Wall clock time and date at job start Tue Mar 31 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00187 * 2 1 4 4 H 1.48503 * 109.47117 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47076 * 299.99409 * 3 2 1 6 6 H 1.48496 * 109.47353 * 59.99703 * 3 2 1 7 7 C 1.38817 * 119.99488 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99417 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00110 * 180.02562 * 9 7 2 11 11 C 1.53033 * 109.46478 * 155.00130 * 10 9 7 12 12 C 1.53191 * 109.31622 * 181.38491 * 11 10 9 13 13 N 1.46919 * 108.77538 * 305.36407 * 12 11 10 14 14 C 1.34774 * 120.63105 * 233.58438 * 13 12 11 15 15 O 1.21281 * 120.00047 * 359.97438 * 14 13 12 16 16 C 1.50704 * 120.00107 * 179.97438 * 14 13 12 17 17 C 1.53004 * 109.47068 * 179.97438 * 16 14 13 18 18 H 1.09002 * 110.27448 * 54.30240 * 17 16 14 19 19 C 1.54945 * 110.39100 * 176.44832 * 17 16 14 20 20 C 1.55304 * 100.94045 * 155.40253 * 19 17 16 21 21 C 1.54376 * 102.25567 * 325.86882 * 20 19 17 22 22 O 1.43240 * 107.58930 * 21.35352 * 21 20 19 23 23 C 1.46932 * 118.73909 * 53.85408 * 13 12 11 24 24 C 1.53041 * 109.45714 * 275.06593 * 10 9 7 25 25 H 0.97003 * 119.99299 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00816 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.44744 * 35.02713 * 10 9 7 28 28 H 1.08993 * 109.50311 * 61.43030 * 11 10 9 29 29 H 1.09006 * 109.52153 * 301.35223 * 11 10 9 30 30 H 1.08997 * 109.58924 * 185.57465 * 12 11 10 31 31 H 1.09000 * 109.58560 * 65.14613 * 12 11 10 32 32 H 1.09005 * 109.47032 * 60.00609 * 16 14 13 33 33 H 1.08997 * 109.47366 * 300.00341 * 16 14 13 34 34 H 1.08997 * 111.12470 * 273.31972 * 19 17 16 35 35 H 1.08995 * 111.12619 * 37.48960 * 19 17 16 36 36 H 1.08998 * 110.85543 * 207.67443 * 20 19 17 37 37 H 1.09010 * 110.84919 * 84.05659 * 20 19 17 38 38 H 1.08999 * 109.83271 * 261.84174 * 21 20 19 39 39 H 1.09003 * 109.83223 * 140.86572 * 21 20 19 40 40 H 1.08999 * 109.58266 * 65.93235 * 23 13 12 41 41 H 1.09000 * 109.58623 * 186.35463 * 23 13 12 42 42 H 1.09000 * 109.50149 * 298.56183 * 24 10 9 43 43 H 1.09009 * 109.49829 * 58.66112 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0578 -3.6569 0.0017 11 6 1.1797 -4.7520 0.6112 12 6 1.9611 -6.0693 0.6425 13 7 2.4416 -6.3663 -0.7138 14 6 2.1741 -7.5538 -1.2923 15 8 1.5314 -8.3894 -0.6926 16 6 2.6734 -7.8433 -2.6844 17 6 2.2363 -9.2492 -3.1010 18 1 1.1570 -9.3566 -2.9932 19 6 2.6619 -9.5359 -4.5630 20 6 2.7317 -11.0873 -4.5508 21 6 3.2217 -11.3821 -3.1169 22 8 2.9170 -10.2374 -2.3114 23 6 3.2245 -5.3465 -1.4251 24 6 2.4242 -4.0353 -1.4352 25 1 -0.4849 0.8401 -0.0004 26 1 0.3554 -2.3881 0.0005 27 1 2.9678 -3.5502 0.5923 28 1 0.2812 -4.8763 0.0070 29 1 0.8994 -4.4711 1.6265 30 1 1.3087 -6.8732 0.9833 31 1 2.8109 -5.9741 1.3184 32 1 3.7617 -7.7821 -2.7001 33 1 2.2583 -7.1127 -3.3787 34 1 1.9095 -9.1820 -5.2678 35 1 3.6372 -9.1006 -4.7808 36 1 3.4485 -11.4493 -5.2878 37 1 1.7463 -11.5213 -4.7208 38 1 4.2979 -11.5546 -3.1220 39 1 2.7073 -12.2587 -2.7231 40 1 4.1752 -5.1937 -0.9143 41 1 3.4059 -5.6735 -2.4490 42 1 1.5139 -4.1664 -2.0203 43 1 3.0302 -3.2440 -1.8767 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990008376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:08 Heat of formation + Delta-G solvation = -77.574220 kcal Electronic energy + Delta-G solvation = -22583.401923 eV Core-core repulsion = 19242.370842 eV Total energy + Delta-G solvation = -3341.031080 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.26552 -39.20466 -37.22548 -34.44324 -32.73851 -32.18730 -31.73432 -30.60374 -29.22800 -26.94206 -24.72661 -22.98075 -22.74373 -21.95536 -21.46095 -20.12068 -18.69572 -17.28442 -17.10330 -16.85618 -16.00417 -15.60792 -15.26903 -14.80527 -14.70933 -13.92949 -13.74957 -13.64577 -13.52180 -13.30253 -13.15123 -12.84283 -12.33495 -12.10849 -11.96560 -11.92298 -11.53892 -11.45926 -11.34282 -11.09709 -10.96600 -10.86335 -10.81718 -10.46746 -10.21033 -9.82336 -9.68621 -9.61895 -9.55001 -8.92720 -8.40598 -6.99197 -5.79316 -3.08438 2.81740 3.15627 3.40883 3.46421 3.48834 3.62598 4.19573 4.39088 4.56020 4.60043 4.70425 4.88023 4.98185 5.06933 5.16107 5.28270 5.34092 5.36441 5.39498 5.43511 5.46454 5.49227 5.54188 5.60507 5.67293 5.72204 5.75600 5.92416 5.97700 6.05199 6.25030 6.37944 6.41865 6.52435 6.66326 6.91091 6.92797 7.04238 7.60863 7.67252 8.37047 8.39033 9.50253 10.08108 10.42820 11.43351 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038342 B = 0.003083 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.085576 B = 9079.789181 C = 9413.229064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.179 3.821 11 C -0.138 4.138 12 C 0.117 3.883 13 N -0.610 5.610 14 C 0.516 3.484 15 O -0.539 6.539 16 C -0.141 4.141 17 C 0.098 3.902 18 H 0.078 0.922 19 C -0.154 4.154 20 C -0.156 4.156 21 C 0.048 3.952 22 O -0.366 6.366 23 C 0.107 3.893 24 C -0.150 4.150 25 H 0.255 0.745 26 H 0.384 0.616 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.268 -19.699 -9.107 22.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.069 3.931 11 C -0.177 4.177 12 C -0.006 4.006 13 N -0.344 5.344 14 C 0.304 3.696 15 O -0.416 6.416 16 C -0.181 4.181 17 C 0.040 3.960 18 H 0.096 0.904 19 C -0.192 4.192 20 C -0.193 4.193 21 C -0.029 4.029 22 O -0.285 6.285 23 C -0.016 4.016 24 C -0.192 4.192 25 H 0.065 0.935 26 H 0.217 0.783 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.096 -19.961 -8.543 22.843 hybrid contribution 0.151 1.102 -0.371 1.172 sum 7.247 -18.860 -8.915 22.083 Atomic orbital electron populations 1.69679 1.05130 1.25553 1.57692 1.24759 0.95510 0.97726 1.03035 0.86133 0.78768 0.84188 0.77191 1.20550 1.21909 1.21878 1.19278 0.90989 0.84091 1.42619 0.91118 1.42454 1.05823 0.99736 1.88485 1.20164 0.94453 0.86066 0.92467 1.22200 0.99182 0.94209 1.02150 1.21578 0.98626 0.97911 0.82495 1.48185 1.54150 1.14972 1.17052 1.20434 0.79847 0.81269 0.88098 1.90689 1.40186 1.45704 1.64991 1.21894 1.03481 0.97237 0.95455 1.22701 0.97252 0.87463 0.88573 0.90386 1.23344 1.02954 0.95837 0.97025 1.23110 1.02516 0.96131 0.97584 1.23106 1.00012 0.89784 0.89950 1.88557 1.77746 1.27080 1.35159 1.21944 0.94478 0.88829 0.96374 1.22748 0.99953 0.94730 1.01734 0.93549 0.78275 0.93445 0.91909 0.90645 0.89437 0.91771 0.88312 0.87577 0.89658 0.90112 0.90086 0.90504 0.91590 0.91631 0.91517 0.90576 0.92192 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -17.73 5.12 -53.38 -0.27 -18.01 16 10 C 0.18 3.40 2.73 -67.89 -0.19 3.22 16 11 C -0.14 -2.33 5.55 -26.62 -0.15 -2.47 16 12 C 0.12 1.75 6.43 -3.71 -0.02 1.73 16 13 N -0.61 -8.75 2.97 -172.51 -0.51 -9.26 16 14 C 0.52 7.66 7.61 -10.98 -0.08 7.57 16 15 O -0.54 -9.94 14.98 -4.41 -0.07 -10.01 16 16 C -0.14 -1.51 3.79 -27.88 -0.11 -1.62 16 17 C 0.10 1.07 2.91 -25.70 -0.07 1.00 16 18 H 0.08 0.95 7.96 -51.93 -0.41 0.54 16 19 C -0.15 -1.14 6.57 -24.48 -0.16 -1.30 16 20 C -0.16 -1.07 7.02 -24.79 -0.17 -1.24 16 21 C 0.05 0.44 7.79 37.88 0.30 0.73 16 22 O -0.37 -4.80 10.50 -45.20 -0.47 -5.27 16 23 C 0.11 1.36 6.37 -3.48 -0.02 1.34 16 24 C -0.15 -2.46 5.67 -26.39 -0.15 -2.61 16 25 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.38 10.12 7.80 -40.82 -0.32 9.80 16 27 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.09 1.37 7.01 -51.93 -0.36 1.01 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.10 0.92 7.93 -51.93 -0.41 0.51 16 33 H 0.11 0.92 7.70 -51.93 -0.40 0.52 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.53 8.06 -51.93 -0.42 0.11 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 0.77 5.93 -51.93 -0.31 0.46 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 LS Contribution 341.53 15.07 5.15 5.15 Total: -1.00 -33.01 341.53 -8.81 -41.81 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.25 Total: 6.53 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.08 Total: -0.76 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.06 Total: -54.47 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.54 Total: -15.28 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.01 -8.81 -41.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990008376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.763 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds