 H 1.09003 * 109.46782 * 60.00422 * 18 17 15 36 36 H 1.08999 * 111.12736 * 273.28314 * 21 19 18 37 37 H 1.09004 * 111.12752 * 37.44385 * 21 19 18 38 38 H 1.09010 * 110.84845 * 207.67983 * 22 21 19 39 39 H 1.08999 * 110.85345 * 84.06184 * 22 21 19 40 40 H 1.08999 * 109.83144 * 261.84496 * 23 22 21 41 41 H 1.08995 * 109.90580 * 140.91473 * 23 22 21 42 42 H 1.09002 * 109.88367 * 241.68734 * 25 14 13 43 43 H 1.09000 * 109.88319 * 120.67352 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 3.0014 -3.5582 0.5388 12 6 2.3012 -4.1516 -1.4487 13 6 2.4188 -5.6820 -1.2395 14 7 1.4332 -5.9966 -0.1849 15 6 0.8483 -7.1941 0.0163 16 8 0.0512 -7.3357 0.9194 17 6 1.1847 -8.3572 -0.8810 18 6 0.3903 -9.5882 -0.4397 19 6 0.7314 -10.7688 -1.3511 20 1 1.8070 -10.9446 -1.3548 21 6 -0.0220 -12.0410 -0.8877 22 6 -0.0744 -12.8512 -2.2116 23 6 -0.2132 -11.7377 -3.2719 24 8 0.2622 -10.5203 -2.6858 25 6 1.1977 -4.7834 0.6116 26 1 -0.4849 0.8400 -0.0004 27 1 0.3556 -2.3881 0.0005 28 1 1.4549 -3.9089 -2.0913 29 1 3.2262 -3.7396 -1.8521 30 1 2.1697 -6.2108 -2.1596 31 1 3.4246 -5.9438 -0.9109 32 1 0.9274 -8.1082 -1.9105 33 1 2.2515 -8.5708 -0.8145 34 1 0.6479 -9.8371 0.5897 35 1 -0.6766 -9.3749 -0.5060 36 1 0.5418 -12.5747 -0.1226 37 1 -1.0247 -11.7977 -0.5361 38 1 -0.9409 -13.5124 -2.2278 39 1 0.8473 -13.4142 -2.3587 40 1 -1.2594 -11.6270 -3.5571 41 1 0.3850 -11.9840 -4.1492 42 1 1.4928 -4.9563 1.6465 43 1 0.1435 -4.5099 0.5676 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967289136.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:30 Heat of formation + Delta-G solvation = -78.728572 kcal Electronic energy + Delta-G solvation = -21979.674367 eV Core-core repulsion = 18638.593230 eV Total energy + Delta-G solvation = -3341.081137 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.00306 -39.44782 -37.29348 -34.09582 -33.67005 -32.40268 -31.48949 -29.53280 -29.09028 -27.49989 -24.71572 -23.37159 -22.60955 -21.92171 -21.08195 -20.00602 -18.86771 -17.40658 -17.22105 -16.95705 -15.99709 -15.95384 -15.19021 -15.01691 -14.73023 -14.17530 -13.86758 -13.51743 -13.37700 -13.21981 -13.17085 -12.47337 -12.44285 -12.12625 -12.01385 -11.74327 -11.69361 -11.59687 -11.17742 -11.16212 -11.13182 -10.97886 -10.82416 -10.70118 -10.30707 -10.10469 -9.76275 -9.75697 -9.56222 -8.95914 -8.34275 -7.04071 -5.81319 -3.12063 2.86777 3.21786 3.41904 3.46442 3.47619 3.52707 4.15339 4.36546 4.54047 4.55251 4.68222 4.79101 4.86957 5.06192 5.10634 5.11305 5.26794 5.32721 5.37695 5.39926 5.41224 5.49335 5.55981 5.57898 5.61145 5.66148 5.75153 5.81281 5.95938 6.01401 6.12606 6.16306 6.30029 6.41241 6.61084 6.64360 6.78337 6.91932 7.64926 7.80753 8.35715 8.40594 9.47286 10.01963 10.36688 11.40847 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.045424 B = 0.002641 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.269948 B =10601.116410 C =10750.978701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.066 0.934 12 C -0.156 4.156 13 C 0.099 3.901 14 N -0.614 5.614 15 C 0.524 3.476 16 O -0.550 6.550 17 C -0.132 4.132 18 C -0.101 4.101 19 C 0.080 3.920 20 H 0.072 0.928 21 C -0.152 4.152 22 C -0.157 4.157 23 C 0.050 3.950 24 O -0.379 6.379 25 C 0.099 3.901 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.663 -25.078 -5.238 25.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.084 0.916 12 C -0.197 4.197 13 C -0.024 4.024 14 N -0.349 5.349 15 C 0.312 3.688 16 O -0.429 6.429 17 C -0.171 4.171 18 C -0.139 4.139 19 C 0.022 3.978 20 H 0.089 0.911 21 C -0.190 4.190 22 C -0.195 4.195 23 C -0.026 4.026 24 O -0.298 6.298 25 C -0.025 4.025 26 H 0.067 0.933 27 H 0.221 0.779 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.299 -24.842 -4.823 25.520 hybrid contribution 0.199 0.725 -0.074 0.755 sum 3.498 -24.118 -4.896 24.857 Atomic orbital electron populations 1.69657 1.05172 1.26007 1.56942 1.24784 0.95531 0.97837 1.02555 0.86235 0.78508 0.83346 0.77870 1.21183 1.21668 1.21173 1.19181 0.91017 0.83849 1.43628 0.91002 1.42365 1.05824 0.99390 1.87978 1.21183 0.94548 0.85715 0.92551 0.91582 1.23567 1.02750 0.91791 1.01579 1.22451 0.91757 0.97939 0.90302 1.48604 1.43217 1.09983 1.33053 1.20361 0.80421 0.82858 0.85112 1.90686 1.35065 1.83508 1.33626 1.21578 1.01813 0.93271 1.00482 1.21494 1.01678 0.92258 0.98489 1.23062 0.97783 0.94406 0.82504 0.91058 1.23308 1.02086 0.95874 0.97733 1.23123 1.03063 0.98416 0.94866 1.23093 0.99546 0.84040 0.95963 1.88443 1.82414 1.30937 1.28033 1.22326 1.01320 0.84134 0.94711 0.93291 0.77930 0.90673 0.90547 0.91206 0.91643 0.88377 0.89296 0.89921 0.90360 0.89831 0.89996 0.90077 0.90597 0.91408 0.91554 0.91829 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.25 -6.67 9.96 -15.06 -0.15 -6.82 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -17.68 5.22 -51.65 -0.27 -17.95 16 10 C 0.17 3.34 3.61 -66.09 -0.24 3.10 16 11 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 12 C -0.16 -2.56 6.77 -24.58 -0.17 -2.72 16 13 C 0.10 1.31 6.71 -2.35 -0.02 1.29 16 14 N -0.61 -9.82 3.34 -170.26 -0.57 -10.39 16 15 C 0.52 8.34 7.85 -10.99 -0.09 8.25 16 16 O -0.55 -10.73 16.31 5.55 0.09 -10.64 16 17 C -0.13 -1.52 4.63 -27.88 -0.13 -1.65 16 18 C -0.10 -1.09 4.25 -26.73 -0.11 -1.21 16 19 C 0.08 0.71 3.43 -25.71 -0.09 0.62 16 20 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 21 C -0.15 -1.07 6.57 -24.48 -0.16 -1.23 16 22 C -0.16 -0.94 7.02 -24.79 -0.17 -1.12 16 23 C 0.05 0.39 7.79 37.88 0.30 0.68 16 24 O -0.38 -4.03 10.69 -35.23 -0.38 -4.41 16 25 C 0.10 1.82 6.61 -3.06 -0.02 1.80 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.39 10.30 7.56 -40.82 -0.31 9.99 16 28 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.07 0.79 7.50 -51.93 -0.39 0.40 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 1.13 7.63 -51.93 -0.40 0.73 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 35 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 38 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.07 1.42 7.71 -51.93 -0.40 1.02 16 LS Contribution 348.64 15.07 5.25 5.25 Total: -1.00 -32.32 348.64 -8.68 -41.00 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -7.37 Total: 6.71 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -1.14 Total: 0.60 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: -0.11 Total: -55.57 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.29 Total: -15.05 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.32 -8.68 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967289136.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.724 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds