Wall clock time and date at job start Tue Mar 31 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46486 * 90.00064 * 3 2 1 5 5 H 1.48493 * 109.47319 * 209.99868 * 3 2 1 6 6 H 1.48501 * 109.47322 * 330.00350 * 3 2 1 7 7 C 1.38814 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00314 * 162.77229 * 7 2 1 9 9 N 1.36940 * 119.99741 * 342.76707 * 7 2 1 10 10 C 1.46926 * 120.62975 * 152.45397 * 9 7 2 11 11 C 1.53187 * 108.77629 * 126.36813 * 10 9 7 12 12 C 1.53044 * 109.31375 * 54.63309 * 11 10 9 13 13 C 1.53033 * 109.54034 * 298.63686 * 12 11 10 14 14 H 1.09004 * 109.49753 * 301.41329 * 13 12 11 15 15 N 1.46494 * 109.50254 * 181.31663 * 13 12 11 16 16 C 1.34778 * 120.00583 * 154.99805 * 15 13 12 17 17 O 1.21281 * 119.99730 * 0.02562 * 16 15 13 18 18 C 1.50698 * 119.99989 * 179.97438 * 16 15 13 19 19 H 1.08998 * 109.52047 * 59.87569 * 18 16 15 20 20 C 1.53177 * 109.51994 * 180.02562 * 18 16 15 21 21 C 1.53179 * 109.03831 * 176.88653 * 20 18 16 22 22 C 1.53094 * 109.16353 * 303.02308 * 21 20 18 23 23 O 1.42901 * 109.41641 * 57.60206 * 22 21 20 24 24 C 1.42904 * 114.09958 * 298.84628 * 23 22 21 25 25 C 1.46930 * 120.63112 * 332.17432 * 9 7 2 26 26 H 0.96998 * 120.00327 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.58548 * 246.15278 * 10 9 7 28 28 H 1.08998 * 109.58771 * 6.57654 * 10 9 7 29 29 H 1.09003 * 109.50190 * 174.58311 * 11 10 9 30 30 H 1.09002 * 109.49979 * 294.65263 * 11 10 9 31 31 H 1.09005 * 109.45674 * 58.65432 * 12 11 10 32 32 H 1.08993 * 109.46318 * 178.61184 * 12 11 10 33 33 H 0.97005 * 119.99593 * 334.99259 * 15 13 12 34 34 H 1.08999 * 109.54238 * 296.75636 * 20 18 16 35 35 H 1.08999 * 109.54476 * 57.02212 * 20 18 16 36 36 H 1.08997 * 109.51750 * 62.92326 * 21 20 18 37 37 H 1.08993 * 109.52318 * 183.05117 * 21 20 18 38 38 H 1.08999 * 109.47795 * 177.59074 * 22 21 20 39 39 H 1.09004 * 109.47363 * 297.61436 * 22 21 20 40 40 H 1.08997 * 109.47894 * 301.17271 * 24 23 22 41 41 H 1.08997 * 109.47661 * 181.13862 * 24 23 22 42 42 H 1.08997 * 109.58242 * 353.41759 * 25 9 7 43 43 H 1.08994 * 109.58811 * 113.84402 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0463 1.4002 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2775 9 7 1.3717 -2.3616 0.3503 10 6 1.8215 -3.6548 -0.1827 11 6 2.0734 -4.6099 0.9882 12 6 0.8147 -4.6909 1.8551 13 6 0.4936 -3.3062 2.4219 14 1 1.3400 -2.9477 3.0079 15 7 -0.6930 -3.3907 3.2768 16 6 -0.8834 -2.4855 4.2570 17 8 -0.0725 -1.6006 4.4311 18 6 -2.1044 -2.5723 5.1360 19 1 -2.1117 -3.5304 5.6557 20 6 -2.0796 -1.4338 6.1604 21 6 -3.3621 -1.4857 6.9963 22 6 -4.5735 -1.4021 6.0639 23 8 -4.5189 -2.4711 5.1171 24 6 -3.3643 -2.4466 4.2754 25 6 0.2274 -2.3367 1.2716 26 1 -0.4850 0.8400 -0.0004 27 1 1.0517 -4.0695 -0.8335 28 1 2.7440 -3.5166 -0.7465 29 1 2.3147 -5.6010 0.6039 30 1 2.9052 -4.2396 1.5874 31 1 -0.0220 -5.0381 1.2488 32 1 0.9829 -5.3889 2.6751 33 1 -1.3418 -4.0983 3.1373 34 1 -1.2141 -1.5492 6.8129 35 1 -2.0214 -0.4772 5.6411 36 1 -3.3957 -2.4216 7.5540 37 1 -3.3779 -0.6466 7.6917 38 1 -5.4892 -1.4817 6.6497 39 1 -4.5609 -0.4482 5.5365 40 1 -3.3359 -1.5066 3.7245 41 1 -3.4091 -3.2787 3.5728 42 1 0.0986 -1.3292 1.6671 43 1 -0.6750 -2.6418 0.7419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006877946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:11 Heat of formation + Delta-G solvation = -76.867532 kcal Electronic energy + Delta-G solvation = -23444.818659 eV Core-core repulsion = 20103.818223 eV Total energy + Delta-G solvation = -3341.000436 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.17721 -38.63798 -37.22897 -34.16806 -33.57001 -32.71939 -31.49277 -30.00560 -28.69414 -25.27366 -25.07974 -24.42706 -22.27068 -21.96179 -20.62489 -19.74156 -19.20780 -17.09476 -16.77641 -16.29934 -16.00142 -15.47424 -15.05836 -14.78258 -14.32581 -14.05147 -13.74955 -13.66143 -13.35739 -13.11748 -12.83809 -12.65009 -12.32894 -12.32157 -11.90820 -11.61976 -11.18762 -11.02509 -10.98927 -10.74745 -10.72721 -10.48470 -10.47810 -10.23629 -9.98488 -9.93591 -9.68085 -9.51850 -9.24799 -8.53833 -8.42340 -6.65417 -5.75169 -3.18309 2.98750 3.42829 3.48659 3.50317 3.50719 3.78882 4.54223 4.59016 4.75512 4.80150 4.84599 5.06929 5.21447 5.30338 5.36021 5.40923 5.50344 5.54370 5.62518 5.65777 5.66476 5.72500 5.76697 5.86508 6.05252 6.08452 6.14889 6.26002 6.33827 6.42156 6.50596 6.70268 6.77722 6.94280 6.96511 7.02650 7.30564 7.72669 7.83304 7.93382 8.48384 8.64828 9.23645 9.87667 10.42327 11.32886 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016341 B = 0.005320 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.070502 B = 5262.089974 C = 6325.320815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.902 3.098 4 H -0.286 1.286 5 H -0.279 1.279 6 H -0.291 1.291 7 C -0.257 4.257 8 H 0.067 0.933 9 N -0.589 5.589 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.116 3.884 14 H 0.081 0.919 15 N -0.720 5.720 16 C 0.515 3.485 17 O -0.529 6.529 18 C -0.141 4.141 19 H 0.100 0.900 20 C -0.103 4.103 21 C -0.155 4.155 22 C 0.056 3.944 23 O -0.380 6.380 24 C 0.071 3.929 25 C 0.167 3.833 26 H 0.253 0.747 27 H 0.018 0.982 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.392 0.608 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.242 -8.459 10.940 15.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.192 4.192 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.204 1.204 6 H -0.218 1.218 7 C -0.386 4.386 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.011 3.989 14 H 0.099 0.901 15 N -0.371 5.371 16 C 0.299 3.701 17 O -0.404 6.404 18 C -0.163 4.163 19 H 0.119 0.881 20 C -0.141 4.141 21 C -0.193 4.193 22 C -0.020 4.020 23 O -0.298 6.298 24 C -0.006 4.006 25 C 0.040 3.960 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.225 0.775 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -6.879 -7.788 11.008 15.137 hybrid contribution 0.315 0.654 0.000 0.725 sum -6.564 -7.134 11.008 14.668 Atomic orbital electron populations 1.70017 1.05324 1.25490 1.53472 1.25020 0.95269 0.98452 1.00481 0.86301 0.79096 0.83646 0.77806 1.21291 1.20391 1.21763 1.19166 0.92717 0.84823 1.41912 0.91580 1.43957 1.35966 1.01622 1.49602 1.20954 0.97709 0.86850 0.92876 1.22005 0.96958 0.99339 0.98802 1.21674 0.98904 0.96063 0.98762 1.21883 0.87053 0.96863 0.93123 0.90127 1.46125 1.26126 1.31161 1.33688 1.20280 0.87149 0.81858 0.80772 1.90744 1.45744 1.33825 1.70136 1.21994 0.94504 1.02114 0.97719 0.88150 1.21405 0.97583 0.98277 0.96867 1.22218 0.95363 1.02954 0.98721 1.22628 0.98319 0.90442 0.90641 1.87929 1.42538 1.49816 1.49521 1.22532 0.83288 1.03256 0.91523 1.21001 0.88764 0.98969 0.87313 0.93698 0.96384 0.92633 0.92630 0.92154 0.92241 0.93131 0.77509 0.90783 0.90670 0.91125 0.90589 0.88898 0.92885 0.91974 0.88312 0.88755 0.96562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 11.19 55.49 0.62 -26.23 16 2 C 0.01 0.20 4.91 -17.43 -0.09 0.11 16 3 Si 0.90 22.63 29.59 -169.99 -5.03 17.60 16 4 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.26 -7.26 9.58 -15.06 -0.14 -7.40 16 8 H 0.07 1.83 7.88 -52.49 -0.41 1.41 16 9 N -0.59 -15.03 3.00 -172.58 -0.52 -15.55 16 10 C 0.14 2.96 6.52 -3.71 -0.02 2.94 16 11 C -0.13 -2.22 6.08 -26.61 -0.16 -2.39 16 12 C -0.12 -1.86 5.36 -26.69 -0.14 -2.00 16 13 C 0.12 2.26 2.59 -68.04 -0.18 2.08 16 14 H 0.08 1.80 7.58 -51.93 -0.39 1.41 16 15 N -0.72 -11.53 4.99 -53.91 -0.27 -11.80 16 16 C 0.51 8.82 7.12 -10.99 -0.08 8.74 16 17 O -0.53 -11.68 15.63 5.56 0.09 -11.59 16 18 C -0.14 -1.83 2.73 -91.63 -0.25 -2.08 16 19 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 20 C -0.10 -1.31 4.62 -26.55 -0.12 -1.43 16 21 C -0.15 -1.50 6.14 -26.59 -0.16 -1.67 16 22 C 0.06 0.57 6.84 37.21 0.25 0.82 16 23 O -0.38 -4.66 10.77 -35.23 -0.38 -5.04 16 24 C 0.07 0.89 6.01 37.20 0.22 1.11 16 25 C 0.17 4.06 4.86 -3.93 -0.02 4.04 16 26 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.39 4.88 8.09 -40.82 -0.33 4.55 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.09 8.03 -51.93 -0.42 0.67 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.10 1.08 7.66 -51.93 -0.40 0.68 16 42 H 0.09 2.71 6.04 -51.93 -0.31 2.40 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 337.20 15.07 5.08 5.08 Total: -1.00 -33.12 337.20 -8.61 -41.72 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.31 Total: 2.92 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -0.89 Total: 2.88 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.17 Total: -53.58 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.29 Total: -16.63 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.03 Total: 17.60 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.12 -8.61 -41.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006877946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.146 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds