Wall clock time and date at job start Tue Mar 31 2020 06:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00389 * 2 1 4 4 H 1.48495 * 109.47250 * 269.99867 * 3 2 1 5 5 H 1.48505 * 109.47013 * 149.99428 * 3 2 1 6 6 H 1.48503 * 109.46886 * 30.00188 * 3 2 1 7 7 C 1.38818 * 119.99550 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99698 * 154.90699 * 7 2 1 9 9 N 1.36933 * 120.00073 * 334.91106 * 7 2 1 10 10 C 1.46925 * 120.63250 * 332.40159 * 9 7 2 11 11 C 1.53189 * 108.77489 * 233.58481 * 10 9 7 12 12 C 1.53043 * 109.31497 * 305.36212 * 11 10 9 13 13 C 1.53047 * 109.53579 * 61.36650 * 12 11 10 14 14 H 1.09000 * 109.49678 * 58.61433 * 13 12 11 15 15 N 1.46492 * 109.49867 * 178.68500 * 13 12 11 16 16 C 1.34778 * 119.99982 * 205.00029 * 15 13 12 17 17 O 1.21281 * 120.00229 * 359.97438 * 16 15 13 18 18 C 1.50700 * 119.99898 * 179.97438 * 16 15 13 19 19 C 1.53188 * 109.54495 * 299.55522 * 18 16 15 20 20 C 1.53094 * 109.16193 * 183.15518 * 19 18 16 21 21 O 1.42899 * 109.41779 * 57.60672 * 20 19 18 22 22 C 1.42902 * 114.09850 * 298.84190 * 21 20 19 23 23 C 1.53098 * 109.41434 * 61.15728 * 22 21 20 24 24 C 1.46931 * 120.62969 * 152.12143 * 9 7 2 25 25 H 0.97004 * 120.00436 * 174.25592 * 1 2 3 26 26 H 1.08997 * 109.58446 * 353.37125 * 10 9 7 27 27 H 1.09003 * 109.58796 * 113.65574 * 10 9 7 28 28 H 1.08997 * 109.49818 * 65.31447 * 11 10 9 29 29 H 1.09002 * 109.50144 * 185.38118 * 11 10 9 30 30 H 1.09005 * 109.46005 * 181.38240 * 12 11 10 31 31 H 1.08999 * 109.46046 * 301.36171 * 12 11 10 32 32 H 0.97006 * 120.00210 * 24.99720 * 15 13 12 33 33 H 1.08998 * 109.54343 * 59.82050 * 18 16 15 34 34 H 1.08998 * 109.51756 * 303.05932 * 19 18 16 35 35 H 1.09000 * 109.52055 * 63.24304 * 19 18 16 36 36 H 1.09002 * 109.47863 * 297.62292 * 20 19 18 37 37 H 1.09002 * 109.48570 * 177.59701 * 20 19 18 38 38 H 1.08994 * 109.48031 * 301.17658 * 22 21 20 39 39 H 1.09000 * 109.49303 * 181.14482 * 22 21 20 40 40 H 1.09003 * 109.51953 * 182.48465 * 23 22 21 41 41 H 1.09001 * 109.57336 * 62.33033 * 23 22 21 42 42 H 1.09000 * 109.58814 * 246.20201 * 24 9 7 43 43 H 1.09000 * 109.58530 * 6.62388 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 3.5478 1.4400 0.7002 6 1 1.4477 2.6526 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 3.0137 -1.2466 -0.3961 9 7 1.4223 -2.3319 0.5039 10 6 0.3916 -2.2384 1.5467 11 6 0.7998 -3.1284 2.7247 12 6 1.0559 -4.5503 2.2199 13 6 2.2024 -4.5348 1.2062 14 1 3.0980 -4.1285 1.6762 15 7 2.4676 -5.9004 0.7471 16 6 3.6872 -6.2282 0.2764 17 8 4.5650 -5.3925 0.2325 18 6 3.9602 -7.6332 -0.1954 19 6 3.7452 -8.6133 0.9621 20 6 4.1006 -10.0275 0.4956 21 8 5.4521 -10.0493 0.0321 22 6 5.7014 -9.1873 -1.0801 23 6 5.4104 -7.7393 -0.6770 24 6 1.8060 -3.6604 0.0070 25 1 -0.4851 -0.8358 -0.0841 26 1 0.3043 -1.2051 1.8825 27 1 -0.5649 -2.5745 1.1463 28 1 1.7085 -2.7349 3.1802 29 1 -0.0008 -3.1432 3.4643 30 1 1.3227 -5.1914 3.0602 31 1 0.1543 -4.9340 1.7423 32 1 1.7654 -6.5688 0.7819 33 1 3.2849 -7.8804 -1.0145 34 1 4.3851 -8.3343 1.7992 35 1 2.7014 -8.5843 1.2748 36 1 3.4335 -10.3213 -0.3148 37 1 3.9903 -10.7232 1.3275 38 1 5.0553 -9.4701 -1.9111 39 1 6.7444 -9.2775 -1.3836 40 1 5.5575 -7.0853 -1.5366 41 1 6.0839 -7.4416 0.1267 42 1 0.9631 -4.1125 -0.5156 43 1 2.6522 -3.5656 -0.6735 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006534770.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:38 Heat of formation + Delta-G solvation = -80.127915 kcal Electronic energy + Delta-G solvation = -23048.731214 eV Core-core repulsion = 19707.589397 eV Total energy + Delta-G solvation = -3341.141817 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.37912 -38.86498 -37.46163 -34.52901 -33.89949 -32.49032 -31.33798 -30.42188 -28.79943 -25.94692 -25.10308 -23.79516 -22.53001 -22.01933 -20.91260 -19.98015 -19.27438 -17.39798 -17.29484 -16.34371 -16.17397 -15.65378 -15.20941 -14.90787 -14.30964 -14.24760 -14.02219 -13.84807 -13.54205 -13.39112 -13.06298 -12.73851 -12.61967 -12.31031 -12.02414 -11.74224 -11.58908 -11.18999 -10.99402 -10.74070 -10.71316 -10.69451 -10.38343 -10.12627 -10.06696 -9.99409 -9.98202 -9.45608 -9.31006 -8.90510 -8.29438 -6.88260 -6.06102 -3.21880 2.77263 3.27189 3.52739 3.56821 3.60907 3.72774 4.37676 4.48396 4.54079 4.63175 4.72422 4.91229 5.04198 5.16381 5.17435 5.27683 5.31829 5.33058 5.37797 5.38606 5.54579 5.58344 5.59214 5.72910 5.85654 5.93449 6.02602 6.08218 6.10816 6.36366 6.42001 6.54465 6.58436 6.69493 6.87504 6.89424 7.05441 7.16969 7.68742 8.04827 8.40914 8.59242 9.11885 9.85935 10.28117 11.22507 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029171 B = 0.003764 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.615039 B = 7436.309643 C = 8095.718734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.024 4.024 3 Si 1.066 2.934 4 H -0.294 1.294 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.348 4.348 8 H 0.057 0.943 9 N -0.595 5.595 10 C 0.147 3.853 11 C -0.134 4.134 12 C -0.114 4.114 13 C 0.126 3.874 14 H 0.086 0.914 15 N -0.723 5.723 16 C 0.514 3.486 17 O -0.533 6.533 18 C -0.110 4.110 19 C -0.147 4.147 20 C 0.063 3.937 21 O -0.384 6.384 22 C 0.061 3.939 23 C -0.136 4.136 24 C 0.145 3.855 25 H 0.268 0.732 26 H 0.082 0.918 27 H 0.017 0.983 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.393 0.607 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.051 0.949 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.015 0.985 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.220 -20.105 1.959 20.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.225 4.225 3 Si 0.895 3.105 4 H -0.221 1.221 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.477 4.477 8 H 0.075 0.925 9 N -0.319 5.319 10 C 0.021 3.979 11 C -0.174 4.174 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.104 0.896 15 N -0.373 5.373 16 C 0.299 3.701 17 O -0.409 6.409 18 C -0.131 4.131 19 C -0.185 4.185 20 C -0.014 4.014 21 O -0.302 6.302 22 C -0.016 4.016 23 C -0.174 4.174 24 C 0.017 3.983 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.227 0.773 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.114 0.886 38 H 0.069 0.931 39 H 0.115 0.885 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.033 0.967 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.849 -17.902 2.074 18.663 hybrid contribution -0.507 -1.827 -0.265 1.914 sum 4.342 -19.729 1.809 20.282 Atomic orbital electron populations 1.70763 1.06592 1.30230 1.48179 1.25852 0.96491 1.01425 0.98755 0.83537 0.74753 0.75733 0.76450 1.22142 1.21808 1.21156 1.20023 0.97667 0.88331 1.41671 0.92535 1.44079 1.45923 1.00968 1.40919 1.21005 0.90299 0.99353 0.87237 1.22054 1.01121 0.94748 0.99448 1.21670 0.97588 0.98373 0.97632 1.21798 0.98773 0.80627 0.96786 0.89578 1.46144 1.12792 1.13241 1.65145 1.20453 0.82414 0.89671 0.77521 1.90737 1.44815 1.51244 1.54102 1.21386 0.99460 0.92945 0.99332 1.22197 1.02841 0.95325 0.98116 1.22567 0.83717 0.95916 0.99189 1.87938 1.28038 1.64483 1.49789 1.22644 1.01870 0.88829 0.88225 1.22019 0.94983 0.97149 1.03287 1.21260 0.97539 0.86419 0.93049 0.92112 0.90011 0.96496 0.92050 0.92488 0.92847 0.92296 0.77347 0.88587 0.90346 0.90329 0.92953 0.88584 0.93089 0.88491 0.89980 0.90077 0.96741 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.63 12.40 55.49 0.69 -26.94 16 2 C -0.02 -0.68 4.68 -17.43 -0.08 -0.76 16 3 Si 1.07 25.84 29.99 -169.99 -5.10 20.74 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.35 -10.05 9.49 -15.06 -0.14 -10.19 16 8 H 0.06 1.68 7.94 -52.49 -0.42 1.27 16 9 N -0.60 -15.25 2.85 -172.05 -0.49 -15.74 16 10 C 0.15 3.41 4.69 -3.71 -0.02 3.39 16 11 C -0.13 -2.46 6.08 -26.61 -0.16 -2.62 16 12 C -0.11 -1.81 5.35 -26.68 -0.14 -1.95 16 13 C 0.13 2.25 2.62 -67.59 -0.18 2.08 16 14 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 15 N -0.72 -10.12 4.99 -53.47 -0.27 -10.38 16 16 C 0.51 7.69 7.13 -10.98 -0.08 7.61 16 17 O -0.53 -10.56 15.63 5.56 0.09 -10.47 16 18 C -0.11 -1.16 2.61 -91.58 -0.24 -1.40 16 19 C -0.15 -1.25 5.30 -26.59 -0.14 -1.39 16 20 C 0.06 0.48 6.84 37.21 0.25 0.74 16 21 O -0.38 -3.90 10.77 -35.23 -0.38 -4.28 16 22 C 0.06 0.54 6.84 37.21 0.25 0.79 16 23 C -0.14 -1.48 4.74 -26.59 -0.13 -1.61 16 24 C 0.14 3.20 6.12 -3.48 -0.02 3.17 16 25 H 0.27 8.10 6.71 -40.82 -0.27 7.83 16 26 H 0.08 2.14 6.29 -51.93 -0.33 1.81 16 27 H 0.02 0.40 7.86 -51.93 -0.41 -0.01 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.39 4.14 8.12 -40.82 -0.33 3.81 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.52 7.70 -51.93 -0.40 0.12 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.08 1.02 8.02 -51.93 -0.42 0.61 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 1.42 7.93 -51.93 -0.41 1.01 16 LS Contribution 336.31 15.07 5.07 5.07 Total: -1.00 -33.76 336.31 -8.46 -42.22 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.25 Total: 1.92 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -0.82 Total: -2.13 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.07 Total: -53.07 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.29 Total: -14.75 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.10 Total: 20.74 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.76 -8.46 -42.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006534770.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.910 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds