Wall clock time and date at job start Tue Mar 31 2020 06:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 120.00124 * 2 1 4 4 H 1.48502 * 109.47254 * 90.00516 * 3 2 1 5 5 H 1.48507 * 109.47179 * 210.00473 * 3 2 1 6 6 H 1.48503 * 109.47274 * 330.00252 * 3 2 1 7 7 C 1.38813 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00328 * 18.72341 * 7 2 1 9 9 N 1.36936 * 119.99815 * 198.72140 * 7 2 1 10 10 C 1.46931 * 120.63067 * 30.81366 * 9 7 2 11 11 C 1.53631 * 108.54198 * 126.36612 * 10 9 7 12 12 C 1.53047 * 109.24018 * 54.85812 * 11 10 9 13 13 C 1.53041 * 109.53799 * 298.50913 * 12 11 10 14 14 H 1.09009 * 109.52382 * 301.40109 * 13 12 11 15 15 N 1.46494 * 109.49796 * 181.31639 * 13 12 11 16 16 C 1.34778 * 119.99996 * 155.15693 * 15 13 12 17 17 O 1.21278 * 119.99819 * 0.02562 * 16 15 13 18 18 C 1.50706 * 119.99936 * 180.02562 * 16 15 13 19 19 C 1.52998 * 109.46804 * 180.02562 * 18 16 15 20 20 H 1.09005 * 110.75254 * 54.30531 * 19 18 16 21 21 C 1.55313 * 110.84509 * 177.77104 * 19 18 16 22 22 C 1.55207 * 100.82172 * 152.18106 * 21 19 18 23 23 O 1.43642 * 105.26380 * 323.81618 * 22 21 19 24 24 C 1.43242 * 109.96988 * 24.28590 * 23 22 21 25 25 C 1.46926 * 120.63144 * 211.09268 * 9 7 2 26 26 H 0.97001 * 120.00494 * 174.95540 * 1 2 3 27 27 H 1.08998 * 109.58514 * 246.19958 * 10 9 7 28 28 H 1.09003 * 109.58399 * 6.62546 * 10 9 7 29 29 H 1.09000 * 109.63497 * 294.86629 * 11 10 9 30 30 H 1.08999 * 109.45475 * 174.73742 * 11 10 9 31 31 H 1.08998 * 109.45736 * 178.48899 * 12 11 10 32 32 H 1.08997 * 109.45059 * 58.52349 * 12 11 10 33 33 H 0.96998 * 119.99928 * 335.16903 * 15 13 12 34 34 H 1.08995 * 109.47045 * 300.00234 * 18 16 15 35 35 H 1.08997 * 109.46589 * 60.00359 * 18 16 15 36 36 H 1.09000 * 111.12622 * 270.24549 * 21 19 18 37 37 H 1.08998 * 111.12093 * 34.40932 * 21 19 18 38 38 H 1.09000 * 110.36728 * 204.79984 * 22 21 19 39 39 H 1.08999 * 110.21622 * 82.75545 * 22 21 19 40 40 H 1.08999 * 109.83446 * 238.77181 * 24 23 22 41 41 H 1.09001 * 109.90549 * 117.84528 * 24 23 22 42 42 H 1.09003 * 109.58802 * 353.37372 * 25 9 7 43 43 H 1.08997 * 109.58881 * 113.66103 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5477 1.4401 -0.7002 6 1 1.4476 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.5130 -2.1126 -0.3012 9 7 3.3252 -1.2338 0.3801 10 6 3.8392 -0.2838 1.3762 11 6 4.5288 -1.0766 2.4970 12 6 5.5974 -1.9868 1.8870 13 6 4.9367 -2.9817 0.9300 14 1 4.1959 -3.5706 1.4711 15 7 5.9561 -3.8728 0.3707 16 6 5.6102 -5.0971 -0.0741 17 8 4.4550 -5.4610 -0.0117 18 6 6.6590 -6.0140 -0.6490 19 6 6.0068 -7.3305 -1.0761 20 1 5.1744 -7.1465 -1.7555 21 6 7.0508 -8.2794 -1.7255 22 6 6.4306 -9.6637 -1.3968 23 8 5.8469 -9.5165 -0.0926 24 6 5.5432 -8.1387 0.1548 25 6 4.2503 -2.2142 -0.2043 26 1 -0.4851 -0.8368 -0.0739 27 1 4.5570 0.3874 0.9047 28 1 3.0129 0.2940 1.7905 29 1 3.7919 -1.6830 3.0236 30 1 4.9970 -0.3840 3.1964 31 1 6.1073 -2.5312 2.6817 32 1 6.3201 -1.3818 1.3397 33 1 6.8800 -3.5817 0.3206 34 1 7.1208 -5.5399 -1.5150 35 1 7.4203 -6.2132 0.1052 36 1 7.1122 -8.1184 -2.8018 37 1 8.0285 -8.1672 -1.2569 38 1 7.2039 -10.4317 -1.3807 39 1 5.6630 -9.9158 -2.1285 40 1 6.0741 -7.7966 1.0431 41 1 4.4694 -8.0148 0.2954 42 1 3.6955 -2.9105 -0.8332 43 1 4.9995 -1.6974 -0.8041 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006974176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:59 Heat of formation + Delta-G solvation = -73.779404 kcal Electronic energy + Delta-G solvation = -22831.864620 eV Core-core repulsion = 19490.998095 eV Total energy + Delta-G solvation = -3340.866525 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.22202 -39.12090 -37.58066 -34.47578 -33.69143 -32.56422 -30.76107 -30.31644 -29.25991 -26.91979 -25.01088 -23.00990 -22.51970 -21.73665 -21.03241 -20.08695 -19.55222 -17.31736 -17.23341 -16.68798 -16.23625 -15.66713 -15.30093 -14.96877 -14.74979 -14.16036 -13.93959 -13.67541 -13.52243 -13.37332 -13.14436 -12.77183 -12.43945 -12.37458 -12.09898 -11.86463 -11.56963 -11.50920 -11.13058 -11.03878 -11.00788 -10.89728 -10.62294 -10.08717 -9.88255 -9.72798 -9.63635 -9.55148 -9.12227 -8.97877 -8.42893 -7.03336 -6.21435 -3.33449 2.74911 3.23219 3.38813 3.52879 3.68973 3.72486 4.18234 4.45870 4.58745 4.65397 4.74264 4.94389 5.04226 5.06708 5.12622 5.20754 5.28206 5.32622 5.40160 5.45679 5.45799 5.53252 5.56945 5.62823 5.81342 5.91340 5.94152 6.02070 6.02213 6.18451 6.30233 6.41096 6.52811 6.61468 6.65499 6.77111 6.83812 6.93011 7.64258 8.08028 8.36818 8.47834 9.09707 9.60836 10.22012 11.16382 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029742 B = 0.003634 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.192826 B = 7702.787132 C = 8132.451755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.016 4.016 3 Si 1.069 2.931 4 H -0.293 1.293 5 H -0.286 1.286 6 H -0.300 1.300 7 C -0.343 4.343 8 H 0.065 0.935 9 N -0.601 5.601 10 C 0.121 3.879 11 C -0.132 4.132 12 C -0.115 4.115 13 C 0.124 3.876 14 H 0.087 0.913 15 N -0.725 5.725 16 C 0.506 3.494 17 O -0.532 6.532 18 C -0.131 4.131 19 C -0.106 4.106 20 H 0.095 0.905 21 C -0.153 4.153 22 C 0.051 3.949 23 O -0.389 6.389 24 C 0.060 3.940 25 C 0.143 3.857 26 H 0.263 0.737 27 H 0.027 0.973 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.395 0.605 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.620 -11.933 -0.644 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.217 4.217 3 Si 0.901 3.099 4 H -0.221 1.221 5 H -0.212 1.212 6 H -0.227 1.227 7 C -0.472 4.472 8 H 0.083 0.917 9 N -0.325 5.325 10 C -0.005 4.005 11 C -0.172 4.172 12 C -0.153 4.153 13 C 0.019 3.981 14 H 0.105 0.895 15 N -0.376 5.376 16 C 0.291 3.709 17 O -0.408 6.408 18 C -0.171 4.171 19 C -0.125 4.125 20 H 0.114 0.886 21 C -0.191 4.191 22 C -0.026 4.026 23 O -0.308 6.308 24 C -0.016 4.016 25 C 0.016 3.984 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.228 0.772 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 18.494 -10.728 -0.409 21.384 hybrid contribution 0.764 -1.275 -0.260 1.509 sum 19.259 -12.002 -0.669 22.702 Atomic orbital electron populations 1.70882 1.06038 1.30052 1.49201 1.26269 0.96648 1.01240 0.97568 0.83715 0.74603 0.75648 0.75939 1.22126 1.21240 1.22745 1.20260 0.85458 0.95111 1.46359 0.91737 1.44288 1.07149 1.37073 1.44004 1.21523 0.97208 0.92319 0.89413 1.22076 0.97672 0.98619 0.98813 1.21671 0.98319 0.97310 0.98050 1.21702 0.89788 0.90481 0.96120 0.89466 1.46138 1.11979 1.15718 1.63718 1.20594 0.89917 0.82165 0.78182 1.90751 1.20196 1.74884 1.54998 1.21675 0.97982 0.95024 1.02407 1.22480 0.98411 0.93650 0.97961 0.88649 1.23391 0.99091 0.94741 1.01876 1.23373 0.96774 0.97072 0.85357 1.88397 1.82374 1.26159 1.33897 1.23199 1.01519 0.80112 0.96798 1.21223 0.92558 0.91751 0.92889 0.92638 0.95537 0.90642 0.91611 0.92220 0.92565 0.92098 0.77213 0.88469 0.88796 0.89695 0.90249 0.89915 0.92203 0.91696 0.90253 0.91976 0.96286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.18 13.70 55.49 0.76 -28.42 16 2 C -0.02 -0.47 5.24 -17.43 -0.09 -0.56 16 3 Si 1.07 26.60 24.73 -169.99 -4.20 22.40 16 4 H -0.29 -6.78 6.56 56.52 0.37 -6.41 16 5 H -0.29 -6.78 6.80 56.52 0.38 -6.39 16 6 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 7 C -0.34 -9.98 9.88 -15.06 -0.15 -10.13 16 8 H 0.06 2.05 8.06 -52.49 -0.42 1.63 16 9 N -0.60 -14.74 2.72 -172.04 -0.47 -15.21 16 10 C 0.12 2.60 4.23 -3.48 -0.01 2.58 16 11 C -0.13 -2.25 6.10 -26.38 -0.16 -2.41 16 12 C -0.12 -1.68 5.35 -26.69 -0.14 -1.82 16 13 C 0.12 2.11 2.60 -67.81 -0.18 1.93 16 14 H 0.09 1.76 7.58 -51.92 -0.39 1.36 16 15 N -0.72 -9.33 5.08 -53.69 -0.27 -9.60 16 16 C 0.51 6.93 7.61 -10.98 -0.08 6.84 16 17 O -0.53 -9.85 14.71 5.56 0.08 -9.77 16 18 C -0.13 -1.17 5.10 -27.88 -0.14 -1.32 16 19 C -0.11 -1.07 2.56 -88.67 -0.23 -1.30 16 20 H 0.10 1.12 7.97 -51.93 -0.41 0.71 16 21 C -0.15 -1.14 6.64 -24.34 -0.16 -1.30 16 22 C 0.05 0.45 7.78 38.33 0.30 0.75 16 23 O -0.39 -4.86 11.36 -35.23 -0.40 -5.26 16 24 C 0.06 0.73 6.53 37.88 0.25 0.98 16 25 C 0.14 3.00 6.09 -3.71 -0.02 2.98 16 26 H 0.26 8.32 8.73 -40.82 -0.36 7.97 16 27 H 0.03 0.55 7.10 -51.93 -0.37 0.18 16 28 H 0.08 1.77 4.76 -51.93 -0.25 1.52 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.39 3.64 8.60 -40.82 -0.35 3.29 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.65 8.01 -51.93 -0.42 0.24 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.75 7.72 -51.93 -0.40 0.35 16 41 H 0.08 1.13 7.83 -51.93 -0.41 0.72 16 42 H 0.06 1.44 7.93 -51.93 -0.41 1.03 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 334.08 15.07 5.03 5.03 Total: -1.00 -34.53 334.08 -7.55 -42.08 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -7.26 Total: 1.53 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -0.83 Total: -2.79 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.02 Total: -53.23 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.32 Total: -15.03 kcal Atomic # 14 Polarization: 26.60 SS G_CDS: -4.20 Total: 22.40 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.53 -7.55 -42.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006974176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.697 kcal (2) G-P(sol) polarization free energy of solvation -34.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds