Wall clock time and date at job start Tue Mar 31 2020 06:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99741 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99902 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 C 1.53042 * 109.45539 * 275.02532 * 10 9 7 12 12 C 1.53197 * 109.30811 * 178.60259 * 11 10 9 13 13 N 1.46921 * 108.76530 * 54.65613 * 12 11 10 14 14 C 1.34783 * 120.62757 * 126.35801 * 13 12 11 15 15 O 1.21281 * 119.99519 * 180.02562 * 14 13 12 16 16 C 1.50699 * 120.00027 * 0.02807 * 14 13 12 17 17 H 1.08999 * 109.47525 * 304.99458 * 16 14 13 18 18 C 1.53091 * 109.48121 * 65.02026 * 16 14 13 19 19 C 1.53180 * 109.16216 * 177.59042 * 18 16 14 20 20 C 1.53180 * 109.03675 * 303.02152 * 19 18 16 21 21 C 1.53086 * 109.16439 * 56.97620 * 20 19 18 22 22 O 1.42895 * 109.42754 * 302.39888 * 21 20 19 23 23 C 1.46925 * 118.73959 * 306.38213 * 13 12 11 24 24 C 1.53037 * 109.45927 * 154.97630 * 10 9 7 25 25 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 27 27 H 1.08994 * 109.46327 * 34.99900 * 10 9 7 28 28 H 1.09000 * 109.50310 * 298.56537 * 11 10 9 29 29 H 1.09007 * 109.49832 * 58.66975 * 11 10 9 30 30 H 1.09005 * 109.60055 * 294.86724 * 12 11 10 31 31 H 1.09006 * 109.70200 * 174.50883 * 12 11 10 32 32 H 1.09000 * 109.52349 * 297.49512 * 18 16 14 33 33 H 1.08994 * 109.52716 * 57.68687 * 18 16 14 34 34 H 1.09001 * 109.54265 * 62.88522 * 19 18 16 35 35 H 1.09000 * 109.54403 * 183.14643 * 19 18 16 36 36 H 1.09000 * 109.52298 * 176.88615 * 20 19 18 37 37 H 1.08996 * 109.52081 * 297.00878 * 20 19 18 38 38 H 1.09005 * 109.47819 * 62.37790 * 21 20 19 39 39 H 1.09006 * 109.48183 * 182.39629 * 21 20 19 40 40 H 1.09001 * 109.58722 * 293.81653 * 23 13 12 41 41 H 1.09010 * 109.70155 * 173.46379 * 23 13 12 42 42 H 1.09003 * 109.49641 * 301.33468 * 24 10 9 43 43 H 1.09000 * 109.50240 * 61.39770 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 2.0582 -3.6567 0.0135 11 6 2.4226 -4.0426 -1.4219 12 6 3.2186 -5.3514 -1.4081 13 7 2.4414 -6.3697 -0.6886 14 6 2.1725 -7.5598 -1.2613 15 8 1.5295 -8.3919 -0.6571 16 6 2.6709 -7.8565 -2.6522 17 1 2.3284 -7.0786 -3.3345 18 6 4.2013 -7.8953 -2.6487 19 6 4.6983 -8.2566 -4.0519 20 6 4.0837 -9.5959 -4.4702 21 6 2.5578 -9.4914 -4.4032 22 8 2.1643 -9.1225 -3.0800 23 6 1.9625 -6.0658 0.6667 24 6 1.1808 -4.7488 0.6296 25 1 -0.4850 0.8400 -0.0004 26 1 0.3556 -2.3880 0.0068 27 1 2.9688 -3.5472 0.6024 28 1 1.5116 -4.1768 -2.0051 29 1 3.0280 -3.2535 -1.8682 30 1 4.1716 -5.1945 -0.9027 31 1 3.3977 -5.6834 -2.4308 32 1 4.5898 -6.9171 -2.3653 33 1 4.5451 -8.6452 -1.9363 34 1 4.3968 -7.4813 -4.7563 35 1 5.7850 -8.3407 -4.0434 36 1 4.3881 -9.8339 -5.4894 37 1 4.4259 -10.3803 -3.7952 38 1 2.2140 -8.7350 -5.1087 39 1 2.1159 -10.4545 -4.6588 40 1 2.8130 -5.9672 1.3413 41 1 1.3111 -6.8676 1.0147 42 1 0.9021 -4.4625 1.6438 43 1 0.2813 -4.8759 0.0273 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991098978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:33 Heat of formation + Delta-G solvation = -74.521627 kcal Electronic energy + Delta-G solvation = -23093.220318 eV Core-core repulsion = 19752.321609 eV Total energy + Delta-G solvation = -3340.898710 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.62441 -38.87050 -37.21871 -34.65419 -33.84303 -32.48632 -31.60427 -30.47684 -29.22975 -26.19639 -24.74434 -24.06618 -22.99118 -22.46462 -20.77921 -20.25669 -19.06139 -17.42402 -17.04858 -16.61841 -16.02295 -15.63586 -15.01921 -14.84304 -14.65516 -14.41731 -13.92884 -13.77407 -13.58627 -13.37548 -13.23807 -12.96424 -12.79038 -12.29969 -11.97926 -11.70839 -11.63122 -11.41274 -11.31067 -10.99449 -10.90772 -10.85065 -10.68352 -10.48399 -10.26243 -9.86115 -9.75810 -9.69878 -9.48823 -8.93813 -8.51563 -7.01221 -5.80582 -3.10100 2.63525 2.76406 3.39983 3.45209 3.47221 3.77813 4.31055 4.48981 4.50335 4.54673 4.65762 4.75657 4.84341 5.01623 5.13165 5.23364 5.28772 5.33039 5.37126 5.41572 5.47685 5.50455 5.55400 5.61132 5.69408 5.70167 5.75759 5.91526 5.95094 5.98417 6.19926 6.33296 6.36167 6.48055 6.57520 6.84754 6.92880 7.00738 7.47784 7.65037 8.24162 8.37573 9.48810 10.06311 10.40921 11.41934 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028197 B = 0.003645 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.779726 B = 7679.849755 C = 8194.762679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.152 4.152 12 C 0.101 3.899 13 N -0.603 5.603 14 C 0.522 3.478 15 O -0.529 6.529 16 C 0.076 3.924 17 H 0.084 0.916 18 C -0.154 4.154 19 C -0.121 4.121 20 C -0.158 4.158 21 C 0.059 3.941 22 O -0.355 6.355 23 C 0.118 3.882 24 C -0.139 4.139 25 H 0.255 0.745 26 H 0.384 0.616 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.612 -17.000 -8.133 21.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.069 3.931 11 C -0.193 4.193 12 C -0.022 4.022 13 N -0.338 5.338 14 C 0.308 3.692 15 O -0.404 6.404 16 C 0.015 3.985 17 H 0.101 0.899 18 C -0.192 4.192 19 C -0.159 4.159 20 C -0.196 4.196 21 C -0.018 4.018 22 O -0.273 6.273 23 C -0.005 4.005 24 C -0.178 4.178 25 H 0.065 0.935 26 H 0.218 0.782 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.254 -17.404 -7.656 21.146 hybrid contribution 0.350 1.267 -0.371 1.366 sum 9.604 -16.138 -8.027 20.423 Atomic orbital electron populations 1.69659 1.05142 1.25720 1.57465 1.24752 0.95492 0.97719 1.02914 0.86208 0.78667 0.83909 0.77499 1.21734 1.21782 1.20746 1.19230 0.90959 0.84090 1.42946 0.91156 1.42444 1.05832 0.99694 1.88485 1.20161 0.94494 0.86116 0.92361 1.22703 1.00071 0.94624 1.01942 1.22073 0.94759 0.89021 0.96360 1.48063 1.54314 1.14287 1.17124 1.20067 0.80037 0.81808 0.87268 1.90689 1.39336 1.46243 1.64168 1.21867 0.94179 0.88011 0.94487 0.89856 1.22340 0.94074 1.04006 0.98734 1.21596 1.00895 0.97324 0.96067 1.22218 0.96614 0.98412 1.02350 1.22656 0.94168 1.00959 0.84048 1.88058 1.72840 1.35070 1.31310 1.21623 0.98809 0.98062 0.81976 1.22214 0.99234 0.94071 1.02310 0.93462 0.78236 0.93355 0.92131 0.90540 0.91190 0.90251 0.89322 0.90433 0.91384 0.90921 0.90709 0.90899 0.92970 0.88440 0.91448 0.89298 0.90452 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.74 13.06 55.49 0.72 -27.01 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -17.52 5.12 -53.38 -0.27 -17.79 16 10 C 0.18 3.33 2.73 -67.89 -0.19 3.15 16 11 C -0.15 -2.44 5.66 -26.61 -0.15 -2.60 16 12 C 0.10 1.24 5.02 -3.71 -0.02 1.22 16 13 N -0.60 -8.46 2.97 -172.76 -0.51 -8.98 16 14 C 0.52 8.00 7.12 -10.98 -0.08 7.93 16 15 O -0.53 -10.15 15.92 -14.30 -0.23 -10.37 16 16 C 0.08 0.92 2.22 -27.84 -0.06 0.86 16 17 H 0.08 0.92 7.44 -51.93 -0.39 0.53 16 18 C -0.15 -1.44 4.99 -26.59 -0.13 -1.58 16 19 C -0.12 -0.89 6.03 -26.55 -0.16 -1.05 16 20 C -0.16 -1.17 6.14 -26.59 -0.16 -1.33 16 21 C 0.06 0.53 6.84 37.20 0.25 0.78 16 22 O -0.35 -4.78 9.94 -55.08 -0.55 -5.33 16 23 C 0.12 1.70 6.43 -3.71 -0.02 1.67 16 24 C -0.14 -2.29 5.55 -26.61 -0.15 -2.43 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.38 10.04 7.80 -40.82 -0.32 9.72 16 27 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.80 4.62 -51.93 -0.24 0.56 16 32 H 0.09 0.74 5.43 -51.93 -0.28 0.46 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.09 1.35 7.01 -51.92 -0.36 0.98 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -32.59 334.41 -8.99 -41.58 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -7.05 Total: 6.45 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.11 Total: -0.42 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.06 Total: -53.78 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.78 Total: -15.71 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.59 -8.99 -41.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991098978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.941 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds