Wall clock time and date at job start Tue Mar 31 2020 06:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86790 * 119.99822 * 2 1 4 4 H 1.48506 * 109.47300 * 270.00016 * 3 2 1 5 5 H 1.48500 * 109.47735 * 30.00368 * 3 2 1 6 6 H 1.48499 * 109.47150 * 150.00284 * 3 2 1 7 7 C 1.38809 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99797 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00312 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99948 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.64403 * 31.86126 * 10 9 7 12 12 C 1.55156 * 110.87384 * 268.60688 * 10 9 7 13 13 C 1.54908 * 101.58197 * 206.06517 * 12 10 9 14 14 N 1.47422 * 104.83357 * 37.01425 * 13 12 10 15 15 C 1.34774 * 125.65171 * 155.91447 * 14 13 12 16 16 O 1.21281 * 120.00298 * 179.97438 * 15 14 13 17 17 C 1.50705 * 119.99741 * 359.94939 * 15 14 13 18 18 C 1.52998 * 109.46877 * 180.02562 * 17 15 14 19 19 H 1.09003 * 109.48296 * 54.97603 * 18 17 15 20 20 C 1.53093 * 109.47994 * 174.99655 * 18 17 15 21 21 C 1.53173 * 109.16463 * 177.58706 * 20 18 17 22 22 C 1.53174 * 109.03986 * 303.02469 * 21 20 18 23 23 C 1.53094 * 109.16539 * 56.97506 * 22 21 20 24 24 O 1.42900 * 109.41376 * 302.39543 * 23 22 21 25 25 C 1.47031 * 108.70136 * 335.86884 * 14 13 12 26 26 H 0.97004 * 120.00093 * 359.97438 * 1 2 3 27 27 H 0.97002 * 119.99377 * 359.97438 * 9 7 2 28 28 H 1.08999 * 111.00338 * 324.14458 * 12 10 9 29 29 H 1.09003 * 110.99778 * 87.99241 * 12 10 9 30 30 H 1.09000 * 110.36459 * 155.84880 * 13 12 10 31 31 H 1.08998 * 110.36772 * 278.17049 * 13 12 10 32 32 H 1.09001 * 109.46804 * 299.99539 * 17 15 14 33 33 H 1.08991 * 109.47098 * 59.99762 * 17 15 14 34 34 H 1.09001 * 109.51996 * 297.49918 * 20 18 17 35 35 H 1.09000 * 109.52381 * 57.62137 * 20 18 17 36 36 H 1.09005 * 109.54372 * 62.88790 * 21 20 18 37 37 H 1.08996 * 109.54427 * 183.06151 * 21 20 18 38 38 H 1.09001 * 109.52667 * 176.88608 * 22 21 20 39 39 H 1.09002 * 109.51994 * 297.00749 * 22 21 20 40 40 H 1.08999 * 109.47555 * 62.37960 * 23 22 21 41 41 H 1.09000 * 109.48099 * 182.39830 * 23 22 21 42 42 H 1.08998 * 109.88059 * 241.64343 * 25 14 13 43 43 H 1.08994 * 109.87878 * 120.47623 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 3.0008 -3.5567 0.5361 12 6 2.3028 -4.1525 -1.4514 13 6 2.4221 -5.6826 -1.2409 14 7 1.4397 -5.9964 -0.1875 15 6 0.8593 -7.1961 0.0132 16 8 0.0615 -7.3406 0.9152 17 6 1.2014 -8.3580 -0.8835 18 6 0.4104 -9.5917 -0.4438 19 1 -0.6533 -9.3543 -0.4262 20 6 0.6617 -10.7369 -1.4282 21 6 -0.0849 -11.9853 -0.9485 22 6 0.3753 -12.3279 0.4717 23 6 0.1351 -11.1213 1.3828 24 8 0.8323 -9.9874 0.8629 25 6 1.1985 -4.7840 0.6086 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3880 0.0002 28 1 1.4567 -3.9114 -2.0948 29 1 3.2280 -3.7402 -1.8542 30 1 2.1744 -6.2125 -2.1606 31 1 3.4280 -5.9429 -0.9113 32 1 0.9442 -8.1101 -1.9134 33 1 2.2689 -8.5672 -0.8159 34 1 0.3002 -10.4534 -2.4167 35 1 1.7302 -10.9469 -1.4776 36 1 -1.1575 -11.7907 -0.9472 37 1 0.1334 -12.8194 -1.6152 38 1 -0.1911 -13.1825 0.8420 39 1 1.4376 -12.5720 0.4614 40 1 -0.9322 -10.9041 1.4244 41 1 0.5000 -11.3444 2.3853 42 1 1.4931 -4.9557 1.6438 43 1 0.1439 -4.5131 0.5610 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968385031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:01 Heat of formation + Delta-G solvation = -79.414802 kcal Electronic energy + Delta-G solvation = -22404.377355 eV Core-core repulsion = 19063.266461 eV Total energy + Delta-G solvation = -3341.110894 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.08956 -39.08552 -37.14434 -34.10262 -33.77249 -32.98327 -31.45882 -29.51434 -28.87230 -27.27890 -24.67930 -23.77595 -22.92097 -22.23430 -20.46157 -20.03029 -18.92830 -17.39923 -16.83698 -16.65893 -16.07280 -15.79254 -15.14603 -14.79050 -14.58794 -14.51174 -14.03302 -13.50246 -13.45298 -13.20498 -12.86477 -12.75945 -12.43689 -12.31300 -12.09606 -11.68673 -11.62767 -11.43621 -11.31022 -11.17157 -10.98428 -10.84873 -10.69534 -10.48949 -10.30670 -10.08330 -9.76689 -9.59001 -9.43988 -8.96701 -8.30992 -7.04376 -5.82005 -3.12627 2.91126 3.21608 3.40966 3.46377 3.48165 3.66942 4.42669 4.50923 4.54901 4.58879 4.66276 4.88526 4.98654 5.03257 5.07393 5.22232 5.27403 5.33794 5.38651 5.45804 5.49244 5.55705 5.58610 5.62247 5.65779 5.68136 5.78118 5.81053 5.86951 6.00022 6.04380 6.16212 6.30481 6.41132 6.60942 6.65880 6.91523 7.18791 7.65182 7.83051 8.35291 8.45777 9.46809 10.01538 10.36201 11.40237 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.050264 B = 0.002858 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.930541 B = 9796.356373 C =10011.993082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.066 0.934 12 C -0.155 4.155 13 C 0.099 3.901 14 N -0.617 5.617 15 C 0.526 3.474 16 O -0.535 6.535 17 C -0.130 4.130 18 C 0.107 3.893 19 H 0.066 0.934 20 C -0.151 4.151 21 C -0.122 4.122 22 C -0.157 4.157 23 C 0.063 3.937 24 O -0.366 6.366 25 C 0.100 3.900 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.049 0.951 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.065 -23.730 -4.377 24.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.084 0.916 12 C -0.197 4.197 13 C -0.024 4.024 14 N -0.351 5.351 15 C 0.314 3.686 16 O -0.412 6.412 17 C -0.170 4.170 18 C 0.048 3.952 19 H 0.083 0.917 20 C -0.189 4.189 21 C -0.159 4.159 22 C -0.195 4.195 23 C -0.014 4.014 24 O -0.285 6.285 25 C -0.023 4.023 26 H 0.066 0.934 27 H 0.221 0.779 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.848 -23.605 -3.741 24.068 hybrid contribution 0.003 0.774 -0.297 0.829 sum 2.850 -22.830 -4.038 23.359 Atomic orbital electron populations 1.69670 1.05172 1.25876 1.57071 1.24780 0.95532 0.97838 1.02587 0.86163 0.78656 0.83653 0.77516 1.21656 1.21733 1.20677 1.19231 0.91054 0.83839 1.43441 0.90947 1.42372 1.05823 0.99407 1.87962 1.21184 0.94603 0.85720 0.92525 0.91597 1.23560 1.02680 0.91824 1.01601 1.22377 0.91965 0.97903 0.90201 1.48516 1.43539 1.09874 1.33211 1.20094 0.80775 0.82450 0.85259 1.90704 1.34615 1.83003 1.32858 1.21699 1.02898 0.92499 0.99863 1.21765 0.98339 0.91853 0.83223 0.91652 1.22237 1.01664 0.95698 0.99313 1.21568 1.00172 0.97708 0.96486 1.22219 1.02308 0.98868 0.96105 1.22501 0.96771 0.85143 0.96988 1.87992 1.61956 1.47236 1.31278 1.22312 1.01184 0.84008 0.94790 0.93356 0.77950 0.90713 0.90584 0.91439 0.91704 0.87752 0.88279 0.90761 0.90926 0.91769 0.91519 0.91086 0.91158 0.93229 0.89091 0.91805 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.24 -6.62 9.96 -15.06 -0.15 -6.77 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.72 -17.60 5.23 -51.65 -0.27 -17.87 16 10 C 0.17 3.32 3.61 -66.10 -0.24 3.08 16 11 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 12 C -0.16 -2.50 6.77 -24.58 -0.17 -2.67 16 13 C 0.10 1.28 6.69 -2.53 -0.02 1.26 16 14 N -0.62 -9.79 3.33 -170.52 -0.57 -10.36 16 15 C 0.53 8.45 7.73 -10.98 -0.08 8.36 16 16 O -0.54 -10.70 15.75 -8.79 -0.14 -10.84 16 17 C -0.13 -1.46 4.42 -27.88 -0.12 -1.58 16 18 C 0.11 1.21 2.19 -26.68 -0.06 1.16 16 19 H 0.07 0.83 7.95 -51.93 -0.41 0.41 16 20 C -0.15 -1.24 5.42 -26.59 -0.14 -1.38 16 21 C -0.12 -0.91 6.03 -26.55 -0.16 -1.07 16 22 C -0.16 -1.23 6.14 -26.59 -0.16 -1.39 16 23 C 0.06 0.65 6.84 37.21 0.25 0.90 16 24 O -0.37 -4.92 9.64 -49.58 -0.48 -5.40 16 25 C 0.10 1.86 6.62 -3.06 -0.02 1.84 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.39 10.24 7.56 -40.82 -0.31 9.93 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 0.70 7.48 -51.93 -0.39 0.31 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 0.91 7.85 -51.93 -0.41 0.50 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.07 1.40 7.72 -51.93 -0.40 1.00 16 LS Contribution 344.43 15.07 5.19 5.19 Total: -1.00 -32.69 344.43 -9.11 -41.80 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -7.38 Total: 6.28 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -1.17 Total: 1.34 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.11 Total: -55.36 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.62 Total: -16.24 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.69 -9.11 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968385031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.616 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds