Wall clock time and date at job start Tue Mar 31 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86793 * 120.00296 * 2 1 4 4 H 1.48507 * 109.47592 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47017 * 299.99628 * 3 2 1 6 6 H 1.48495 * 109.47307 * 59.99511 * 3 2 1 7 7 C 1.38820 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99873 * 163.07076 * 7 2 1 9 9 N 1.36935 * 119.99989 * 343.06974 * 7 2 1 10 10 C 1.46926 * 120.62777 * 151.84727 * 9 7 2 11 11 C 1.53196 * 108.77490 * 126.37115 * 10 9 7 12 12 C 1.53036 * 109.31319 * 54.63131 * 11 10 9 13 13 C 1.53043 * 109.54144 * 298.63666 * 12 11 10 14 14 H 1.08993 * 109.49739 * 301.41184 * 13 12 11 15 15 N 1.46501 * 109.49847 * 181.31433 * 13 12 11 16 16 C 1.34771 * 119.99935 * 155.16775 * 15 13 12 17 17 O 1.21284 * 119.99897 * 359.97438 * 16 15 13 18 18 C 1.50692 * 120.00180 * 180.02562 * 16 15 13 19 19 H 1.08998 * 109.52556 * 300.12013 * 18 16 15 20 20 C 1.53177 * 109.52763 * 179.97438 * 18 16 15 21 21 C 1.53178 * 109.03972 * 183.11309 * 20 18 16 22 22 C 1.53085 * 109.16481 * 56.98257 * 21 20 18 23 23 O 1.42907 * 109.41445 * 302.38953 * 22 21 20 24 24 C 1.42909 * 114.09264 * 61.15831 * 23 22 21 25 25 C 1.46920 * 120.63226 * 331.82402 * 9 7 2 26 26 H 0.97000 * 119.99945 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.58830 * 246.15671 * 10 9 7 28 28 H 1.09002 * 109.59034 * 6.44517 * 10 9 7 29 29 H 1.08997 * 109.50045 * 174.58721 * 11 10 9 30 30 H 1.08999 * 109.49626 * 294.65032 * 11 10 9 31 31 H 1.08997 * 109.46180 * 178.61394 * 12 11 10 32 32 H 1.09000 * 109.45759 * 58.66018 * 12 11 10 33 33 H 0.96998 * 119.99844 * 335.16326 * 15 13 12 34 34 H 1.09000 * 109.54350 * 302.98011 * 20 18 16 35 35 H 1.09007 * 109.54052 * 63.15239 * 20 18 16 36 36 H 1.09005 * 109.51946 * 176.89108 * 21 20 18 37 37 H 1.09001 * 109.52111 * 297.07056 * 21 20 18 38 38 H 1.09002 * 109.48263 * 62.37077 * 22 21 20 39 39 H 1.08997 * 109.48048 * 182.40838 * 22 21 20 40 40 H 1.09007 * 109.47548 * 178.86072 * 24 23 22 41 41 H 1.08999 * 109.48125 * 58.83130 * 24 23 22 42 42 H 1.09007 * 109.58297 * 113.84191 * 25 9 7 43 43 H 1.09004 * 109.58628 * 353.42264 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2227 -0.2718 9 7 1.3700 -2.3623 0.3464 10 6 1.8140 -3.6530 -0.1972 11 6 2.0683 -4.6167 0.9661 12 6 0.8133 -4.7001 1.8379 13 6 0.4985 -3.3183 2.4155 14 1 1.3482 -2.9661 3.0002 15 7 -0.6847 -3.4055 3.2749 16 6 -0.8701 -2.5044 4.2598 17 8 -0.0571 -1.6215 4.4349 18 6 -2.0869 -2.5944 5.1442 19 1 -2.9869 -2.5093 4.5353 20 6 -2.0562 -1.4609 6.1741 21 6 -3.2555 -1.6085 7.1155 22 6 -3.2123 -2.9909 7.7716 23 8 -3.2122 -3.9982 6.7578 24 6 -2.0888 -3.9388 5.8766 25 6 0.2264 -2.3399 1.2685 26 1 -0.4850 0.8400 -0.0004 27 1 1.0404 -4.0613 -0.8474 28 1 2.7332 -3.5132 -0.7662 29 1 2.3054 -5.6058 0.5741 30 1 2.9037 -4.2527 1.5642 31 1 0.9832 -5.4040 2.6526 32 1 -0.0269 -5.0410 1.2331 33 1 -1.3347 -4.1117 3.1350 34 1 -1.1321 -1.5161 6.7496 35 1 -2.1095 -0.5006 5.6611 36 1 -3.2112 -0.8382 7.8854 37 1 -4.1797 -1.5037 6.5471 38 1 -2.3073 -3.0800 8.3725 39 1 -4.0866 -3.1178 8.4100 40 1 -2.1538 -4.7485 5.1497 41 1 -1.1691 -4.0403 6.4527 42 1 -0.6768 -2.6410 0.7377 43 1 0.0993 -1.3339 1.6686 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006877936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:08 Heat of formation + Delta-G solvation = -77.061737 kcal Electronic energy + Delta-G solvation = -23333.511563 eV Core-core repulsion = 19992.502705 eV Total energy + Delta-G solvation = -3341.008857 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.20460 -38.66897 -37.22438 -34.16865 -33.60272 -32.71776 -31.53853 -30.00979 -28.67479 -25.26517 -25.13275 -24.48313 -22.27748 -21.95805 -20.62601 -19.79585 -19.19167 -17.12092 -16.77480 -16.35848 -16.03988 -15.49218 -15.11343 -14.84678 -14.24373 -14.01206 -13.86974 -13.60693 -13.51087 -13.01380 -12.89688 -12.62856 -12.39308 -12.30374 -11.90839 -11.65086 -11.22259 -11.03845 -11.01032 -10.74838 -10.71592 -10.54537 -10.48084 -10.22230 -9.99427 -9.93612 -9.73822 -9.51288 -9.26015 -8.53255 -8.42761 -6.64523 -5.75079 -3.18677 2.99508 3.41538 3.46321 3.50419 3.51965 3.72491 4.54229 4.55852 4.72914 4.76880 4.80047 5.00223 5.18516 5.23615 5.35785 5.39885 5.42953 5.54271 5.55700 5.62363 5.64224 5.71250 5.73602 5.84790 6.07742 6.09511 6.14690 6.23844 6.33763 6.42239 6.50309 6.70279 6.77676 6.93461 6.94887 6.97139 7.30680 7.73289 7.83707 7.93420 8.48836 8.64838 9.23850 9.87783 10.42721 11.33001 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018461 B = 0.004944 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.335157 B = 5661.993454 C = 6849.917063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.007 3.993 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.256 4.256 8 H 0.067 0.933 9 N -0.589 5.589 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.116 3.884 14 H 0.081 0.919 15 N -0.720 5.720 16 C 0.515 3.485 17 O -0.529 6.529 18 C -0.144 4.144 19 H 0.104 0.896 20 C -0.103 4.103 21 C -0.156 4.156 22 C 0.058 3.942 23 O -0.379 6.379 24 C 0.074 3.926 25 C 0.167 3.833 26 H 0.253 0.747 27 H 0.018 0.982 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.392 0.608 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.056 0.944 42 H 0.017 0.983 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.160 -9.742 12.316 16.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.192 4.192 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.386 4.386 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.011 3.989 14 H 0.099 0.901 15 N -0.371 5.371 16 C 0.300 3.700 17 O -0.405 6.405 18 C -0.165 4.165 19 H 0.122 0.878 20 C -0.141 4.141 21 C -0.194 4.194 22 C -0.019 4.019 23 O -0.298 6.298 24 C -0.004 4.004 25 C 0.040 3.960 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.225 0.775 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.074 0.926 42 H 0.035 0.965 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.789 -9.075 12.396 16.417 hybrid contribution 0.189 0.777 -0.142 0.812 sum -5.600 -8.298 12.254 15.823 Atomic orbital electron populations 1.70023 1.05366 1.25417 1.53547 1.25040 0.95261 0.98491 1.00449 0.86241 0.79430 0.83973 0.77234 1.20172 1.21731 1.21445 1.19199 0.92602 0.84778 1.42006 0.91566 1.43974 1.36076 1.01767 1.49361 1.20956 0.97739 0.86882 0.92849 1.21997 0.96985 0.99316 0.98775 1.21673 0.98930 0.96051 0.98735 1.21972 0.87115 0.96881 0.92960 0.90083 1.46127 1.26287 1.31350 1.33334 1.20256 0.86997 0.81885 0.80869 1.90744 1.45227 1.33779 1.70709 1.22012 0.98555 0.98199 0.97769 0.87758 1.21397 0.98263 0.98251 0.96176 1.22227 0.99485 0.97812 0.99846 1.22630 1.01993 0.87393 0.89885 1.87941 1.45473 1.52642 1.43727 1.22504 0.89500 0.95635 0.92724 1.21086 0.88725 0.98848 0.87343 0.93726 0.96429 0.92630 0.92630 0.92146 0.93119 0.92250 0.77516 0.90990 0.90432 0.90550 0.90906 0.93084 0.88852 0.88422 0.92580 0.96534 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 11.20 55.49 0.62 -26.46 16 2 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16 3 Si 0.90 22.68 29.59 -169.99 -5.03 17.65 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 7 C -0.26 -7.27 9.58 -15.06 -0.14 -7.42 16 8 H 0.07 1.84 7.89 -52.48 -0.41 1.42 16 9 N -0.59 -15.10 2.99 -172.31 -0.52 -15.61 16 10 C 0.14 2.96 6.52 -3.71 -0.02 2.94 16 11 C -0.13 -2.22 6.08 -26.61 -0.16 -2.38 16 12 C -0.12 -1.85 5.35 -26.69 -0.14 -1.99 16 13 C 0.12 2.25 2.60 -67.81 -0.18 2.08 16 14 H 0.08 1.80 7.58 -51.93 -0.39 1.41 16 15 N -0.72 -11.52 4.99 -53.69 -0.27 -11.79 16 16 C 0.52 8.82 7.12 -10.99 -0.08 8.74 16 17 O -0.53 -11.66 15.63 5.55 0.09 -11.58 16 18 C -0.14 -1.85 2.73 -91.64 -0.25 -2.10 16 19 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 20 C -0.10 -1.30 4.62 -26.55 -0.12 -1.42 16 21 C -0.16 -1.50 6.14 -26.60 -0.16 -1.66 16 22 C 0.06 0.53 6.84 37.20 0.25 0.78 16 23 O -0.38 -4.27 10.77 -35.23 -0.38 -4.64 16 24 C 0.07 0.80 6.01 37.21 0.22 1.02 16 25 C 0.17 4.10 4.88 -3.71 -0.02 4.08 16 26 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.39 4.87 8.09 -40.82 -0.33 4.54 16 34 H 0.07 0.96 8.03 -51.93 -0.42 0.54 16 35 H 0.08 1.10 8.14 -51.92 -0.42 0.67 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 0.90 7.66 -51.92 -0.40 0.50 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 2.72 6.06 -51.93 -0.31 2.41 16 LS Contribution 337.26 15.07 5.08 5.08 Total: -1.00 -33.40 337.26 -8.60 -42.00 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -7.31 Total: 2.56 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -0.89 Total: 2.78 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.16 Total: -53.86 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.29 Total: -16.22 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.03 Total: 17.65 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.40 -8.60 -42.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006877936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.057 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds