Wall clock time and date at job start Tue Mar 31 2020 06:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48501 * 109.46686 * 90.00075 * 3 2 1 5 5 H 1.48499 * 109.47518 * 210.00078 * 3 2 1 6 6 H 1.48502 * 109.46873 * 330.00238 * 3 2 1 7 7 C 1.38811 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00157 * 162.76785 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 14 14 H 1.08995 * 109.52949 * 58.60193 * 13 12 11 15 15 N 1.46504 * 109.49469 * 178.68188 * 13 12 11 16 16 C 1.34781 * 119.99843 * 204.83297 * 15 13 12 17 17 O 1.21282 * 119.99677 * 0.02562 * 16 15 13 18 18 C 1.50697 * 119.99636 * 179.97438 * 16 15 13 19 19 C 1.53008 * 109.46700 * 180.02562 * 18 16 15 20 20 H 1.08999 * 109.86892 * 54.29884 * 19 18 16 21 21 C 1.54100 * 109.87476 * 175.30924 * 19 18 16 22 22 C 1.54807 * 104.18646 * 121.45654 * 21 19 18 23 23 C 1.54996 * 102.09730 * 20.87467 * 22 21 19 24 24 O 1.43742 * 109.87688 * 293.29327 * 19 18 16 25 25 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 26 26 H 0.96995 * 120.00322 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 28 28 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 29 29 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 30 30 H 1.08998 * 109.38819 * 65.51098 * 11 10 9 31 31 H 1.08998 * 109.46165 * 301.22234 * 12 11 10 32 32 H 1.09004 * 109.46002 * 181.25504 * 12 11 10 33 33 H 0.97000 * 119.99945 * 24.83879 * 15 13 12 34 34 H 1.08998 * 109.47372 * 299.99899 * 18 16 15 35 35 H 1.09000 * 109.47352 * 60.00720 * 18 16 15 36 36 H 1.09000 * 110.48199 * 240.12901 * 21 19 18 37 37 H 1.08997 * 110.49154 * 2.64351 * 21 19 18 38 38 H 1.09002 * 110.91006 * 139.07744 * 22 21 19 39 39 H 1.09009 * 110.90560 * 262.67473 * 22 21 19 40 40 H 1.08999 * 110.61797 * 81.47708 * 23 22 21 41 41 H 1.08997 * 110.62213 * 204.31762 * 23 22 21 42 42 H 1.09004 * 109.58525 * 246.16048 * 25 9 7 43 43 H 1.08999 * 109.58786 * 6.57942 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0463 1.4001 5 1 3.5477 1.4403 -0.7000 6 1 1.4475 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2776 9 7 1.3717 -2.3616 0.3503 10 6 0.2275 -2.3368 1.2716 11 6 0.4938 -3.3061 2.4218 12 6 0.8147 -4.6910 1.8549 13 6 2.0734 -4.6099 0.9881 14 1 2.9052 -4.2396 1.5872 15 7 2.3979 -5.9419 0.4714 16 6 3.6658 -6.2397 0.1245 17 8 4.5381 -5.4051 0.2404 18 6 3.9995 -7.6100 -0.4064 19 6 5.4951 -7.6847 -0.7209 20 1 6.0731 -7.4000 0.1583 21 6 5.8688 -9.1159 -1.1529 22 6 6.4649 -8.9407 -2.5708 23 6 6.8652 -7.4433 -2.5722 24 8 5.8084 -6.8087 -1.8166 25 6 1.8216 -3.6548 -0.1828 26 1 -0.4850 0.8400 0.0004 27 1 0.0986 -1.3293 1.6671 28 1 -0.6750 -2.6418 0.7418 29 1 -0.3892 -3.3692 3.0579 30 1 1.3399 -2.9480 3.0083 31 1 -0.0220 -5.0381 1.2488 32 1 0.9831 -5.3890 2.6751 33 1 1.7002 -6.6094 0.3790 34 1 3.7482 -8.3610 0.3425 35 1 3.4271 -7.7970 -1.3150 36 1 6.6121 -9.5369 -0.4759 37 1 4.9818 -9.7485 -1.1853 38 1 7.3393 -9.5772 -2.7066 39 1 5.7153 -9.1437 -3.3358 40 1 7.8260 -7.3024 -2.0772 41 1 6.8989 -7.0559 -3.5904 42 1 1.0518 -4.0695 -0.8336 43 1 2.7441 -3.5166 -0.7466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006780652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:56 Heat of formation + Delta-G solvation = -71.124748 kcal Electronic energy + Delta-G solvation = -22839.710440 eV Core-core repulsion = 19498.959030 eV Total energy + Delta-G solvation = -3340.751410 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.99997 -38.91537 -37.19334 -34.17713 -32.62714 -32.25933 -31.65676 -30.39881 -28.74176 -26.43723 -25.22005 -22.71856 -22.07415 -21.84183 -21.00056 -19.98893 -19.22763 -17.11145 -16.70968 -16.15433 -15.98839 -15.75175 -15.17734 -14.63793 -14.46451 -13.92619 -13.78855 -13.51781 -13.38667 -13.07018 -12.65797 -12.36840 -12.34014 -12.06229 -11.87606 -11.80174 -11.36011 -11.25954 -11.01579 -10.92057 -10.81151 -10.73980 -10.19831 -10.15906 -9.84584 -9.82825 -9.69864 -9.56170 -9.31180 -8.70071 -8.32606 -6.60605 -5.71999 -3.13757 3.00863 3.45018 3.46667 3.51232 3.55111 3.79517 4.32719 4.52263 4.58887 4.72282 4.86500 4.96134 5.09655 5.24715 5.35563 5.36741 5.44614 5.46435 5.51716 5.56978 5.60849 5.68705 5.69577 5.79159 5.80785 5.95352 6.15592 6.23586 6.30979 6.58847 6.67124 6.77184 6.79253 6.89156 6.93435 7.10375 7.41726 7.69865 7.88668 7.90194 8.51617 8.63860 9.29121 9.91491 10.47143 11.36872 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021553 B = 0.003963 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.804686 B = 7063.886386 C = 8061.160054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.278 1.278 6 H -0.292 1.292 7 C -0.248 4.248 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.126 3.874 14 H 0.084 0.916 15 N -0.727 5.727 16 C 0.508 3.492 17 O -0.524 6.524 18 C -0.141 4.141 19 C 0.092 3.908 20 H 0.075 0.925 21 C -0.153 4.153 22 C -0.155 4.155 23 C 0.042 3.958 24 O -0.355 6.355 25 C 0.143 3.857 26 H 0.253 0.747 27 H 0.089 0.911 28 H 0.018 0.982 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.393 0.607 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.091 0.909 42 H 0.016 0.984 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.865 -20.986 -0.300 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.203 1.203 6 H -0.218 1.218 7 C -0.378 4.378 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.152 4.152 13 C 0.021 3.979 14 H 0.102 0.898 15 N -0.379 5.379 16 C 0.294 3.706 17 O -0.399 6.399 18 C -0.181 4.181 19 C 0.034 3.966 20 H 0.093 0.907 21 C -0.191 4.191 22 C -0.193 4.193 23 C -0.035 4.035 24 O -0.273 6.273 25 C 0.015 3.985 26 H 0.063 0.937 27 H 0.107 0.893 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.225 0.775 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.034 0.966 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.303 -19.993 -0.280 21.287 hybrid contribution 0.061 0.234 -0.029 0.243 sum 7.364 -19.759 -0.309 21.089 Atomic orbital electron populations 1.70041 1.05224 1.25399 1.54340 1.25009 0.95292 0.98349 1.01019 0.86268 0.79211 0.83541 0.77704 1.21442 1.20343 1.21807 1.19266 0.92828 0.84697 1.41009 0.91519 1.43999 1.35541 1.01129 1.50442 1.20743 0.88629 0.98537 0.87941 1.22110 1.00372 0.95298 1.00155 1.21673 0.96831 0.98471 0.98244 1.21690 0.97529 0.81603 0.97070 0.89792 1.46162 1.09271 1.15702 1.66737 1.20434 0.82703 0.89583 0.77912 1.90754 1.47035 1.49706 1.52453 1.21925 0.97211 0.96069 1.02939 1.22441 0.94304 0.88436 0.91425 0.90710 1.23037 1.01790 0.97225 0.97030 1.23131 1.01395 0.97541 0.97238 1.23576 0.91552 0.91270 0.97077 1.89123 1.54362 1.43333 1.40508 1.21185 0.97891 0.86717 0.92696 0.93731 0.89305 0.96416 0.92766 0.92489 0.92323 0.93209 0.77458 0.88119 0.88377 0.90543 0.90281 0.90393 0.90511 0.92332 0.89090 0.96612 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.93 11.19 55.49 0.62 -26.31 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 3 Si 0.90 22.65 29.59 -169.99 -5.03 17.62 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 7 C -0.25 -7.24 9.58 -15.06 -0.14 -7.38 16 8 H 0.07 1.97 7.89 -52.49 -0.41 1.56 16 9 N -0.59 -15.54 3.00 -172.58 -0.52 -16.06 16 10 C 0.17 4.07 5.28 -3.94 -0.02 4.05 16 11 C -0.14 -2.68 6.06 -26.83 -0.16 -2.84 16 12 C -0.11 -1.89 5.36 -26.68 -0.14 -2.04 16 13 C 0.13 2.37 2.60 -67.81 -0.18 2.20 16 14 H 0.08 1.81 7.58 -51.93 -0.39 1.42 16 15 N -0.73 -10.79 5.08 -53.69 -0.27 -11.07 16 16 C 0.51 8.06 7.69 -10.98 -0.08 7.97 16 17 O -0.52 -10.98 15.16 -6.36 -0.10 -11.08 16 18 C -0.14 -1.52 5.19 -27.88 -0.14 -1.66 16 19 C 0.09 1.07 2.93 -26.15 -0.08 1.00 16 20 H 0.07 0.96 7.94 -51.93 -0.41 0.55 16 21 C -0.15 -1.18 6.64 -25.20 -0.17 -1.35 16 22 C -0.16 -1.18 7.16 -24.73 -0.18 -1.35 16 23 C 0.04 0.43 7.72 38.21 0.29 0.73 16 24 O -0.35 -5.21 10.57 -47.14 -0.50 -5.71 16 25 C 0.14 3.28 6.09 -3.71 -0.02 3.25 16 26 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.09 2.41 6.04 -51.93 -0.31 2.10 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.39 4.38 8.60 -40.82 -0.35 4.03 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.49 7.70 -51.93 -0.40 0.09 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 1.46 7.93 -51.93 -0.41 1.05 16 LS Contribution 340.98 15.07 5.14 5.14 Total: -1.00 -34.73 340.98 -9.09 -43.83 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.33 Total: 1.12 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -1.11 Total: 2.52 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.17 Total: -53.43 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.59 Total: -16.79 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.03 Total: 17.62 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.73 -9.09 -43.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006780652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.300 kcal (2) G-P(sol) polarization free energy of solvation -34.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds