Wall clock time and date at job start Tue Mar 31 2020 06:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00286 * 2 1 4 4 H 1.48500 * 109.46908 * 270.00151 * 3 2 1 5 5 H 1.48505 * 109.46858 * 29.99458 * 3 2 1 6 6 H 1.48497 * 109.47260 * 149.99585 * 3 2 1 7 7 C 1.38816 * 119.99660 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99446 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00147 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99699 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.64447 * 31.85591 * 10 9 7 12 12 C 1.55159 * 110.87258 * 268.60537 * 10 9 7 13 13 C 1.55125 * 101.48734 * 205.90171 * 12 10 9 14 14 N 1.47422 * 104.72224 * 37.29577 * 13 12 10 15 15 C 1.34777 * 125.64739 * 155.81714 * 14 13 12 16 16 O 1.21284 * 120.00133 * 179.69396 * 15 14 13 17 17 C 1.50700 * 120.00079 * 359.69363 * 15 14 13 18 18 H 1.09002 * 108.95960 * 299.99939 * 17 15 14 19 19 C 1.54198 * 108.97791 * 181.19849 * 17 15 14 20 20 C 1.50498 * 109.13503 * 161.80221 * 19 17 15 21 21 C 1.53814 * 112.40796 * 90.39885 * 20 19 17 22 22 O 1.43990 * 113.41590 * 317.90932 * 21 20 19 23 23 C 1.40324 * 116.58176 * 317.89189 * 22 21 20 24 24 C 1.46291 * 108.97901 * 58.80125 * 17 15 14 25 25 C 1.47023 * 108.70382 * 335.55477 * 14 13 12 26 26 H 0.97000 * 120.00255 * 0.02562 * 1 2 3 27 27 H 0.96991 * 119.99956 * 359.97438 * 9 7 2 28 28 H 1.08993 * 111.00312 * 324.14557 * 12 10 9 29 29 H 1.09007 * 111.00097 * 87.95696 * 12 10 9 30 30 H 1.09001 * 110.49539 * 278.45770 * 13 12 10 31 31 H 1.08996 * 110.34436 * 156.06308 * 13 12 10 32 32 H 1.09005 * 109.54236 * 281.78373 * 19 17 15 33 33 H 1.08997 * 109.54297 * 42.03335 * 19 17 15 34 34 H 1.08996 * 108.89209 * 329.65811 * 20 19 17 35 35 H 1.08995 * 108.84876 * 211.10651 * 20 19 17 36 36 H 1.08996 * 108.69613 * 196.89244 * 21 20 19 37 37 H 1.09002 * 108.59588 * 78.84606 * 21 20 19 38 38 H 1.09003 * 109.59402 * 335.27635 * 23 22 21 39 39 H 1.08994 * 109.60033 * 214.80686 * 23 22 21 40 40 H 1.09003 * 108.93313 * 302.68192 * 24 17 15 41 41 H 1.09004 * 108.93323 * 61.36785 * 24 17 15 42 42 H 1.08997 * 109.88548 * 120.70384 * 25 14 13 43 43 H 1.09006 * 109.87821 * 241.71778 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0004 -3.5564 0.5389 12 6 2.3038 -4.1532 -1.4488 13 6 2.4270 -5.6846 -1.2341 14 7 1.4397 -5.9964 -0.1847 15 6 0.8591 -7.1960 0.0160 16 8 0.0608 -7.3402 0.9177 17 6 1.2017 -8.3583 -0.8800 18 1 0.9423 -8.1021 -1.9072 19 6 0.3765 -9.5864 -0.4458 20 6 0.3615 -10.5917 -1.5657 21 6 1.5251 -11.5930 -1.4705 22 8 2.7782 -10.9815 -1.1111 23 6 3.0811 -9.7595 -1.7307 24 6 2.6404 -8.6116 -0.8016 25 6 1.1980 -4.7837 0.6106 26 1 -0.4850 0.8400 -0.0004 27 1 0.3555 -2.3881 0.0005 28 1 1.4582 -3.9123 -2.0930 29 1 3.2290 -3.7406 -1.8514 30 1 3.4314 -5.9434 -0.8989 31 1 2.1842 -6.2169 -2.1538 32 1 0.8267 -10.0335 0.4405 33 1 -0.6448 -9.2787 -0.2215 34 1 0.4285 -10.0623 -2.5161 35 1 -0.5797 -11.1405 -1.5337 36 1 1.6413 -12.0865 -2.4353 37 1 1.2761 -12.3451 -0.7218 38 1 2.5475 -9.6880 -2.6785 39 1 4.1548 -9.6952 -1.9072 40 1 3.1750 -7.7041 -1.0823 41 1 2.8985 -8.8704 0.2253 42 1 0.1434 -4.5127 0.5622 43 1 1.4893 -4.9559 1.6468 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968531382.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:10 Heat of formation + Delta-G solvation = -69.623293 kcal Electronic energy + Delta-G solvation = -22896.064635 eV Core-core repulsion = 19555.378333 eV Total energy + Delta-G solvation = -3340.686302 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.64014 -38.97290 -37.33452 -34.92647 -34.17770 -32.89284 -31.39436 -29.56209 -28.13402 -27.25272 -25.92730 -23.80107 -23.00600 -21.34376 -20.85692 -20.08272 -19.18359 -17.52233 -17.38861 -16.62452 -16.22317 -15.83256 -15.44923 -15.16912 -14.61665 -14.15797 -13.99465 -13.55737 -13.48660 -13.42431 -13.11948 -12.54514 -12.51550 -12.49622 -11.89834 -11.81657 -11.60025 -11.38205 -11.23006 -10.97841 -10.88919 -10.82620 -10.75136 -10.60754 -10.34728 -10.12001 -9.97510 -9.77442 -9.37208 -8.99771 -8.40886 -7.07716 -5.84773 -3.15662 2.78368 3.13456 3.39011 3.44432 3.46292 3.56600 4.30604 4.38778 4.52212 4.58556 4.69561 4.75879 4.97108 4.98707 5.06102 5.17270 5.24017 5.31163 5.32363 5.36191 5.49538 5.51101 5.53677 5.66351 5.71077 5.72746 5.81335 5.90549 5.93752 6.07741 6.12558 6.16006 6.24239 6.34463 6.54882 6.59112 6.86279 7.10811 7.62372 7.73194 8.31436 8.33790 9.43962 9.98175 10.32792 11.37392 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042961 B = 0.003231 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.594694 B = 8664.939635 C = 9032.184426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.073 0.927 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.067 0.933 12 C -0.156 4.156 13 C 0.097 3.903 14 N -0.612 5.612 15 C 0.527 3.473 16 O -0.545 6.545 17 C -0.097 4.097 18 H 0.091 0.909 19 C -0.099 4.099 20 C -0.155 4.155 21 C 0.063 3.937 22 O -0.384 6.384 23 C 0.072 3.928 24 C -0.158 4.158 25 C 0.099 3.901 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.209 -21.373 -6.234 22.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.377 4.377 8 H 0.091 0.909 9 N -0.355 5.355 10 C 0.060 3.940 11 H 0.084 0.916 12 C -0.197 4.197 13 C -0.026 4.026 14 N -0.346 5.346 15 C 0.315 3.685 16 O -0.422 6.422 17 C -0.118 4.118 18 H 0.109 0.891 19 C -0.137 4.137 20 C -0.192 4.192 21 C -0.014 4.014 22 O -0.303 6.303 23 C -0.005 4.005 24 C -0.195 4.195 25 C -0.025 4.025 26 H 0.067 0.933 27 H 0.221 0.779 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.960 -21.420 -5.576 22.683 hybrid contribution -0.089 1.194 -0.345 1.246 sum 4.871 -20.226 -5.921 21.630 Atomic orbital electron populations 1.69666 1.05184 1.25923 1.56948 1.24784 0.95528 0.97853 1.02492 0.86163 0.78669 0.83627 0.77534 1.21636 1.21711 1.20652 1.19227 0.91056 0.83819 1.43616 0.90931 1.42365 1.05820 0.99387 1.87953 1.21177 0.94592 0.85716 0.92508 0.91553 1.23629 1.02757 0.91692 1.01651 1.22530 0.91802 0.97924 0.90336 1.48495 1.43030 1.09818 1.33248 1.20316 0.80389 0.82608 0.85172 1.90684 1.34877 1.83291 1.33357 1.20351 0.97423 0.94183 0.99872 0.89148 1.21133 1.01086 0.93160 0.98283 1.21942 0.99266 0.98302 0.99731 1.22962 0.83274 0.94693 1.00430 1.87469 1.37171 1.36748 1.68923 1.22294 1.00369 0.83281 0.94554 1.21363 0.94848 1.00560 1.02779 1.22350 1.01334 0.83989 0.94778 0.93325 0.77944 0.90646 0.90520 0.91345 0.91318 0.90701 0.90234 0.91675 0.90366 0.93255 0.89514 0.92876 0.89408 0.89690 0.90495 0.91207 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.25 -6.59 9.96 -15.06 -0.15 -6.74 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -17.34 5.23 -51.65 -0.27 -17.61 16 10 C 0.17 3.25 3.60 -66.10 -0.24 3.01 16 11 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 12 C -0.16 -2.45 6.79 -24.46 -0.17 -2.61 16 13 C 0.10 1.21 5.08 -2.41 -0.01 1.19 16 14 N -0.61 -9.37 3.32 -170.38 -0.56 -9.93 16 15 C 0.53 8.19 7.16 -10.99 -0.08 8.11 16 16 O -0.54 -10.54 15.94 5.55 0.09 -10.45 16 17 C -0.10 -1.09 1.51 -94.34 -0.14 -1.23 16 18 H 0.09 0.89 7.29 -51.93 -0.38 0.51 16 19 C -0.10 -1.07 4.50 -27.35 -0.12 -1.19 16 20 C -0.15 -1.22 5.32 -27.56 -0.15 -1.36 16 21 C 0.06 0.48 6.66 37.58 0.25 0.74 16 22 O -0.38 -3.81 10.17 -33.69 -0.34 -4.16 16 23 C 0.07 0.60 6.38 37.74 0.24 0.84 16 24 C -0.16 -1.54 4.55 -29.34 -0.13 -1.67 16 25 C 0.10 1.77 6.62 -3.06 -0.02 1.75 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.39 10.12 7.56 -40.82 -0.31 9.81 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.07 0.73 7.07 -51.93 -0.37 0.37 16 31 H 0.07 0.70 7.26 -51.93 -0.38 0.33 16 32 H 0.07 0.89 7.82 -51.93 -0.41 0.48 16 33 H 0.08 0.98 7.44 -51.93 -0.39 0.59 16 34 H 0.06 0.47 6.84 -51.93 -0.35 0.12 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.37 6.98 -51.93 -0.36 0.01 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.76 4.50 -51.93 -0.23 0.53 16 41 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 42 H 0.07 1.39 7.72 -51.93 -0.40 0.99 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 332.04 15.07 5.00 5.00 Total: -1.00 -31.76 332.04 -8.12 -39.88 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -6.92 Total: 6.89 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -0.82 Total: 0.46 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.11 Total: -54.44 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.25 Total: -14.61 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.76 -8.12 -39.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968531382.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.743 kcal (2) G-P(sol) polarization free energy of solvation -31.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds