Wall clock time and date at job start Tue Mar 31 2020 06:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00079 * 2 1 4 4 H 1.48498 * 109.47119 * 274.06905 * 3 2 1 5 5 H 1.48499 * 109.47078 * 34.06941 * 3 2 1 6 6 H 1.48495 * 109.47062 * 154.06835 * 3 2 1 7 7 C 1.38813 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00209 * 197.52079 * 7 2 1 9 9 N 1.36935 * 120.00411 * 17.52575 * 7 2 1 10 10 C 1.46929 * 120.62857 * 28.01618 * 9 7 2 11 11 C 1.53197 * 108.77483 * 126.37007 * 10 9 7 12 12 C 1.53036 * 109.31025 * 54.63739 * 11 10 9 13 13 C 1.53036 * 109.54036 * 298.63323 * 12 11 10 14 14 H 1.09003 * 109.52850 * 301.40145 * 13 12 11 15 15 N 1.46502 * 109.50376 * 181.31654 * 13 12 11 16 16 C 1.34774 * 120.00351 * 155.16015 * 15 13 12 17 17 O 1.21278 * 119.99610 * 0.02562 * 16 15 13 18 18 C 1.50695 * 119.99884 * 180.02562 * 16 15 13 19 19 C 1.53001 * 109.46849 * 180.02562 * 18 16 15 20 20 H 1.08996 * 110.55800 * 56.42509 * 19 18 16 21 21 C 1.55001 * 110.61664 * 179.47566 * 19 18 16 22 22 C 1.54815 * 102.09162 * 155.51970 * 21 19 18 23 23 C 1.54096 * 104.18996 * 339.12238 * 22 21 19 24 24 O 1.43749 * 107.29417 * 357.96701 * 23 22 21 25 25 C 1.46918 * 120.63479 * 207.99778 * 9 7 2 26 26 H 0.96998 * 120.00154 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.59058 * 246.15598 * 10 9 7 28 28 H 1.09003 * 109.58956 * 6.44703 * 10 9 7 29 29 H 1.09003 * 109.49720 * 174.58884 * 11 10 9 30 30 H 1.09003 * 109.49949 * 294.68411 * 11 10 9 31 31 H 1.09001 * 109.46101 * 178.61418 * 12 11 10 32 32 H 1.09001 * 109.46432 * 58.65369 * 12 11 10 33 33 H 0.97001 * 119.99724 * 335.16516 * 15 13 12 34 34 H 1.09001 * 109.47077 * 60.00354 * 18 16 15 35 35 H 1.09003 * 109.47079 * 299.99820 * 18 16 15 36 36 H 1.08997 * 110.90593 * 37.32799 * 21 19 18 37 37 H 1.09000 * 110.90611 * 273.71871 * 21 19 18 38 38 H 1.08999 * 110.49004 * 220.43929 * 22 21 19 39 39 H 1.09002 * 110.48335 * 97.79383 * 22 21 19 40 40 H 1.09000 * 109.88453 * 117.38733 * 23 22 21 41 41 H 1.08996 * 109.88034 * 238.39681 * 23 22 21 42 42 H 1.08998 * 109.59165 * 113.84155 * 25 9 7 43 43 H 1.09002 * 109.70466 * 353.48164 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4117 2.0960 -1.3965 5 1 1.4934 2.6262 0.7843 6 1 3.5881 1.4168 0.6122 7 6 2.0103 -1.2022 0.0005 8 1 3.0527 -1.2238 0.2821 9 7 1.3733 -2.3607 -0.3560 10 6 0.2358 -2.3340 -1.2856 11 6 0.5163 -3.3058 -2.4362 12 6 0.8282 -4.6906 -1.8643 13 6 2.0773 -4.6113 -0.9837 14 1 2.9165 -4.2432 -1.5740 15 7 2.3934 -5.9432 -0.4620 16 6 3.6567 -6.2433 -0.1008 17 8 4.5318 -5.4104 -0.2073 18 6 3.9818 -7.6136 0.4353 19 6 5.4733 -7.6906 0.7674 20 1 5.7499 -6.9050 1.4705 21 6 5.8349 -9.0872 1.3342 22 6 7.3433 -9.1915 1.0020 23 6 7.5511 -8.1721 -0.1348 24 8 6.2673 -7.5993 -0.4351 25 6 1.8145 -3.6542 0.1833 26 1 -0.4850 0.8400 0.0004 27 1 -0.6707 -2.6388 -0.7628 28 1 0.1091 -1.3254 -1.6792 29 1 -0.3597 -3.3677 -3.0819 30 1 1.3698 -2.9498 -3.0133 31 1 1.0041 -5.3899 -2.6818 32 1 -0.0158 -5.0354 -1.2670 33 1 1.6933 -6.6093 -0.3766 34 1 3.7371 -8.3649 -0.3156 35 1 3.3990 -7.7984 1.3377 36 1 5.2702 -9.8703 0.8284 37 1 5.6702 -9.1244 2.4111 38 1 7.5906 -10.1973 0.6625 39 1 7.9447 -8.9223 1.8703 40 1 8.2388 -7.3909 0.1889 41 1 7.9500 -8.6753 -1.0155 42 1 1.0368 -4.0666 0.8260 43 1 2.7305 -3.5193 0.7585 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006780650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:50 Heat of formation + Delta-G solvation = -71.974958 kcal Electronic energy + Delta-G solvation = -22764.982543 eV Core-core repulsion = 19424.194265 eV Total energy + Delta-G solvation = -3340.788278 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.98143 -38.94035 -37.20080 -34.18897 -32.61467 -32.25599 -31.73562 -30.41073 -28.75090 -26.53091 -25.23427 -22.66724 -22.06295 -21.68595 -21.19263 -19.96338 -19.22651 -17.08435 -16.73472 -16.41211 -16.05241 -15.55890 -15.17346 -14.71126 -14.50931 -14.04029 -13.77497 -13.43326 -13.39768 -13.07979 -12.61068 -12.39201 -12.32248 -12.09047 -11.94597 -11.80420 -11.38832 -11.31098 -11.03341 -10.90814 -10.82608 -10.75316 -10.21340 -10.16903 -9.86701 -9.84848 -9.68368 -9.56764 -9.33438 -8.71479 -8.34281 -6.62426 -5.74248 -3.16181 2.99771 3.43094 3.44292 3.49968 3.53581 3.75599 4.33124 4.49919 4.57372 4.71480 4.90673 4.92854 5.06053 5.26634 5.31342 5.35481 5.42871 5.48151 5.51631 5.57941 5.60613 5.66674 5.69234 5.78715 5.79961 5.93519 6.15035 6.23083 6.30014 6.58558 6.66076 6.75225 6.77190 6.86617 6.90424 7.08012 7.39908 7.68286 7.87440 7.88056 8.49605 8.62426 9.26769 9.89211 10.45145 11.34519 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023620 B = 0.003723 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.161724 B = 7518.108023 C = 8269.007481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.249 4.249 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.126 3.874 14 H 0.085 0.915 15 N -0.727 5.727 16 C 0.509 3.491 17 O -0.524 6.524 18 C -0.136 4.136 19 C 0.093 3.907 20 H 0.078 0.922 21 C -0.152 4.152 22 C -0.156 4.156 23 C 0.045 3.955 24 O -0.360 6.360 25 C 0.143 3.857 26 H 0.253 0.747 27 H 0.018 0.982 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.393 0.607 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.016 0.984 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.899 -20.553 0.542 21.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.042 3.958 11 C -0.180 4.180 12 C -0.152 4.152 13 C 0.021 3.979 14 H 0.103 0.897 15 N -0.378 5.378 16 C 0.294 3.706 17 O -0.400 6.400 18 C -0.176 4.176 19 C 0.035 3.965 20 H 0.096 0.904 21 C -0.190 4.190 22 C -0.194 4.194 23 C -0.032 4.032 24 O -0.279 6.279 25 C 0.016 3.984 26 H 0.063 0.937 27 H 0.037 0.963 28 H 0.106 0.894 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.226 0.774 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.034 0.966 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.381 -19.676 0.281 21.017 hybrid contribution 0.090 0.350 0.249 0.438 sum 7.471 -19.327 0.530 20.727 Atomic orbital electron populations 1.70048 1.05234 1.25419 1.54215 1.25023 0.95294 0.98386 1.00957 0.86254 0.79252 0.83583 0.77627 1.21444 1.21818 1.20312 1.19258 0.92888 0.84747 1.40996 0.91553 1.43999 1.36222 1.01139 1.49735 1.20831 0.88665 0.98503 0.87824 1.22178 1.00423 0.95283 1.00068 1.21667 0.96856 0.98482 0.98216 1.21700 0.97740 0.81532 0.96960 0.89737 1.46152 1.09480 1.15764 1.66427 1.20408 0.82608 0.89385 0.78226 1.90755 1.46433 1.49862 1.52907 1.21753 0.96132 0.96454 1.03299 1.22839 0.90230 0.95905 0.87502 0.90368 1.23204 0.96029 0.97797 1.01932 1.22933 0.96726 1.00410 0.99303 1.23112 0.87076 0.95125 0.97921 1.89005 1.24162 1.81875 1.32830 1.21174 0.97778 0.86776 0.92704 0.93716 0.96349 0.89351 0.92778 0.92440 0.93166 0.92329 0.77429 0.88412 0.87701 0.90374 0.90057 0.90620 0.90709 0.92464 0.90154 0.96628 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 11.22 55.49 0.62 -26.09 16 2 C 0.00 0.05 4.90 -17.43 -0.09 -0.04 16 3 Si 0.90 22.47 29.59 -169.99 -5.03 17.44 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.25 -7.18 9.58 -15.06 -0.14 -7.33 16 8 H 0.07 1.93 7.89 -52.49 -0.41 1.52 16 9 N -0.59 -15.36 2.99 -172.32 -0.52 -15.87 16 10 C 0.17 4.04 5.31 -3.71 -0.02 4.02 16 11 C -0.14 -2.68 6.08 -26.61 -0.16 -2.85 16 12 C -0.11 -1.90 5.35 -26.69 -0.14 -2.04 16 13 C 0.13 2.35 2.60 -67.81 -0.18 2.18 16 14 H 0.08 1.84 7.58 -51.93 -0.39 1.45 16 15 N -0.73 -10.69 5.08 -53.69 -0.27 -10.97 16 16 C 0.51 7.99 7.70 -10.99 -0.08 7.91 16 17 O -0.52 -10.91 15.23 -5.82 -0.09 -11.00 16 18 C -0.14 -1.45 5.48 -27.88 -0.15 -1.60 16 19 C 0.09 1.08 2.80 -25.67 -0.07 1.01 16 20 H 0.08 1.01 8.03 -51.93 -0.42 0.60 16 21 C -0.15 -1.19 6.59 -24.72 -0.16 -1.35 16 22 C -0.16 -1.18 7.01 -25.20 -0.18 -1.36 16 23 C 0.04 0.46 7.70 37.73 0.29 0.75 16 24 O -0.36 -5.10 10.62 -46.62 -0.49 -5.60 16 25 C 0.14 3.22 6.09 -3.71 -0.02 3.20 16 26 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.39 4.33 8.60 -40.82 -0.35 3.98 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.54 8.06 -51.93 -0.42 0.12 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 1.38 7.94 -51.93 -0.41 0.96 16 LS Contribution 341.56 15.07 5.15 5.15 Total: -1.00 -34.33 341.56 -9.10 -43.42 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -7.35 Total: 1.02 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -1.11 Total: 2.49 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.17 Total: -52.93 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.58 Total: -16.60 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.33 -9.10 -43.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006780650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.551 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds