Wall clock time and date at job start Tue Mar 31 2020 06:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00065 * 2 1 4 4 H 1.48499 * 109.47158 * 274.06625 * 3 2 1 5 5 H 1.48505 * 109.46745 * 34.06753 * 3 2 1 6 6 H 1.48497 * 109.47106 * 154.06499 * 3 2 1 7 7 C 1.38815 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99817 * 197.52422 * 7 2 1 9 9 N 1.36935 * 119.99750 * 17.52765 * 7 2 1 10 10 C 1.46920 * 120.63281 * 28.01880 * 9 7 2 11 11 C 1.53190 * 108.77655 * 126.37225 * 10 9 7 12 12 C 1.53043 * 109.31311 * 54.63269 * 11 10 9 13 13 C 1.53036 * 109.53881 * 298.63810 * 12 11 10 14 14 H 1.09004 * 109.52902 * 301.39710 * 13 12 11 15 15 N 1.46499 * 109.49952 * 181.31383 * 13 12 11 16 16 C 1.34774 * 120.00223 * 155.16128 * 15 13 12 17 17 O 1.21288 * 119.99979 * 359.97438 * 16 15 13 18 18 C 1.50698 * 120.00248 * 180.02562 * 16 15 13 19 19 C 1.53007 * 109.47227 * 179.97438 * 18 16 15 20 20 H 1.08992 * 110.41753 * 307.30858 * 19 18 16 21 21 C 1.54480 * 110.37297 * 184.99895 * 19 18 16 22 22 C 1.54508 * 104.18367 * 217.26027 * 21 19 18 23 23 C 1.54481 * 104.06457 * 359.92938 * 22 21 19 24 24 O 1.44424 * 104.79922 * 23.98313 * 23 22 21 25 25 C 1.46928 * 120.62805 * 207.99851 * 9 7 2 26 26 H 0.97002 * 119.99877 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.58636 * 246.15755 * 10 9 7 28 28 H 1.08997 * 109.58668 * 6.44241 * 10 9 7 29 29 H 1.08993 * 109.50268 * 174.58698 * 11 10 9 30 30 H 1.09000 * 109.49889 * 294.65421 * 11 10 9 31 31 H 1.08995 * 109.46259 * 178.61530 * 12 11 10 32 32 H 1.09008 * 109.45959 * 58.65690 * 12 11 10 33 33 H 0.97002 * 120.00305 * 335.16578 * 15 13 12 34 34 H 1.08996 * 109.47341 * 60.00021 * 18 16 15 35 35 H 1.09000 * 109.47099 * 299.99414 * 18 16 15 36 36 H 1.08994 * 110.51356 * 98.54522 * 21 19 18 37 37 H 1.09000 * 110.50837 * 335.97128 * 21 19 18 38 38 H 1.09005 * 110.51306 * 118.57404 * 22 21 19 39 39 H 1.09001 * 110.51133 * 241.28372 * 22 21 19 40 40 H 1.09001 * 110.37188 * 142.80590 * 23 22 21 41 41 H 1.08990 * 110.37534 * 265.03895 * 23 22 21 42 42 H 1.09001 * 109.58541 * 113.83515 * 25 9 7 43 43 H 1.09004 * 109.70105 * 353.48800 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4118 2.0961 -1.3965 5 1 1.4932 2.6263 0.7843 6 1 3.5881 1.4169 0.6123 7 6 2.0102 -1.2022 -0.0005 8 1 3.0527 -1.2240 0.2811 9 7 1.3732 -2.3603 -0.3582 10 6 0.2358 -2.3327 -1.2878 11 6 0.5163 -3.3035 -2.4391 12 6 0.8282 -4.6889 -1.8685 13 6 2.0773 -4.6103 -0.9878 14 1 2.9165 -4.2418 -1.5777 15 7 2.3932 -5.9427 -0.4672 16 6 3.6565 -6.2431 -0.1063 17 8 4.5319 -5.4104 -0.2128 18 6 3.9816 -7.6139 0.4287 19 6 5.4735 -7.6917 0.7596 20 1 6.0700 -7.3828 -0.0987 21 6 5.8546 -9.1251 1.1915 22 6 6.8983 -8.9180 2.3117 23 6 7.0278 -7.3829 2.4252 24 8 5.7813 -6.8683 1.9083 25 6 1.8144 -3.6543 0.1800 26 1 -0.4850 0.8401 -0.0004 27 1 -0.6708 -2.6379 -0.7651 28 1 0.1091 -1.3238 -1.6804 29 1 -0.3596 -3.3649 -3.0849 30 1 1.3694 -2.9468 -3.0162 31 1 1.0040 -5.3875 -2.6865 32 1 -0.0160 -5.0342 -1.2714 33 1 1.6932 -6.6089 -0.3824 34 1 3.7370 -8.3646 -0.3228 35 1 3.3989 -7.7995 1.3309 36 1 6.2935 -9.6715 0.3568 37 1 4.9817 -9.6530 1.5756 38 1 6.5404 -9.3415 3.2503 39 1 7.8533 -9.3622 2.0308 40 1 7.1569 -7.0889 3.4668 41 1 7.8651 -7.0273 1.8248 42 1 1.0367 -4.0672 0.8225 43 1 2.7304 -3.5199 0.7555 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006780651.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:53 Heat of formation + Delta-G solvation = -71.635511 kcal Electronic energy + Delta-G solvation = -22805.632783 eV Core-core repulsion = 19464.859224 eV Total energy + Delta-G solvation = -3340.773559 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.97330 -38.91999 -37.19835 -34.19049 -32.61143 -32.24362 -31.69281 -30.39774 -28.73905 -26.47342 -25.22288 -22.77065 -22.06316 -21.74363 -21.02205 -19.99729 -19.23291 -17.08372 -16.71631 -16.15866 -16.03621 -15.73425 -15.21007 -14.62917 -14.52706 -13.96635 -13.86798 -13.49179 -13.39776 -13.08169 -12.48961 -12.37069 -12.33158 -12.07054 -11.93441 -11.79891 -11.37316 -11.27348 -11.02400 -10.84655 -10.82168 -10.74574 -10.20937 -10.16235 -9.85721 -9.84003 -9.77296 -9.56240 -9.34009 -8.71675 -8.33278 -6.60959 -5.72722 -3.14549 2.98309 3.44104 3.44826 3.50944 3.54864 3.79859 4.37293 4.51302 4.58578 4.73428 4.91160 4.92806 5.09015 5.26068 5.32266 5.35537 5.43964 5.50336 5.51763 5.58802 5.61237 5.68073 5.68938 5.78668 5.79731 5.92539 6.14717 6.22823 6.30112 6.58137 6.66056 6.75865 6.78145 6.81403 6.91979 7.09529 7.40362 7.68988 7.86689 7.89865 8.50945 8.61439 9.28464 9.90782 10.46729 11.36083 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021519 B = 0.003937 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.838899 B = 7109.512610 C = 8132.645147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.249 4.249 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.126 3.874 14 H 0.084 0.916 15 N -0.727 5.727 16 C 0.509 3.491 17 O -0.526 6.526 18 C -0.137 4.137 19 C 0.091 3.909 20 H 0.077 0.923 21 C -0.152 4.152 22 C -0.155 4.155 23 C 0.043 3.957 24 O -0.356 6.356 25 C 0.143 3.857 26 H 0.253 0.747 27 H 0.018 0.982 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.393 0.607 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.016 0.984 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.097 -20.769 -0.186 21.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.042 3.958 11 C -0.179 4.179 12 C -0.152 4.152 13 C 0.021 3.979 14 H 0.102 0.898 15 N -0.378 5.378 16 C 0.294 3.706 17 O -0.401 6.401 18 C -0.177 4.177 19 C 0.033 3.967 20 H 0.095 0.905 21 C -0.190 4.190 22 C -0.193 4.193 23 C -0.035 4.035 24 O -0.275 6.275 25 C 0.015 3.985 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.226 0.774 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.512 -19.804 -0.156 21.182 hybrid contribution 0.103 0.270 0.017 0.290 sum 7.616 -19.534 -0.139 20.966 Atomic orbital electron populations 1.70050 1.05234 1.25393 1.54271 1.25021 0.95286 0.98376 1.00973 0.86257 0.79294 0.83607 0.77595 1.21468 1.21814 1.20289 1.19269 0.92914 0.84755 1.40902 0.91520 1.44005 1.36208 1.01147 1.49732 1.20827 0.88693 0.98499 0.87815 1.22175 1.00401 0.95282 1.00078 1.21670 0.96895 0.98472 0.98173 1.21694 0.97678 0.81545 0.96976 0.89774 1.46153 1.09510 1.15752 1.66364 1.20430 0.82736 0.89551 0.77906 1.90753 1.46676 1.49890 1.52827 1.21770 0.96769 0.96112 1.03022 1.22730 0.94695 0.88765 0.90532 0.90530 1.23020 0.99651 0.97472 0.98875 1.22943 0.99581 0.97356 0.99418 1.23372 0.87988 0.92149 0.99942 1.89307 1.38816 1.55546 1.43840 1.21183 0.97913 0.86731 0.92683 0.93736 0.96364 0.89349 0.92787 0.92460 0.93199 0.92312 0.77409 0.87907 0.88178 0.90485 0.90510 0.90741 0.90704 0.89237 0.92362 0.96622 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 11.22 55.49 0.62 -26.26 16 2 C 0.00 0.05 4.90 -17.43 -0.09 -0.04 16 3 Si 0.90 22.61 29.59 -169.99 -5.03 17.58 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.25 -7.23 9.58 -15.06 -0.14 -7.38 16 8 H 0.07 1.97 7.89 -52.49 -0.41 1.55 16 9 N -0.59 -15.49 2.99 -172.32 -0.52 -16.01 16 10 C 0.17 4.06 5.31 -3.72 -0.02 4.04 16 11 C -0.14 -2.67 6.08 -26.61 -0.16 -2.83 16 12 C -0.11 -1.88 5.35 -26.69 -0.14 -2.02 16 13 C 0.13 2.36 2.60 -67.81 -0.18 2.18 16 14 H 0.08 1.81 7.58 -51.93 -0.39 1.41 16 15 N -0.73 -10.69 5.08 -53.69 -0.27 -10.96 16 16 C 0.51 7.99 7.73 -10.99 -0.08 7.90 16 17 O -0.53 -10.92 15.28 -0.63 -0.01 -10.93 16 18 C -0.14 -1.46 5.33 -27.88 -0.15 -1.61 16 19 C 0.09 1.06 2.75 -25.95 -0.07 0.99 16 20 H 0.08 0.97 7.90 -51.93 -0.41 0.56 16 21 C -0.15 -1.20 6.62 -25.16 -0.17 -1.37 16 22 C -0.16 -1.20 7.09 -25.16 -0.18 -1.38 16 23 C 0.04 0.45 7.64 37.93 0.29 0.74 16 24 O -0.36 -5.23 10.94 -41.41 -0.45 -5.68 16 25 C 0.14 3.26 6.09 -3.71 -0.02 3.24 16 26 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 33 H 0.39 4.34 8.60 -40.82 -0.35 3.99 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.52 7.87 -51.93 -0.41 0.11 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 1.46 7.94 -51.93 -0.41 1.04 16 LS Contribution 341.51 15.07 5.15 5.15 Total: -1.00 -34.61 341.51 -8.96 -43.57 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.34 Total: 1.09 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -1.11 Total: 2.45 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.17 Total: -53.23 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.46 Total: -16.61 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.03 Total: 17.58 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.61 -8.96 -43.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006780651.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.068 kcal (2) G-P(sol) polarization free energy of solvation -34.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds