Wall clock time and date at job start Tue Mar 31 2020 06:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00280 * 2 1 4 4 H 1.48503 * 109.46986 * 272.94796 * 3 2 1 5 5 H 1.48498 * 109.47364 * 32.94399 * 3 2 1 6 6 H 1.48499 * 109.47232 * 152.95141 * 3 2 1 7 7 C 1.38811 * 119.99497 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00377 * 339.34831 * 7 2 1 9 9 N 1.36940 * 119.99647 * 159.35030 * 7 2 1 10 10 C 1.46917 * 120.63071 * 332.62338 * 9 7 2 11 11 C 1.53194 * 108.77837 * 233.61293 * 10 9 7 12 12 C 1.53046 * 109.30998 * 305.36513 * 11 10 9 13 13 C 1.53039 * 109.53432 * 61.36605 * 12 11 10 14 14 H 1.08995 * 109.49827 * 58.62200 * 13 12 11 15 15 N 1.46507 * 109.49464 * 178.68340 * 13 12 11 16 16 C 1.34774 * 119.99788 * 205.21472 * 15 13 12 17 17 O 1.21278 * 120.00140 * 359.71668 * 16 15 13 18 18 C 1.50695 * 119.99981 * 179.72537 * 16 15 13 19 19 H 1.09004 * 109.52298 * 300.11959 * 18 16 15 20 20 C 1.53181 * 109.52714 * 179.97438 * 18 16 15 21 21 C 1.53172 * 109.04099 * 183.11247 * 20 18 16 22 22 C 1.53093 * 109.16646 * 56.97694 * 21 20 18 23 23 O 1.42911 * 109.41489 * 302.39581 * 22 21 20 24 24 C 1.42900 * 114.09574 * 61.15199 * 23 22 21 25 25 C 1.46940 * 120.60394 * 152.65095 * 9 7 2 26 26 H 0.97001 * 119.99180 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.58552 * 113.82694 * 10 9 7 28 28 H 1.08997 * 109.70835 * 353.47248 * 10 9 7 29 29 H 1.09003 * 109.49727 * 185.41735 * 11 10 9 30 30 H 1.09000 * 109.49685 * 65.31691 * 11 10 9 31 31 H 1.08997 * 109.46348 * 301.34256 * 12 11 10 32 32 H 1.09005 * 109.45490 * 181.38430 * 12 11 10 33 33 H 0.97001 * 119.99708 * 24.92795 * 15 13 12 34 34 H 1.08996 * 109.54176 * 302.97878 * 20 18 16 35 35 H 1.09002 * 109.54233 * 63.23935 * 20 18 16 36 36 H 1.09003 * 109.52523 * 176.88807 * 21 20 18 37 37 H 1.09007 * 109.52203 * 297.07251 * 21 20 18 38 38 H 1.09002 * 109.47669 * 62.37515 * 22 21 20 39 39 H 1.08993 * 109.48352 * 182.40876 * 22 21 20 40 40 H 1.09004 * 109.47716 * 178.85697 * 24 23 22 41 41 H 1.09001 * 109.47907 * 58.82904 * 24 23 22 42 42 H 1.09006 * 109.61492 * 6.61598 * 25 9 7 43 43 H 1.08994 * 109.55838 * 246.19147 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4355 2.0823 -1.3983 5 1 1.4804 2.6339 0.7614 6 1 3.5777 1.4228 0.6367 7 6 2.0102 -1.2022 0.0005 8 1 1.5222 -2.1073 0.3308 9 7 3.3136 -1.2405 -0.4177 10 6 3.8173 -0.2597 -1.3886 11 6 4.4617 -1.0101 -2.5585 12 6 5.5284 -1.9665 -2.0202 13 6 4.8745 -2.9913 -1.0905 14 1 4.1082 -3.5412 -1.6367 15 7 5.8911 -3.9256 -0.6004 16 6 5.5344 -5.1647 -0.2084 17 8 4.3713 -5.5046 -0.2564 18 6 6.5809 -6.1278 0.2898 19 1 7.3193 -6.3006 -0.4932 20 6 5.9164 -7.4548 0.6691 21 6 6.9767 -8.3976 1.2463 22 6 7.6512 -7.7226 2.4434 23 8 8.2220 -6.4799 2.0286 24 6 7.2708 -5.5405 1.5239 25 6 4.2343 -2.2640 0.0961 26 1 -0.4849 0.8401 -0.0004 27 1 4.5601 0.3792 -0.9108 28 1 2.9925 0.3507 -1.7561 29 1 4.9243 -0.2950 -3.2388 30 1 3.6988 -1.5782 -3.0907 31 1 6.2779 -1.4005 -1.4670 32 1 6.0056 -2.4838 -2.8526 33 1 6.8214 -3.6536 -0.5621 34 1 5.1431 -7.2750 1.4158 35 1 5.4710 -7.9061 -0.2176 36 1 6.5027 -9.3243 1.5700 37 1 7.7236 -8.6167 0.4832 38 1 6.9111 -7.5406 3.2226 39 1 8.4361 -8.3715 2.8319 40 1 7.7817 -4.6174 1.2500 41 1 6.5257 -5.3299 2.2911 42 1 3.6831 -2.9780 0.7081 43 1 5.0107 -1.7886 0.6954 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006877951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:14 Heat of formation + Delta-G solvation = -71.139152 kcal Electronic energy + Delta-G solvation = -23153.526666 eV Core-core repulsion = 19812.774632 eV Total energy + Delta-G solvation = -3340.752035 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.41848 -38.88384 -37.56023 -34.51400 -33.75993 -32.61794 -31.60751 -30.84512 -29.06672 -25.36190 -25.24004 -24.66498 -22.64567 -21.99484 -20.91178 -19.99097 -19.55881 -17.32355 -16.82001 -16.50186 -16.21569 -15.70787 -15.28360 -15.21511 -14.60321 -14.28145 -13.94599 -13.87225 -13.60115 -13.22303 -13.12188 -12.91914 -12.69174 -12.40704 -12.08244 -11.81062 -11.54136 -11.35847 -11.20191 -11.15127 -10.91351 -10.76466 -10.66023 -10.17435 -10.01200 -9.88911 -9.74747 -9.56809 -9.43709 -9.01019 -8.52633 -6.97159 -5.92553 -3.29195 2.71695 3.21187 3.31742 3.48425 3.51242 3.59836 4.39604 4.53873 4.57664 4.60875 4.66936 4.86978 4.99162 5.03628 5.11924 5.19597 5.26708 5.32304 5.41744 5.44649 5.50508 5.52971 5.60259 5.70131 5.80661 5.89656 5.93437 6.02036 6.08630 6.18435 6.29685 6.41091 6.52067 6.60706 6.63910 6.76544 6.84914 6.92767 7.63547 7.97734 8.33953 8.38179 8.96006 9.73516 10.09122 11.23452 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027887 B = 0.003966 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.816370 B = 7058.083785 C = 7305.356814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.883 3.117 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.259 4.259 8 H 0.086 0.914 9 N -0.601 5.601 10 C 0.122 3.878 11 C -0.132 4.132 12 C -0.116 4.116 13 C 0.124 3.876 14 H 0.090 0.910 15 N -0.723 5.723 16 C 0.515 3.485 17 O -0.528 6.528 18 C -0.143 4.143 19 H 0.103 0.897 20 C -0.104 4.104 21 C -0.156 4.156 22 C 0.056 3.944 23 O -0.379 6.379 24 C 0.071 3.929 25 C 0.145 3.855 26 H 0.262 0.738 27 H 0.026 0.974 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.395 0.605 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.623 -12.150 -0.097 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.714 3.286 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.196 1.196 7 C -0.388 4.388 8 H 0.104 0.896 9 N -0.325 5.325 10 C -0.003 4.003 11 C -0.172 4.172 12 C -0.154 4.154 13 C 0.018 3.982 14 H 0.108 0.892 15 N -0.375 5.375 16 C 0.300 3.700 17 O -0.404 6.404 18 C -0.164 4.164 19 H 0.121 0.879 20 C -0.142 4.142 21 C -0.193 4.193 22 C -0.020 4.020 23 O -0.297 6.297 24 C -0.006 4.006 25 C 0.018 3.982 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.228 0.772 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 17.775 -12.264 -0.088 21.595 hybrid contribution 0.580 1.095 -0.113 1.244 sum 18.355 -11.170 -0.201 21.487 Atomic orbital electron populations 1.69850 1.05724 1.26498 1.52978 1.25264 0.95214 0.97507 0.99520 0.86942 0.80007 0.84698 0.76963 1.21609 1.23149 1.19644 1.18953 0.84818 0.94908 1.40089 0.89609 1.44286 1.08727 1.32777 1.46732 1.21393 0.97418 0.92093 0.89442 1.22002 0.97843 0.98349 0.98984 1.21679 0.98377 0.97020 0.98330 1.21711 0.90052 0.89486 0.96907 0.89199 1.46163 1.11404 1.13526 1.66359 1.20356 0.89624 0.82312 0.77719 1.90756 1.19429 1.76784 1.53411 1.22014 0.97968 0.96322 1.00127 0.87910 1.21412 0.97404 0.92965 1.02372 1.22225 0.98931 0.99222 0.98952 1.22647 0.98386 0.85406 0.95602 1.87947 1.33902 1.25413 1.82444 1.22522 0.92433 0.91895 0.93741 1.21208 0.92657 0.91283 0.93055 0.92770 0.95662 0.90760 0.92229 0.91404 0.92085 0.92457 0.77181 0.90687 0.90638 0.90449 0.91021 0.92870 0.88774 0.88338 0.92190 0.91512 0.96009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.31 13.97 55.49 0.78 -27.53 16 2 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 3 Si 0.88 22.49 24.35 -169.99 -4.14 18.35 16 4 H -0.29 -7.02 6.62 56.52 0.37 -6.65 16 5 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 6 H -0.27 -6.76 6.63 56.52 0.38 -6.38 16 7 C -0.26 -7.47 10.03 -15.06 -0.15 -7.62 16 8 H 0.09 2.69 8.05 -52.49 -0.42 2.27 16 9 N -0.60 -14.55 2.77 -172.32 -0.48 -15.03 16 10 C 0.12 2.63 4.20 -3.71 -0.02 2.61 16 11 C -0.13 -2.25 6.08 -26.61 -0.16 -2.41 16 12 C -0.12 -1.68 5.35 -26.69 -0.14 -1.82 16 13 C 0.12 2.07 2.60 -67.81 -0.18 1.89 16 14 H 0.09 1.78 7.57 -51.93 -0.39 1.38 16 15 N -0.72 -9.38 4.99 -53.69 -0.27 -9.65 16 16 C 0.51 7.28 7.13 -10.99 -0.08 7.21 16 17 O -0.53 -10.02 15.63 5.56 0.09 -9.93 16 18 C -0.14 -1.48 2.73 -91.63 -0.25 -1.73 16 19 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 20 C -0.10 -1.08 4.62 -26.55 -0.12 -1.20 16 21 C -0.16 -1.23 6.14 -26.59 -0.16 -1.39 16 22 C 0.06 0.46 6.84 37.21 0.25 0.71 16 23 O -0.38 -3.85 10.77 -35.23 -0.38 -4.23 16 24 C 0.07 0.69 6.01 37.20 0.22 0.92 16 25 C 0.15 2.97 6.10 -3.71 -0.02 2.94 16 26 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 27 H 0.03 0.53 7.08 -51.93 -0.37 0.17 16 28 H 0.07 1.76 4.50 -51.93 -0.23 1.53 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.39 3.77 8.09 -40.82 -0.33 3.44 16 34 H 0.07 0.89 8.03 -51.93 -0.42 0.47 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.80 7.66 -51.93 -0.40 0.40 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 1.50 7.93 -51.93 -0.41 1.09 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 330.81 15.07 4.99 4.99 Total: -1.00 -33.72 330.81 -7.55 -41.27 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.24 Total: 1.07 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -0.90 Total: 0.70 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 0.03 Total: -52.21 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.29 Total: -14.16 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.14 Total: 18.35 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.72 -7.55 -41.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006877951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.871 kcal (2) G-P(sol) polarization free energy of solvation -33.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds