Wall clock time and date at job start Tue Mar 31 2020 06:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00025 * 2 1 4 4 H 1.48497 * 109.47203 * 239.99572 * 3 2 1 5 5 H 1.48499 * 109.47171 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47326 * 119.99766 * 3 2 1 7 7 C 1.38808 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99998 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00449 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00233 * 179.72199 * 9 7 2 11 11 H 1.09009 * 110.88836 * 31.11419 * 10 9 7 12 12 C 1.55156 * 111.00360 * 267.18944 * 10 9 7 13 13 C 1.54321 * 102.94366 * 206.42426 * 12 10 9 14 14 N 1.47019 * 107.27219 * 22.19107 * 13 12 10 15 15 C 1.34778 * 125.65276 * 181.09348 * 14 13 12 16 16 O 1.21273 * 120.00020 * 175.00327 * 15 14 13 17 17 C 1.50697 * 119.99434 * 355.00302 * 15 14 13 18 18 H 1.09006 * 108.95005 * 26.73351 * 17 15 14 19 19 C 1.46286 * 108.96091 * 145.49328 * 17 15 14 20 20 C 1.54202 * 112.07634 * 181.55796 * 19 17 15 21 21 C 1.50413 * 108.77134 * 282.19093 * 20 19 17 22 22 O 1.44182 * 112.77025 * 92.57553 * 21 20 19 23 23 C 1.44180 * 116.93444 * 318.47823 * 22 21 20 24 24 C 1.50415 * 112.77724 * 318.47816 * 23 22 21 25 25 C 1.47433 * 108.70019 * 1.06306 * 14 13 12 26 26 H 0.97003 * 119.99912 * 0.02562 * 1 2 3 27 27 H 0.97003 * 119.99392 * 359.97438 * 9 7 2 28 28 H 1.09001 * 110.72219 * 324.79336 * 12 10 9 29 29 H 1.09002 * 110.71772 * 88.05822 * 12 10 9 30 30 H 1.09002 * 109.87826 * 262.77688 * 13 12 10 31 31 H 1.08993 * 109.88325 * 141.61398 * 13 12 10 32 32 H 1.08996 * 108.96404 * 302.23033 * 19 17 15 33 33 H 1.09012 * 108.95877 * 60.97871 * 19 17 15 34 34 H 1.09000 * 109.58873 * 41.97974 * 20 19 17 35 35 H 1.08998 * 109.58415 * 162.40728 * 20 19 17 36 36 H 1.09005 * 108.82216 * 213.42568 * 21 20 19 37 37 H 1.08998 * 108.82102 * 331.72627 * 21 20 19 38 38 H 1.09000 * 108.82147 * 79.31902 * 23 22 21 39 39 H 1.08999 * 108.82843 * 197.73164 * 23 22 21 40 40 H 1.09002 * 109.58490 * 332.78245 * 24 23 22 41 41 H 1.09006 * 109.58950 * 212.35804 * 24 23 22 42 42 H 1.09004 * 110.36202 * 217.03283 * 25 14 13 43 43 H 1.08994 * 110.46211 * 94.75614 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 3.0094 -3.5586 0.5178 12 6 2.2690 -4.1708 -1.4537 13 6 2.3882 -5.6977 -1.2649 14 7 1.7389 -6.0318 0.0112 15 6 1.6491 -7.2648 0.5478 16 8 1.1692 -7.4122 1.6518 17 6 2.1450 -8.4603 -0.2241 18 1 2.9273 -8.1382 -0.9115 19 6 2.7071 -9.4320 0.7139 20 6 3.2731 -10.6724 -0.0064 21 6 2.1299 -11.5675 -0.3995 22 8 1.6494 -11.3057 -1.7335 23 6 1.5378 -9.9234 -2.1279 24 6 0.9765 -9.0506 -1.0389 25 6 1.2029 -4.7943 0.6070 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3881 0.0005 28 1 1.4105 -3.9253 -2.0789 29 1 3.1859 -3.7619 -1.8782 30 1 3.4389 -5.9863 -1.2329 31 1 1.8849 -6.2128 -2.0830 32 1 3.5071 -8.9556 1.2804 33 1 1.9259 -9.7506 1.4043 34 1 3.8166 -10.3608 -0.8983 35 1 3.9440 -11.2097 0.6639 36 1 2.4595 -12.6049 -0.3417 37 1 1.3107 -11.4213 0.3044 38 1 2.5267 -9.5542 -2.3996 39 1 0.8867 -9.8578 -2.9996 40 1 0.3393 -9.6463 -0.3852 41 1 0.3948 -8.2422 -1.4819 42 1 1.3181 -4.8143 1.6907 43 1 0.1540 -4.6661 0.3399 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968531381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:07 Heat of formation + Delta-G solvation = -73.416049 kcal Electronic energy + Delta-G solvation = -22814.268002 eV Core-core repulsion = 19473.417233 eV Total energy + Delta-G solvation = -3340.850768 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.66084 -38.94821 -37.34564 -34.85314 -34.18042 -32.71388 -31.47508 -29.59238 -28.44243 -27.45937 -25.83846 -23.84535 -22.87912 -21.35495 -20.82907 -20.12976 -19.06561 -17.58131 -17.33650 -16.84646 -16.35083 -15.92478 -15.25924 -14.94066 -14.63226 -14.13608 -13.88839 -13.73078 -13.43559 -13.37295 -13.21817 -12.78207 -12.72223 -12.45132 -12.01770 -11.76312 -11.71387 -11.50038 -11.21601 -11.09230 -11.03550 -10.86427 -10.75760 -10.69888 -10.34668 -10.13489 -9.81615 -9.77419 -9.56911 -9.00194 -8.45692 -7.09758 -5.86247 -3.17196 2.67378 3.06237 3.38833 3.43717 3.44612 3.50919 4.29346 4.33538 4.49843 4.51278 4.61758 4.71631 4.89859 4.99434 5.08458 5.17415 5.21132 5.27842 5.29756 5.37052 5.43774 5.53460 5.55085 5.56959 5.67810 5.71711 5.74810 5.79927 5.90762 5.94068 6.05272 6.10391 6.20291 6.32013 6.50036 6.57542 6.84675 6.95238 7.60856 7.68116 8.25200 8.31261 9.42619 9.96179 10.31060 11.35821 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043099 B = 0.003133 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.509890 B = 8935.722408 C = 9060.456054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.714 5.714 10 C 0.172 3.828 11 H 0.066 0.934 12 C -0.156 4.156 13 C 0.101 3.899 14 N -0.612 5.612 15 C 0.528 3.472 16 O -0.545 6.545 17 C -0.099 4.099 18 H 0.089 0.911 19 C -0.113 4.113 20 C -0.151 4.151 21 C 0.061 3.939 22 O -0.395 6.395 23 C 0.067 3.933 24 C -0.142 4.142 25 C 0.095 3.905 26 H 0.258 0.742 27 H 0.386 0.614 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.931 -20.973 -4.203 22.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.378 4.378 8 H 0.090 0.910 9 N -0.353 5.353 10 C 0.060 3.940 11 H 0.084 0.916 12 C -0.197 4.197 13 C -0.022 4.022 14 N -0.346 5.346 15 C 0.316 3.684 16 O -0.423 6.423 17 C -0.120 4.120 18 H 0.107 0.893 19 C -0.151 4.151 20 C -0.189 4.189 21 C -0.015 4.015 22 O -0.315 6.315 23 C -0.010 4.010 24 C -0.180 4.180 25 C -0.028 4.028 26 H 0.067 0.933 27 H 0.221 0.779 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.719 -21.072 -3.675 22.141 hybrid contribution 0.256 1.299 0.062 1.325 sum 5.975 -19.773 -3.614 20.969 Atomic orbital electron populations 1.69654 1.05171 1.26069 1.56857 1.24776 0.95538 0.97844 1.02412 0.86235 0.78532 0.83282 0.77907 1.21157 1.21618 1.21141 1.19182 0.91029 0.83804 1.43804 0.91011 1.42257 1.05832 0.99335 1.87924 1.21289 0.94839 0.85700 0.92176 0.91561 1.23437 1.02941 0.91346 1.02019 1.22108 0.96762 0.98132 0.85229 1.48503 1.56407 1.06874 1.22786 1.20257 0.78994 0.83023 0.86094 1.90688 1.46213 1.85214 1.20143 1.20409 0.98967 0.94259 0.98414 0.89320 1.20556 1.01393 0.95211 0.97948 1.21926 0.98647 0.96814 1.01510 1.22345 0.95712 0.99218 0.84254 1.88248 1.86718 1.24924 1.31636 1.22277 1.00526 0.81575 0.96595 1.21882 0.97434 1.00380 0.98263 1.22614 0.98324 0.82969 0.98875 0.93255 0.77930 0.90549 0.90661 0.91929 0.92022 0.91318 0.90321 0.90641 0.90069 0.89573 0.92866 0.92865 0.89092 0.89820 0.89863 0.90584 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.39 13.06 55.49 0.72 -26.66 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.25 -6.60 9.96 -15.06 -0.15 -6.75 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.71 -17.14 5.24 -51.35 -0.27 -17.41 16 10 C 0.17 3.26 3.71 -65.79 -0.24 3.01 16 11 H 0.07 1.28 8.09 -51.92 -0.42 0.86 16 12 C -0.16 -2.43 6.65 -24.90 -0.17 -2.59 16 13 C 0.10 1.26 6.01 -3.07 -0.02 1.24 16 14 N -0.61 -9.13 3.33 -170.53 -0.57 -9.70 16 15 C 0.53 7.85 6.69 -10.99 -0.07 7.78 16 16 O -0.54 -10.15 16.38 5.56 0.09 -10.06 16 17 C -0.10 -1.05 1.78 -94.34 -0.17 -1.22 16 18 H 0.09 0.81 6.35 -51.93 -0.33 0.48 16 19 C -0.11 -1.12 4.20 -29.30 -0.12 -1.25 16 20 C -0.15 -1.16 5.61 -27.39 -0.15 -1.31 16 21 C 0.06 0.50 6.26 35.87 0.22 0.73 16 22 O -0.40 -4.00 10.88 -35.23 -0.38 -4.39 16 23 C 0.07 0.57 6.26 35.87 0.22 0.79 16 24 C -0.14 -1.37 4.95 -27.39 -0.14 -1.50 16 25 C 0.10 1.68 6.58 -2.53 -0.02 1.66 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.39 9.91 7.76 -40.82 -0.32 9.59 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 0.67 7.90 -51.93 -0.41 0.26 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 33 H 0.08 0.89 7.15 -51.92 -0.37 0.51 16 34 H 0.07 0.57 7.15 -51.93 -0.37 0.19 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.46 6.67 -51.93 -0.35 0.11 16 38 H 0.05 0.41 6.67 -51.93 -0.35 0.06 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.88 7.15 -51.93 -0.37 0.51 16 41 H 0.08 0.81 8.01 -51.93 -0.42 0.39 16 42 H 0.08 1.43 7.99 -51.93 -0.41 1.02 16 43 H 0.07 1.23 8.00 -51.93 -0.42 0.82 16 LS Contribution 335.94 15.07 5.06 5.06 Total: -1.00 -31.25 335.94 -8.29 -39.55 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -7.03 Total: 6.61 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -0.90 Total: 0.24 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.11 Total: -53.77 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.29 Total: -14.44 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.25 -8.29 -39.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968531381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.868 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds