Wall clock time and date at job start Tue Mar 31 2020 06:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00215 * 2 1 4 4 H 1.48494 * 109.47532 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46804 * 300.00289 * 3 2 1 6 6 H 1.48505 * 109.47083 * 59.99474 * 3 2 1 7 7 C 1.38817 * 120.00471 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00408 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99751 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99900 * 179.97438 * 9 7 2 11 11 H 1.08994 * 110.88700 * 37.42607 * 10 9 7 12 12 C 1.55158 * 111.00386 * 273.54380 * 10 9 7 13 13 C 1.54325 * 102.94024 * 206.39118 * 12 10 9 14 14 N 1.47019 * 107.27653 * 22.19010 * 13 12 10 15 15 C 1.34774 * 125.65033 * 181.02479 * 14 13 12 16 16 O 1.21275 * 119.99844 * 180.02562 * 15 14 13 17 17 C 1.50699 * 120.00074 * 0.02739 * 15 14 13 18 18 C 1.52999 * 109.47041 * 180.02562 * 17 15 14 19 19 H 1.08995 * 109.48805 * 305.02803 * 18 17 15 20 20 C 1.53095 * 109.47989 * 185.00053 * 18 17 15 21 21 C 1.53176 * 109.16286 * 182.40803 * 20 18 17 22 22 C 1.53181 * 109.03560 * 56.98068 * 21 20 18 23 23 C 1.53095 * 109.15940 * 303.01673 * 22 21 20 24 24 O 1.42895 * 109.41568 * 57.61417 * 23 22 21 25 25 C 1.47429 * 108.69892 * 1.28950 * 14 13 12 26 26 H 0.96997 * 120.00199 * 359.97438 * 1 2 3 27 27 H 0.97002 * 119.99908 * 359.97438 * 9 7 2 28 28 H 1.08995 * 110.71754 * 88.02424 * 12 10 9 29 29 H 1.08999 * 110.71744 * 324.74890 * 12 10 9 30 30 H 1.09010 * 109.87851 * 262.77429 * 13 12 10 31 31 H 1.09000 * 109.88399 * 141.61339 * 13 12 10 32 32 H 1.09000 * 109.46930 * 59.99828 * 17 15 14 33 33 H 1.09003 * 109.46926 * 299.99824 * 17 15 14 34 34 H 1.09001 * 109.52293 * 62.49555 * 20 18 17 35 35 H 1.09007 * 109.52035 * 302.31323 * 20 18 17 36 36 H 1.08996 * 109.54020 * 176.84590 * 21 20 18 37 37 H 1.08999 * 109.54211 * 297.02393 * 21 20 18 38 38 H 1.08994 * 109.52035 * 62.92686 * 22 21 20 39 39 H 1.09005 * 109.51661 * 183.05324 * 22 21 20 40 40 H 1.09010 * 109.47455 * 177.59523 * 23 22 21 41 41 H 1.09000 * 109.48076 * 297.62503 * 23 22 21 42 42 H 1.08999 * 110.36411 * 94.48493 * 25 14 13 43 43 H 1.08999 * 110.36876 * 216.80101 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9529 -3.5889 0.6194 12 6 2.4139 -4.0936 -1.4452 13 6 2.5183 -5.6287 -1.3265 14 7 1.7464 -6.0285 -0.1409 15 6 1.6064 -7.2883 0.3172 16 8 0.9426 -7.5025 1.3093 17 6 2.2747 -8.4307 -0.4034 18 6 1.9580 -9.7430 0.3168 19 1 2.2466 -9.6615 1.3647 20 6 2.7362 -10.8863 -0.3397 21 6 2.3680 -12.2048 0.3477 22 6 0.8523 -12.4077 0.2600 23 6 0.1469 -11.2055 0.8934 24 8 0.5568 -10.0094 0.2277 25 6 1.1455 -4.8239 0.4602 26 1 -0.4850 0.8400 0.0004 27 1 0.3557 -2.3881 0.0005 28 1 3.3672 -3.6648 -1.7541 29 1 1.6210 -3.8135 -2.1387 30 1 3.5615 -5.9210 -1.2055 31 1 2.1004 -6.0987 -2.2168 32 1 3.3531 -8.2726 -0.4137 33 1 1.9049 -8.4803 -1.4275 34 1 3.8061 -10.7066 -0.2339 35 1 2.4782 -10.9424 -1.3973 36 1 2.8759 -13.0302 -0.1512 37 1 2.6724 -12.1681 1.3937 38 1 0.5563 -12.4946 -0.7854 39 1 0.5750 -13.3167 0.7939 40 1 -0.9323 -11.3244 0.7956 41 1 0.4118 -11.1433 1.9489 42 1 0.1297 -4.6822 0.0912 43 1 1.1477 -4.9011 1.5475 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968385030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:58 Heat of formation + Delta-G solvation = -79.869829 kcal Electronic energy + Delta-G solvation = -22380.892777 eV Core-core repulsion = 19039.762151 eV Total energy + Delta-G solvation = -3341.130625 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.10284 -39.09442 -37.14783 -34.11307 -33.78120 -32.99268 -31.46334 -29.53397 -28.86866 -27.28959 -24.68621 -23.77419 -22.95680 -22.19803 -20.46732 -20.06345 -18.91362 -17.32114 -16.85506 -16.69466 -16.10712 -15.74992 -15.31837 -14.77412 -14.51859 -14.50197 -14.00807 -13.60178 -13.40945 -13.17015 -12.88907 -12.78164 -12.54636 -12.28259 -12.14131 -11.77929 -11.59552 -11.44021 -11.31897 -11.14937 -10.99390 -10.85855 -10.67837 -10.49703 -10.28706 -10.02861 -9.77618 -9.60672 -9.45251 -8.96411 -8.33190 -7.04394 -5.82306 -3.12838 2.88584 3.19524 3.40600 3.46365 3.48627 3.66351 4.41743 4.50049 4.54789 4.58059 4.65614 4.87849 4.98274 5.02098 5.08293 5.20732 5.27535 5.30409 5.39332 5.44323 5.48439 5.54583 5.59073 5.61353 5.65314 5.67090 5.76914 5.80015 5.86138 6.00786 6.03506 6.16272 6.28543 6.41066 6.58886 6.64410 6.93223 7.18257 7.65697 7.81391 8.34996 8.43171 9.46754 10.01338 10.36223 11.40041 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.051488 B = 0.002843 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.688095 B = 9847.529256 C =10143.494562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.716 5.716 10 C 0.172 3.828 11 H 0.063 0.937 12 C -0.155 4.155 13 C 0.102 3.898 14 N -0.617 5.617 15 C 0.527 3.473 16 O -0.535 6.535 17 C -0.130 4.130 18 C 0.107 3.893 19 H 0.065 0.935 20 C -0.151 4.151 21 C -0.122 4.122 22 C -0.157 4.157 23 C 0.063 3.937 24 O -0.366 6.366 25 C 0.100 3.900 26 H 0.256 0.744 27 H 0.386 0.614 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.067 0.933 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.349 -23.879 -2.683 24.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.080 0.920 12 C -0.196 4.196 13 C -0.022 4.022 14 N -0.352 5.352 15 C 0.315 3.685 16 O -0.412 6.412 17 C -0.170 4.170 18 C 0.048 3.952 19 H 0.083 0.917 20 C -0.189 4.189 21 C -0.159 4.159 22 C -0.195 4.195 23 C -0.014 4.014 24 O -0.284 6.284 25 C -0.023 4.023 26 H 0.066 0.934 27 H 0.221 0.779 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.970 -23.784 -2.201 24.620 hybrid contribution 0.346 0.747 -0.096 0.829 sum 6.316 -23.037 -2.296 23.997 Atomic orbital electron populations 1.69671 1.05157 1.25764 1.57168 1.24779 0.95533 0.97824 1.02617 0.86099 0.78764 0.83956 0.77221 1.20497 1.21816 1.21792 1.19252 0.91063 0.83780 1.43291 0.90938 1.42276 1.05856 0.99372 1.88120 1.21341 0.94159 0.85656 0.92869 0.91953 1.23409 1.02775 0.91375 1.02076 1.22088 0.95097 0.97532 0.87468 1.48488 1.51154 1.06310 1.29232 1.20083 0.81289 0.82357 0.84734 1.90701 1.40682 1.83487 1.26339 1.21700 1.01882 0.92109 1.01286 1.21761 0.82319 0.92148 0.98945 0.91675 1.22242 1.00522 0.95204 1.00956 1.21569 0.95988 0.97360 1.01009 1.22222 0.95977 0.99049 1.02273 1.22503 0.99306 0.83981 0.95608 1.87999 1.22727 1.41915 1.75799 1.22535 0.97415 0.83628 0.98717 0.93399 0.77930 0.90772 0.90559 0.91986 0.92106 0.87743 0.88258 0.90768 0.90913 0.91531 0.91775 0.91142 0.91072 0.89071 0.93240 0.91452 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.56 9.98 -15.06 -0.15 -6.71 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -17.55 5.28 -51.24 -0.27 -17.82 16 10 C 0.17 3.34 3.70 -65.66 -0.24 3.09 16 11 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 12 C -0.16 -2.51 6.64 -24.90 -0.17 -2.68 16 13 C 0.10 1.33 6.48 -3.07 -0.02 1.31 16 14 N -0.62 -9.71 3.32 -170.38 -0.57 -10.28 16 15 C 0.53 8.34 7.73 -10.99 -0.08 8.25 16 16 O -0.54 -10.53 15.68 -8.78 -0.14 -10.66 16 17 C -0.13 -1.44 4.60 -27.88 -0.13 -1.57 16 18 C 0.11 1.20 2.19 -26.68 -0.06 1.14 16 19 H 0.07 0.80 7.95 -51.93 -0.41 0.39 16 20 C -0.15 -1.21 5.42 -26.59 -0.14 -1.36 16 21 C -0.12 -0.89 6.03 -26.55 -0.16 -1.05 16 22 C -0.16 -1.22 6.14 -26.59 -0.16 -1.38 16 23 C 0.06 0.64 6.84 37.21 0.25 0.90 16 24 O -0.37 -4.91 9.64 -49.57 -0.48 -5.39 16 25 C 0.10 1.83 6.53 -2.41 -0.02 1.82 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.39 10.14 7.71 -40.82 -0.31 9.83 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 1.29 8.01 -51.93 -0.42 0.88 16 43 H 0.07 1.44 8.03 -51.93 -0.42 1.03 16 LS Contribution 345.61 15.07 5.21 5.21 Total: -1.00 -32.49 345.61 -9.17 -41.66 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -7.45 Total: 6.01 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -1.17 Total: 1.34 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.11 Total: -55.13 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.62 Total: -16.06 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.49 -9.17 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968385030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.214 kcal (2) G-P(sol) polarization free energy of solvation -32.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds