Wall clock time and date at job start Tue Mar 31 2020 06:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99838 * 2 1 4 4 H 1.48496 * 109.46994 * 239.99898 * 3 2 1 5 5 H 1.48501 * 109.47495 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46890 * 120.00370 * 3 2 1 7 7 C 1.38805 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00303 * 197.34950 * 7 2 1 9 9 N 1.36938 * 120.00139 * 17.35568 * 7 2 1 10 10 C 1.46930 * 120.63104 * 207.67587 * 9 7 2 11 11 C 1.53188 * 108.77502 * 233.62558 * 10 9 7 12 12 C 1.53039 * 109.31275 * 305.36559 * 11 10 9 13 13 C 1.53038 * 109.53817 * 61.36522 * 12 11 10 14 14 H 1.08997 * 109.49480 * 58.61867 * 13 12 11 15 15 N 1.46500 * 109.49489 * 178.68023 * 13 12 11 16 16 C 1.34779 * 119.99894 * 205.27211 * 15 13 12 17 17 O 1.21281 * 119.99941 * 359.73037 * 16 15 13 18 18 C 1.50704 * 119.99762 * 179.72447 * 16 15 13 19 19 H 1.08998 * 109.47535 * 55.00828 * 18 16 15 20 20 C 1.53086 * 109.48273 * 294.97900 * 18 16 15 21 21 C 1.53176 * 109.16149 * 182.40762 * 20 18 16 22 22 C 1.53184 * 109.03748 * 56.98549 * 21 20 18 23 23 C 1.53091 * 109.15763 * 303.01838 * 22 21 20 24 24 O 1.42903 * 109.47495 * 175.02335 * 18 16 15 25 25 C 1.46925 * 120.63000 * 27.69357 * 9 7 2 26 26 H 0.96999 * 119.99543 * 0.02562 * 1 2 3 27 27 H 1.09008 * 109.58461 * 113.83629 * 10 9 7 28 28 H 1.09001 * 109.70236 * 353.48685 * 10 9 7 29 29 H 1.09000 * 109.49427 * 185.41140 * 11 10 9 30 30 H 1.08996 * 109.49602 * 65.31941 * 11 10 9 31 31 H 1.08995 * 109.46180 * 301.34092 * 12 11 10 32 32 H 1.09006 * 109.44697 * 181.38130 * 12 11 10 33 33 H 0.96999 * 120.00144 * 25.00012 * 15 13 12 34 34 H 1.08996 * 109.52776 * 302.31434 * 20 18 16 35 35 H 1.09001 * 109.51931 * 62.44431 * 20 18 16 36 36 H 1.09002 * 109.54541 * 176.84653 * 21 20 18 37 37 H 1.09001 * 109.54603 * 297.02778 * 21 20 18 38 38 H 1.08995 * 109.51856 * 62.91929 * 22 21 20 39 39 H 1.08992 * 109.52371 * 183.05339 * 22 21 20 40 40 H 1.09006 * 109.48097 * 177.59102 * 23 22 21 41 41 H 1.09000 * 109.48408 * 297.61045 * 23 22 21 42 42 H 1.08998 * 109.58795 * 6.58915 * 25 9 7 43 43 H 1.09000 * 109.58629 * 246.16041 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2233 0.2794 9 7 1.3724 -2.3612 -0.3527 10 6 1.8195 -3.6546 0.1820 11 6 2.0751 -4.6100 -0.9879 12 6 0.8196 -4.6902 -1.8594 13 6 0.5015 -3.3052 -2.4274 14 1 1.3500 -2.9476 -3.0108 15 7 -0.6820 -3.3892 -3.2867 16 6 -0.8655 -2.4872 -4.2712 17 8 -0.0532 -1.6030 -4.4425 18 6 -2.0798 -2.5773 -5.1591 19 1 -2.9800 -2.5807 -4.5444 20 6 -2.0173 -3.8679 -5.9801 21 6 -3.2233 -3.9229 -6.9229 22 6 -3.2245 -2.6715 -7.8063 23 6 -3.2403 -1.4271 -6.9146 24 8 -2.1094 -1.4536 -6.0414 25 6 0.2281 -2.3351 -1.2739 26 1 -0.4849 0.8401 -0.0004 27 1 1.0470 -4.0689 0.8300 28 1 2.7394 -3.5190 0.7507 29 1 2.3145 -5.6011 -0.6026 30 1 2.9089 -4.2398 -1.5843 31 1 -0.0195 -5.0369 -1.2564 32 1 0.9907 -5.3883 -2.6789 33 1 -1.3317 -4.0964 -3.1497 34 1 -1.0973 -3.8838 -6.5644 35 1 -2.0382 -4.7273 -5.3100 36 1 -3.1556 -4.8118 -7.5501 37 1 -4.1423 -3.9587 -6.3377 38 1 -2.3288 -2.6632 -8.4273 39 1 -4.1092 -2.6758 -8.4428 40 1 -3.1981 -0.5333 -7.5371 41 1 -4.1559 -1.4152 -6.3233 42 1 0.0986 -1.3268 -1.6673 43 1 -0.6741 -2.6417 -0.7446 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007123481.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:56 Heat of formation + Delta-G solvation = -72.348353 kcal Electronic energy + Delta-G solvation = -23337.330854 eV Core-core repulsion = 19996.526384 eV Total energy + Delta-G solvation = -3340.804470 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.10240 -38.55873 -37.05870 -34.22153 -33.65970 -32.66617 -31.55751 -29.98026 -28.73965 -25.61940 -25.22713 -24.02355 -22.22446 -21.86945 -20.55957 -19.96668 -19.28585 -17.19930 -16.74894 -16.44779 -15.68790 -15.18315 -15.06974 -14.67272 -14.38169 -14.17152 -13.93840 -13.59480 -13.48409 -12.97656 -12.80411 -12.62918 -12.35775 -12.27518 -11.85435 -11.59300 -11.41031 -11.24987 -10.97484 -10.70869 -10.65902 -10.59776 -10.45285 -10.22543 -9.94244 -9.89679 -9.60106 -9.48563 -9.14637 -8.49875 -8.37889 -6.61851 -5.71169 -3.14414 3.02631 3.14182 3.46996 3.53439 3.56075 4.10358 4.55986 4.59315 4.60557 4.64969 4.79224 4.99989 5.08283 5.27349 5.36858 5.40258 5.44563 5.49979 5.57249 5.58038 5.66146 5.68371 5.72470 5.79523 5.83430 6.05156 6.10819 6.16257 6.35914 6.43824 6.52521 6.72263 6.79742 6.95365 6.98219 7.10553 7.34717 7.76915 7.87009 7.97259 8.52488 8.70830 9.27416 9.91557 10.46044 11.36938 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018246 B = 0.005013 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.216040 B = 5583.754139 C = 6791.154199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.008 3.992 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.259 4.259 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.118 3.882 14 H 0.082 0.918 15 N -0.719 5.719 16 C 0.515 3.485 17 O -0.510 6.510 18 C 0.075 3.925 19 H 0.081 0.919 20 C -0.145 4.145 21 C -0.120 4.120 22 C -0.158 4.158 23 C 0.058 3.942 24 O -0.352 6.352 25 C 0.166 3.834 26 H 0.254 0.746 27 H 0.018 0.982 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.391 0.609 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.051 0.949 42 H 0.095 0.905 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.117 -11.653 -12.166 18.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.192 4.192 3 Si 0.732 3.268 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.388 4.388 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.153 4.153 13 C 0.013 3.987 14 H 0.100 0.900 15 N -0.371 5.371 16 C 0.299 3.701 17 O -0.384 6.384 18 C 0.013 3.987 19 H 0.099 0.901 20 C -0.183 4.183 21 C -0.158 4.158 22 C -0.196 4.196 23 C -0.019 4.019 24 O -0.269 6.269 25 C 0.039 3.961 26 H 0.064 0.936 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.224 0.776 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -7.466 -10.672 -12.265 17.890 hybrid contribution -0.275 0.261 0.009 0.380 sum -7.741 -10.410 -12.256 17.847 Atomic orbital electron populations 1.70004 1.05371 1.25691 1.53255 1.25021 0.95255 0.98485 1.00396 0.86371 0.79005 0.83330 0.78078 1.20828 1.21605 1.20915 1.19108 0.92730 0.84870 1.42117 0.91633 1.43958 1.36049 1.01617 1.49499 1.20949 0.97707 0.86884 0.92849 1.22006 0.96992 0.99319 0.98787 1.21673 0.98917 0.96014 0.98731 1.21977 0.86934 0.96877 0.92874 0.90006 1.45967 1.26561 1.31284 1.33314 1.19990 0.86934 0.82320 0.80884 1.90766 1.44602 1.33111 1.69898 1.21924 0.97601 0.87561 0.91579 0.90114 1.22134 1.00036 0.96890 0.99217 1.21587 0.98006 0.98236 0.97974 1.22220 1.02987 0.95565 0.98826 1.22644 0.88964 0.98308 0.91964 1.88111 1.45050 1.43250 1.50516 1.21101 0.88700 0.99049 0.87235 0.93590 0.96452 0.92641 0.92635 0.92106 0.92258 0.93119 0.77605 0.90434 0.90278 0.91164 0.91537 0.90896 0.90837 0.88514 0.93075 0.88690 0.96505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 11.19 55.49 0.62 -26.80 16 2 C 0.01 0.22 4.91 -17.43 -0.09 0.14 16 3 Si 0.90 23.05 29.59 -169.99 -5.03 18.02 16 4 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.26 -7.42 9.59 -15.06 -0.14 -7.57 16 8 H 0.07 1.83 7.89 -52.49 -0.41 1.41 16 9 N -0.59 -15.25 2.99 -172.32 -0.52 -15.76 16 10 C 0.14 2.99 6.51 -3.71 -0.02 2.97 16 11 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 12 C -0.12 -1.86 5.35 -26.69 -0.14 -2.00 16 13 C 0.12 2.35 2.61 -67.81 -0.18 2.17 16 14 H 0.08 1.87 7.57 -51.93 -0.39 1.48 16 15 N -0.72 -11.86 5.04 -53.69 -0.27 -12.13 16 16 C 0.52 9.54 7.15 -10.98 -0.08 9.46 16 17 O -0.51 -12.37 16.17 -14.30 -0.23 -12.60 16 18 C 0.07 1.05 3.05 -27.84 -0.09 0.97 16 19 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 20 C -0.14 -1.50 5.37 -26.60 -0.14 -1.64 16 21 C -0.12 -0.98 6.03 -26.55 -0.16 -1.14 16 22 C -0.16 -1.36 6.14 -26.59 -0.16 -1.52 16 23 C 0.06 0.63 6.84 37.20 0.25 0.88 16 24 O -0.35 -5.59 9.94 -55.09 -0.55 -6.14 16 25 C 0.17 4.14 4.89 -3.71 -0.02 4.12 16 26 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.39 4.88 8.45 -40.82 -0.34 4.53 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.66 7.99 -51.93 -0.41 0.25 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 2.81 6.04 -51.93 -0.31 2.50 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 338.93 15.07 5.11 5.11 Total: -1.00 -35.12 338.93 -9.34 -44.46 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.35 Total: 1.40 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -1.13 Total: 4.43 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.17 Total: -54.69 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.78 Total: -18.74 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.03 Total: 18.02 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.12 -9.34 -44.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007123481.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.889 kcal (2) G-P(sol) polarization free energy of solvation -35.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds