Wall clock time and date at job start Tue Mar 31 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48501 * 109.46686 * 90.00075 * 3 2 1 5 5 H 1.48499 * 109.47518 * 210.00078 * 3 2 1 6 6 H 1.48502 * 109.46873 * 330.00238 * 3 2 1 7 7 C 1.38811 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00157 * 162.76785 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 14 14 H 1.08995 * 109.52949 * 58.60193 * 13 12 11 15 15 N 1.46504 * 109.49469 * 178.68188 * 13 12 11 16 16 C 1.34781 * 119.99843 * 204.83297 * 15 13 12 17 17 O 1.21282 * 119.99677 * 0.02562 * 16 15 13 18 18 C 1.50697 * 119.99636 * 179.97438 * 16 15 13 19 19 C 1.53008 * 109.46700 * 180.02562 * 18 16 15 20 20 H 1.08999 * 109.86892 * 54.29884 * 19 18 16 21 21 C 1.54100 * 109.87476 * 175.30924 * 19 18 16 22 22 C 1.54807 * 104.18646 * 121.45654 * 21 19 18 23 23 C 1.54996 * 102.09730 * 20.87467 * 22 21 19 24 24 O 1.43742 * 109.87688 * 293.29327 * 19 18 16 25 25 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 26 26 H 0.96995 * 120.00322 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 28 28 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 29 29 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 30 30 H 1.08998 * 109.38819 * 65.51098 * 11 10 9 31 31 H 1.08998 * 109.46165 * 301.22234 * 12 11 10 32 32 H 1.09004 * 109.46002 * 181.25504 * 12 11 10 33 33 H 0.97000 * 119.99945 * 24.83879 * 15 13 12 34 34 H 1.08998 * 109.47372 * 299.99899 * 18 16 15 35 35 H 1.09000 * 109.47352 * 60.00720 * 18 16 15 36 36 H 1.09000 * 110.48199 * 240.12901 * 21 19 18 37 37 H 1.08997 * 110.49154 * 2.64351 * 21 19 18 38 38 H 1.09002 * 110.91006 * 139.07744 * 22 21 19 39 39 H 1.09009 * 110.90560 * 262.67473 * 22 21 19 40 40 H 1.08999 * 110.61797 * 81.47708 * 23 22 21 41 41 H 1.08997 * 110.62213 * 204.31762 * 23 22 21 42 42 H 1.09004 * 109.58525 * 246.16048 * 25 9 7 43 43 H 1.08999 * 109.58786 * 6.57942 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0463 1.4001 5 1 3.5477 1.4403 -0.7000 6 1 1.4475 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2776 9 7 1.3717 -2.3616 0.3503 10 6 0.2275 -2.3368 1.2716 11 6 0.4938 -3.3061 2.4218 12 6 0.8147 -4.6910 1.8549 13 6 2.0734 -4.6099 0.9881 14 1 2.9052 -4.2396 1.5872 15 7 2.3979 -5.9419 0.4714 16 6 3.6658 -6.2397 0.1245 17 8 4.5381 -5.4051 0.2404 18 6 3.9995 -7.6100 -0.4064 19 6 5.4951 -7.6847 -0.7209 20 1 6.0731 -7.4000 0.1583 21 6 5.8688 -9.1159 -1.1529 22 6 6.4649 -8.9407 -2.5708 23 6 6.8652 -7.4433 -2.5722 24 8 5.8084 -6.8087 -1.8166 25 6 1.8216 -3.6548 -0.1828 26 1 -0.4850 0.8400 0.0004 27 1 0.0986 -1.3293 1.6671 28 1 -0.6750 -2.6418 0.7418 29 1 -0.3892 -3.3692 3.0579 30 1 1.3399 -2.9480 3.0083 31 1 -0.0220 -5.0381 1.2488 32 1 0.9831 -5.3890 2.6751 33 1 1.7002 -6.6094 0.3790 34 1 3.7482 -8.3610 0.3425 35 1 3.4271 -7.7970 -1.3150 36 1 6.6121 -9.5369 -0.4759 37 1 4.9818 -9.7485 -1.1853 38 1 7.3393 -9.5772 -2.7066 39 1 5.7153 -9.1437 -3.3358 40 1 7.8260 -7.3024 -2.0772 41 1 6.8989 -7.0559 -3.5904 42 1 1.0518 -4.0695 -0.8336 43 1 2.7441 -3.5166 -0.7466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006780652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:55 Heat of formation + Delta-G solvation = -95.710822 kcal Electronic energy + Delta-G solvation = -22840.776573 eV Core-core repulsion = 19498.959030 eV Total energy + Delta-G solvation = -3341.817542 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.13707 -40.03694 -38.82985 -35.88927 -34.18024 -33.33408 -32.51844 -32.36235 -30.29770 -27.41201 -27.24298 -23.99519 -23.85088 -22.97436 -21.87385 -21.34041 -20.84446 -18.73876 -18.18533 -17.28902 -17.07072 -16.88416 -16.61134 -16.20901 -15.85265 -15.64300 -15.20737 -14.82463 -14.70880 -14.44210 -14.20482 -14.04274 -13.48664 -13.37331 -13.07924 -12.99163 -12.77207 -12.56090 -12.51117 -12.17705 -12.12513 -11.98691 -11.97496 -11.75908 -11.57255 -11.52715 -11.31927 -10.71117 -10.63281 -10.59827 -10.05001 -8.71660 -7.93050 -5.38759 1.42143 1.43278 1.53306 1.77768 2.24471 2.49619 3.02237 3.20363 3.63270 3.68316 3.80972 3.87268 4.01226 4.07569 4.11565 4.15976 4.26098 4.35123 4.46641 4.52009 4.59144 4.66844 4.77979 4.81094 4.85663 4.91990 4.96138 5.01229 5.01535 5.11897 5.15331 5.19012 5.27354 5.27723 5.48034 5.60585 5.61143 5.74854 6.09103 6.34365 6.71173 7.10569 7.44254 7.80182 8.29802 9.12575 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021553 B = 0.003963 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.804686 B = 7063.886386 C = 8061.160054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.042 4.042 3 Si 0.966 3.034 4 H -0.280 1.280 5 H -0.277 1.277 6 H -0.286 1.286 7 C -0.271 4.271 8 H 0.049 0.951 9 N -0.608 5.608 10 C 0.171 3.829 11 C -0.131 4.131 12 C -0.102 4.102 13 C 0.142 3.858 14 H 0.051 0.949 15 N -0.712 5.712 16 C 0.500 3.500 17 O -0.585 6.585 18 C -0.129 4.129 19 C 0.081 3.919 20 H 0.051 0.949 21 C -0.142 4.142 22 C -0.147 4.147 23 C 0.029 3.971 24 O -0.402 6.402 25 C 0.146 3.854 26 H 0.253 0.747 27 H 0.054 0.946 28 H 0.005 0.995 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.416 0.584 34 H 0.146 0.854 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.092 0.908 42 H 0.020 0.980 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.311 -24.025 0.275 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.238 4.238 3 Si 0.794 3.206 4 H -0.207 1.207 5 H -0.202 1.202 6 H -0.212 1.212 7 C -0.402 4.402 8 H 0.066 0.934 9 N -0.332 5.332 10 C 0.046 3.954 11 C -0.170 4.170 12 C -0.140 4.140 13 C 0.035 3.965 14 H 0.069 0.931 15 N -0.365 5.365 16 C 0.288 3.712 17 O -0.464 6.464 18 C -0.169 4.169 19 C 0.023 3.977 20 H 0.069 0.931 21 C -0.180 4.180 22 C -0.184 4.184 23 C -0.047 4.047 24 O -0.322 6.322 25 C 0.019 3.981 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.023 0.977 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.253 0.747 34 H 0.164 0.836 35 H 0.135 0.865 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.038 0.962 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 6.722 -23.100 0.297 24.060 hybrid contribution 0.263 1.203 -0.267 1.260 sum 6.984 -21.897 0.030 22.984 Atomic orbital electron populations 1.70163 1.06323 1.26076 1.54787 1.25712 0.96162 1.01160 1.00761 0.85295 0.77936 0.79525 0.77869 1.20665 1.20248 1.21151 1.19392 0.92466 0.86538 1.41769 0.93352 1.44230 1.36047 1.01511 1.51450 1.20637 0.87487 0.98237 0.89009 1.21956 1.01373 0.95437 0.98246 1.21600 0.95761 0.97540 0.99114 1.21171 0.97710 0.82569 0.95056 0.93083 1.45945 1.10004 1.14517 1.66036 1.21484 0.82009 0.91121 0.76555 1.90737 1.48808 1.52018 1.54814 1.22017 0.96921 0.93301 1.04620 1.22623 0.94554 0.90472 0.90098 0.93145 1.23014 1.03282 0.94668 0.97001 1.23115 1.02434 0.95397 0.97460 1.23799 0.90779 0.93411 0.96722 1.89081 1.55610 1.45726 1.41738 1.21205 0.95981 0.86629 0.94279 0.93751 0.92726 0.97664 0.89496 0.93638 0.90487 0.89260 0.74660 0.83626 0.86464 0.89154 0.87738 0.88208 0.89906 0.92415 0.88938 0.96215 0.95951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.54 11.19 21.65 0.24 -56.30 16 2 C -0.04 -2.49 4.91 84.86 0.42 -2.07 16 3 Si 0.97 47.76 29.59 68.60 2.03 49.79 16 4 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 5 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 6 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.27 -16.54 9.58 84.03 0.81 -15.73 16 8 H 0.05 3.04 7.89 -2.91 -0.02 3.02 16 9 N -0.61 -33.34 3.00 -699.93 -2.10 -35.44 16 10 C 0.17 8.48 5.28 86.22 0.46 8.93 16 11 C -0.13 -4.83 6.06 30.53 0.19 -4.65 16 12 C -0.10 -3.10 5.36 30.62 0.16 -2.94 16 13 C 0.14 5.27 2.60 45.07 0.12 5.39 16 14 H 0.05 2.27 7.58 -2.39 -0.02 2.25 16 15 N -0.71 -19.92 5.08 -442.16 -2.25 -22.17 16 16 C 0.50 15.58 7.69 87.66 0.67 16.25 16 17 O -0.58 -25.58 15.16 8.35 0.13 -25.45 16 18 C -0.13 -2.44 5.19 29.85 0.15 -2.29 16 19 C 0.08 1.79 2.93 30.97 0.09 1.88 16 20 H 0.05 1.32 7.94 -2.39 -0.02 1.30 16 21 C -0.14 -1.74 6.64 31.58 0.21 -1.53 16 22 C -0.15 -1.84 7.16 31.89 0.23 -1.62 16 23 C 0.03 0.59 7.72 72.66 0.56 1.15 16 24 O -0.40 -12.05 10.57 -137.59 -1.45 -13.50 16 25 C 0.15 6.93 6.09 86.36 0.53 7.45 16 26 H 0.25 14.77 8.31 -92.71 -0.77 13.99 16 27 H 0.05 3.05 6.04 -2.38 -0.01 3.04 16 28 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 29 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 30 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.42 7.77 8.60 -92.71 -0.80 6.98 16 34 H 0.15 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.10 0.78 7.70 -2.39 -0.02 0.76 16 38 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.02 1.18 7.93 -2.39 -0.02 1.16 16 Total: -1.00 -81.95 340.98 1.37 -80.57 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.19 Total: 12.27 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 4.59 Total: 10.23 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -4.10 Total: -113.91 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -1.33 Total: -38.95 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -81.95 1.37 -80.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006780652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.138 kcal (2) G-P(sol) polarization free energy of solvation -81.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds