Wall clock time and date at job start Tue Mar 31 2020 06:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99609 * 2 1 4 4 H 1.48502 * 109.47041 * 239.99658 * 3 2 1 5 5 H 1.48491 * 109.47233 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46869 * 120.00128 * 3 2 1 7 7 C 1.38808 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99713 * 163.07994 * 7 2 1 9 9 N 1.36933 * 120.00127 * 343.07982 * 7 2 1 10 10 C 1.46932 * 120.63041 * 151.84156 * 9 7 2 11 11 C 1.53189 * 108.77382 * 126.37342 * 10 9 7 12 12 C 1.53038 * 109.31644 * 54.63359 * 11 10 9 13 13 C 1.53042 * 109.53918 * 298.63820 * 12 11 10 14 14 H 1.09001 * 109.52046 * 301.39630 * 13 12 11 15 15 N 1.46502 * 109.49925 * 181.31596 * 13 12 11 16 16 C 1.34779 * 120.00093 * 155.15659 * 15 13 12 17 17 O 1.21275 * 119.99687 * 0.02562 * 16 15 13 18 18 C 1.50700 * 119.99801 * 179.97438 * 16 15 13 19 19 C 1.53002 * 109.46808 * 180.02562 * 18 16 15 20 20 H 1.08996 * 110.74821 * 302.97863 * 19 18 16 21 21 C 1.55308 * 111.02009 * 179.38915 * 19 18 16 22 22 C 1.54942 * 100.93956 * 207.59732 * 21 19 18 23 23 O 1.43650 * 105.13874 * 36.44021 * 22 21 19 24 24 C 1.43235 * 109.97017 * 335.57701 * 23 22 21 25 25 C 1.46927 * 120.63110 * 331.82082 * 9 7 2 26 26 H 0.96999 * 120.00048 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.58558 * 246.16002 * 10 9 7 28 28 H 1.08994 * 109.58672 * 6.44320 * 10 9 7 29 29 H 1.08995 * 109.49610 * 174.58794 * 11 10 9 30 30 H 1.09009 * 109.49468 * 294.64835 * 11 10 9 31 31 H 1.09003 * 109.46261 * 178.61538 * 12 11 10 32 32 H 1.08999 * 109.46111 * 58.65485 * 12 11 10 33 33 H 0.96998 * 119.99515 * 335.16266 * 15 13 12 34 34 H 1.09004 * 109.46950 * 60.00629 * 18 16 15 35 35 H 1.09002 * 109.47240 * 300.00399 * 18 16 15 36 36 H 1.08994 * 111.12618 * 89.67980 * 21 19 18 37 37 H 1.09001 * 111.12352 * 325.51513 * 21 19 18 38 38 H 1.09007 * 110.31259 * 277.53045 * 22 21 19 39 39 H 1.08997 * 110.31510 * 155.35925 * 22 21 19 40 40 H 1.08998 * 109.82941 * 121.22202 * 24 23 22 41 41 H 1.09003 * 109.82925 * 242.19381 * 24 23 22 42 42 H 1.09000 * 109.58365 * 113.84269 * 25 9 7 43 43 H 1.08998 * 109.58700 * 353.41629 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3701 -2.3622 0.3462 10 6 1.8142 -3.6529 -0.1976 11 6 2.0684 -4.6167 0.9657 12 6 0.8133 -4.7003 1.8373 13 6 0.4984 -3.3185 2.4150 14 1 1.3478 -2.9661 3.0001 15 7 -0.6849 -3.4058 3.2743 16 6 -0.8703 -2.5049 4.2595 17 8 -0.0577 -1.6217 4.4342 18 6 -2.0877 -2.5945 5.1431 19 6 -2.0563 -1.4615 6.1709 20 1 -1.1390 -1.4985 6.7584 21 6 -3.3054 -1.5107 7.0926 22 6 -3.4434 -0.0171 7.4807 23 8 -3.0689 0.7131 6.3017 24 6 -2.2121 -0.0893 5.4809 25 6 0.2264 -2.3400 1.2682 26 1 -0.4850 0.8400 0.0004 27 1 1.0405 -4.0611 -0.8480 28 1 2.7333 -3.5130 -0.7664 29 1 2.3055 -5.6057 0.5735 30 1 2.9039 -4.2527 1.5638 31 1 0.9832 -5.4043 2.6520 32 1 -0.0269 -5.0411 1.2324 33 1 -1.3348 -4.1121 3.1343 34 1 -2.0918 -3.5543 5.6598 35 1 -2.9867 -2.5064 4.5330 36 1 -3.1214 -2.1294 7.9709 37 1 -4.1829 -1.8575 6.5469 38 1 -2.7710 0.2236 8.3042 39 1 -4.4739 0.2091 7.7544 40 1 -2.6597 -0.2195 4.4957 41 1 -1.2374 0.3892 5.3853 42 1 -0.6767 -2.6411 0.7374 43 1 0.0992 -1.3341 1.6685 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006974241.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:05 Heat of formation + Delta-G solvation = -73.208970 kcal Electronic energy + Delta-G solvation = -23207.752834 eV Core-core repulsion = 19866.911045 eV Total energy + Delta-G solvation = -3340.841789 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.97260 -38.86019 -37.25771 -34.11615 -33.46039 -32.64951 -30.20662 -29.93804 -28.93082 -26.62879 -25.25131 -22.68559 -22.24560 -21.95665 -20.72300 -19.85150 -19.18358 -17.01577 -16.75891 -16.46639 -15.96584 -15.34909 -15.02501 -14.75834 -14.32318 -14.01044 -13.77727 -13.56381 -13.16001 -13.08741 -12.79280 -12.46473 -12.33040 -12.08182 -11.96159 -11.63888 -11.30386 -10.99914 -10.87014 -10.81858 -10.73172 -10.68132 -10.48086 -10.24885 -9.98712 -9.92482 -9.52085 -9.45806 -9.26739 -8.52044 -8.40648 -6.63505 -5.73608 -3.17439 3.04039 3.44163 3.51390 3.52136 3.53476 3.93880 4.38172 4.56088 4.65469 4.85380 4.97864 5.12776 5.24244 5.34142 5.37072 5.42352 5.51898 5.56063 5.59036 5.61641 5.64198 5.72872 5.73181 5.84563 6.08646 6.14319 6.22033 6.23470 6.33854 6.42025 6.50951 6.70484 6.77972 6.95236 6.97174 7.07359 7.31229 7.73774 7.84527 7.95094 8.50201 8.67139 9.25173 9.88929 10.43850 11.34388 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015071 B = 0.005395 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.418144 B = 5189.113576 C = 6722.913118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.008 3.992 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.259 4.259 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.116 3.884 14 H 0.081 0.919 15 N -0.722 5.722 16 C 0.506 3.494 17 O -0.531 6.531 18 C -0.131 4.131 19 C -0.104 4.104 20 H 0.091 0.909 21 C -0.154 4.154 22 C 0.051 3.949 23 O -0.389 6.389 24 C 0.059 3.941 25 C 0.168 3.832 26 H 0.254 0.746 27 H 0.017 0.983 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.392 0.608 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.016 0.984 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.814 -9.720 12.129 16.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.191 4.191 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.388 4.388 8 H 0.083 0.917 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.011 3.989 14 H 0.099 0.901 15 N -0.373 5.373 16 C 0.291 3.709 17 O -0.407 6.407 18 C -0.171 4.171 19 C -0.123 4.123 20 H 0.110 0.890 21 C -0.191 4.191 22 C -0.026 4.026 23 O -0.308 6.308 24 C -0.017 4.017 25 C 0.041 3.959 26 H 0.064 0.936 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.224 0.776 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.034 0.966 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.377 -8.698 12.166 16.258 hybrid contribution 0.108 0.151 -0.064 0.196 sum -6.269 -8.547 12.102 16.087 Atomic orbital electron populations 1.69999 1.05339 1.25695 1.53264 1.25028 0.95259 0.98453 1.00356 0.86381 0.79019 0.83360 0.78091 1.20895 1.21567 1.20866 1.19099 0.92557 0.84808 1.42365 0.91691 1.43955 1.36079 1.01737 1.49363 1.20954 0.97733 0.86904 0.92827 1.21999 0.96996 0.99298 0.98793 1.21669 0.98893 0.96107 0.98684 1.21963 0.87177 0.96805 0.92980 0.90115 1.46098 1.26286 1.31483 1.33390 1.20499 0.87494 0.81879 0.81017 1.90742 1.45601 1.33729 1.70618 1.21668 0.97861 1.00184 0.97381 1.22448 0.98979 0.94736 0.96102 0.89022 1.23345 0.98329 0.97455 0.99987 1.23311 1.00205 0.90185 0.88868 1.88412 1.68134 1.40780 1.33512 1.23237 0.94944 0.89775 0.93724 1.21082 0.88687 0.98859 0.87322 0.93574 0.96466 0.92638 0.92675 0.92154 0.93203 0.92311 0.77557 0.88883 0.88721 0.89969 0.90217 0.92412 0.90058 0.91233 0.90076 0.96612 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 11.20 55.49 0.62 -26.39 16 2 C 0.01 0.24 4.92 -17.43 -0.09 0.15 16 3 Si 0.90 22.80 29.59 -169.99 -5.03 17.77 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.26 -7.34 9.58 -15.06 -0.14 -7.49 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 9 N -0.59 -15.07 2.99 -172.32 -0.52 -15.58 16 10 C 0.14 2.97 6.52 -3.71 -0.02 2.94 16 11 C -0.13 -2.22 6.08 -26.61 -0.16 -2.38 16 12 C -0.12 -1.84 5.35 -26.69 -0.14 -1.98 16 13 C 0.12 2.24 2.60 -67.81 -0.18 2.06 16 14 H 0.08 1.79 7.58 -51.93 -0.39 1.40 16 15 N -0.72 -11.24 5.08 -53.69 -0.27 -11.51 16 16 C 0.51 8.26 7.59 -10.98 -0.08 8.18 16 17 O -0.53 -11.22 14.55 5.56 0.08 -11.14 16 18 C -0.13 -1.48 5.11 -27.88 -0.14 -1.62 16 19 C -0.10 -1.26 2.58 -88.67 -0.23 -1.49 16 20 H 0.09 1.18 8.05 -51.93 -0.42 0.77 16 21 C -0.15 -1.40 6.62 -24.48 -0.16 -1.57 16 22 C 0.05 0.55 7.78 38.18 0.30 0.84 16 23 O -0.39 -5.92 11.36 -35.23 -0.40 -6.32 16 24 C 0.06 0.92 6.38 37.88 0.24 1.16 16 25 C 0.17 4.08 4.88 -3.71 -0.02 4.06 16 26 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.39 4.65 8.60 -40.82 -0.35 4.30 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.95 8.07 -51.93 -0.42 0.53 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.66 8.05 -51.93 -0.42 0.24 16 38 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.13 7.76 -51.93 -0.40 0.72 16 41 H 0.08 1.45 7.72 -51.93 -0.40 1.05 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 2.71 6.06 -51.93 -0.31 2.40 16 LS Contribution 339.52 15.07 5.12 5.12 Total: -1.00 -33.69 339.52 -8.54 -42.23 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.31 Total: 2.96 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -0.83 Total: 2.88 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -0.17 Total: -53.49 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.32 Total: -17.46 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.03 Total: 17.77 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.69 -8.54 -42.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006974241.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.981 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds