Wall clock time and date at job start Tue Mar 31 2020 06:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00162 * 2 1 4 4 H 1.48500 * 109.47334 * 269.99841 * 3 2 1 5 5 H 1.48495 * 109.47196 * 30.00231 * 3 2 1 6 6 H 1.48501 * 109.47025 * 150.00066 * 3 2 1 7 7 C 1.38818 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99754 * 197.36107 * 7 2 1 9 9 N 1.36933 * 120.00293 * 17.36720 * 7 2 1 10 10 C 1.46926 * 120.63257 * 27.68051 * 9 7 2 11 11 C 1.53191 * 108.77251 * 126.37110 * 10 9 7 12 12 C 1.53038 * 109.31317 * 54.64226 * 11 10 9 13 13 C 1.53041 * 109.53604 * 298.63258 * 12 11 10 14 14 H 1.09002 * 109.49793 * 301.38075 * 13 12 11 15 15 N 1.46497 * 109.49996 * 181.31523 * 13 12 11 16 16 C 1.34779 * 119.99898 * 154.99331 * 15 13 12 17 17 O 1.21275 * 120.00479 * 0.02562 * 16 15 13 18 18 C 1.50703 * 119.99927 * 180.02562 * 16 15 13 19 19 H 1.09007 * 109.48962 * 304.97743 * 18 16 15 20 20 C 1.53095 * 109.48062 * 65.00116 * 18 16 15 21 21 C 1.53180 * 109.21305 * 177.56004 * 20 18 16 22 22 C 1.53178 * 109.03111 * 303.11562 * 21 20 18 23 23 C 1.53087 * 109.21721 * 56.89055 * 22 21 20 24 24 O 1.42905 * 109.48168 * 184.94996 * 18 16 15 25 25 C 1.46924 * 120.62895 * 207.66344 * 9 7 2 26 26 H 0.97001 * 119.99715 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.57988 * 6.58882 * 10 9 7 28 28 H 1.08993 * 109.70598 * 246.23110 * 10 9 7 29 29 H 1.08991 * 109.49888 * 294.68425 * 11 10 9 30 30 H 1.09002 * 109.52141 * 174.60149 * 11 10 9 31 31 H 1.08999 * 109.46044 * 178.61433 * 12 11 10 32 32 H 1.09002 * 109.46261 * 58.65105 * 12 11 10 33 33 H 0.96999 * 120.00332 * 335.00274 * 15 13 12 34 34 H 1.09000 * 109.52230 * 297.50109 * 20 18 16 35 35 H 1.09000 * 109.52072 * 57.62430 * 20 18 16 36 36 H 1.08995 * 109.54109 * 62.92346 * 21 20 18 37 37 H 1.09002 * 109.53856 * 183.18750 * 21 20 18 38 38 H 1.09000 * 109.47718 * 296.97896 * 22 21 20 39 39 H 1.09006 * 109.52440 * 176.82306 * 22 21 20 40 40 H 1.09002 * 109.48449 * 182.44215 * 23 22 21 41 41 H 1.08995 * 109.48355 * 62.40242 * 23 22 21 42 42 H 1.09006 * 109.58650 * 113.84101 * 25 9 7 43 43 H 1.09000 * 109.59160 * 353.41985 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0533 -1.2237 0.2786 9 7 1.3723 -2.3609 -0.3550 10 6 0.2279 -2.3339 -1.2761 11 6 0.5015 -3.3027 -2.4308 12 6 0.8196 -4.6884 -1.8643 13 6 2.0750 -4.6090 -0.9927 14 1 2.9091 -4.2387 -1.5888 15 7 2.3968 -5.9416 -0.4762 16 6 3.6639 -6.2416 -0.1281 17 8 4.5376 -5.4082 -0.2420 18 6 3.9950 -7.6126 0.4026 19 1 3.3580 -7.8348 1.2588 20 6 3.7590 -8.6551 -0.6935 21 6 4.1552 -10.0381 -0.1675 22 6 5.6154 -9.9977 0.2936 23 6 5.7797 -8.9035 1.3515 24 8 5.3655 -7.6493 0.8060 25 6 1.8195 -3.6549 0.1782 26 1 -0.4850 0.8401 0.0004 27 1 0.0985 -1.3251 -1.6684 28 1 -0.6756 -2.6397 -0.7488 29 1 1.3501 -2.9442 -3.0133 30 1 -0.3788 -3.3647 -3.0706 31 1 0.9906 -5.3855 -2.6846 32 1 -0.0195 -5.0357 -1.2616 33 1 1.6981 -6.6082 -0.3849 34 1 2.7051 -8.6592 -0.9714 35 1 4.3648 -8.4099 -1.5658 36 1 3.5154 -10.3053 0.6735 37 1 4.0428 -10.7761 -0.9617 38 1 6.2596 -9.7804 -0.5584 39 1 5.8891 -10.9622 0.7216 40 1 6.8258 -8.8417 1.6513 41 1 5.1660 -9.1426 2.2201 42 1 1.0470 -4.0699 0.8258 43 1 2.7400 -3.5179 0.7457 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007123484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:59 Heat of formation + Delta-G solvation = -73.348443 kcal Electronic energy + Delta-G solvation = -23020.749408 eV Core-core repulsion = 19679.901571 eV Total energy + Delta-G solvation = -3340.847837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.26973 -38.70368 -37.13842 -34.40300 -33.80013 -32.52508 -31.53118 -30.43380 -28.63027 -25.72031 -25.25477 -24.14162 -22.19938 -21.96652 -20.67277 -20.14053 -19.33834 -17.32844 -16.83206 -16.49306 -15.82087 -15.39523 -15.00087 -14.69280 -14.51784 -14.47556 -13.95140 -13.75756 -13.40411 -13.07390 -12.89732 -12.79373 -12.37678 -12.34056 -11.80728 -11.72099 -11.51665 -11.35062 -11.05803 -10.84899 -10.77991 -10.71205 -10.24072 -10.19124 -9.87695 -9.86506 -9.71961 -9.60817 -9.31382 -8.79371 -8.37018 -6.64772 -5.75237 -3.17169 2.82213 2.95597 3.43383 3.49578 3.52692 3.95800 4.44916 4.50421 4.52166 4.57464 4.67654 4.86740 4.93765 5.15484 5.26654 5.32504 5.39344 5.41087 5.47804 5.55730 5.59152 5.64374 5.69922 5.72789 5.74190 5.95329 6.10021 6.17418 6.25452 6.54189 6.62971 6.69113 6.70868 6.85533 6.93522 7.05052 7.37991 7.67001 7.76351 7.87126 8.45795 8.51843 9.25637 9.87786 10.43278 11.33532 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028600 B = 0.003810 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.801189 B = 7348.121821 C = 8056.069649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.127 3.873 14 H 0.086 0.914 15 N -0.720 5.720 16 C 0.515 3.485 17 O -0.514 6.514 18 C 0.075 3.925 19 H 0.082 0.918 20 C -0.145 4.145 21 C -0.121 4.121 22 C -0.159 4.159 23 C 0.059 3.941 24 O -0.352 6.352 25 C 0.142 3.858 26 H 0.253 0.747 27 H 0.089 0.911 28 H 0.019 0.981 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.394 0.606 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.051 0.949 42 H 0.017 0.983 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.798 -21.680 -1.329 22.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.180 4.180 12 C -0.152 4.152 13 C 0.022 3.978 14 H 0.104 0.896 15 N -0.373 5.373 16 C 0.299 3.701 17 O -0.388 6.388 18 C 0.013 3.987 19 H 0.099 0.901 20 C -0.184 4.184 21 C -0.158 4.158 22 C -0.197 4.197 23 C -0.018 4.018 24 O -0.270 6.270 25 C 0.014 3.986 26 H 0.063 0.937 27 H 0.107 0.893 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.227 0.773 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.069 0.931 42 H 0.035 0.965 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.480 -20.726 -1.405 21.251 hybrid contribution -0.170 0.167 0.108 0.262 sum 4.310 -20.559 -1.297 21.046 Atomic orbital electron populations 1.70041 1.05237 1.25459 1.54198 1.25017 0.95303 0.98393 1.00924 0.86260 0.79202 0.83469 0.77733 1.21408 1.21801 1.20330 1.19262 0.92882 0.84709 1.41110 0.91482 1.44002 1.35597 1.01050 1.50398 1.20837 0.88563 0.98606 0.87855 1.22183 1.00445 0.95185 1.00146 1.21674 0.96705 0.98605 0.98223 1.21755 0.97807 0.81044 0.97180 0.89574 1.46039 1.08696 1.15920 1.66643 1.20050 0.83021 0.88505 0.78514 1.90756 1.46832 1.49393 1.51784 1.21922 0.85717 0.93592 0.97454 0.90075 1.22140 1.02803 0.94606 0.98802 1.21587 0.96367 0.96592 1.01265 1.22224 0.97420 0.99585 1.00424 1.22651 1.00873 0.83592 0.94720 1.88100 1.24511 1.32837 1.81581 1.21193 0.97951 0.86817 0.92643 0.93692 0.89253 0.96319 0.92407 0.92711 0.93099 0.92236 0.77320 0.90216 0.90362 0.91534 0.91047 0.90847 0.90768 0.88437 0.93056 0.96481 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 11.19 55.49 0.62 -25.95 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 22.41 29.59 -169.99 -5.03 17.38 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.25 -7.17 9.58 -15.06 -0.14 -7.32 16 8 H 0.07 1.95 7.89 -52.48 -0.41 1.53 16 9 N -0.59 -15.20 2.99 -172.32 -0.52 -15.72 16 10 C 0.17 3.98 5.31 -3.71 -0.02 3.96 16 11 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 12 C -0.11 -1.83 5.35 -26.69 -0.14 -1.97 16 13 C 0.13 2.32 2.60 -67.81 -0.18 2.14 16 14 H 0.09 1.82 7.58 -51.93 -0.39 1.42 16 15 N -0.72 -10.40 5.04 -53.69 -0.27 -10.67 16 16 C 0.52 8.34 7.15 -10.98 -0.08 8.26 16 17 O -0.51 -11.08 16.17 -14.30 -0.23 -11.31 16 18 C 0.07 0.90 3.06 -27.83 -0.09 0.82 16 19 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 20 C -0.15 -1.31 5.37 -26.59 -0.14 -1.46 16 21 C -0.12 -0.84 6.03 -26.55 -0.16 -1.00 16 22 C -0.16 -1.18 6.13 -26.59 -0.16 -1.34 16 23 C 0.06 0.54 6.84 37.20 0.25 0.79 16 24 O -0.35 -4.92 9.94 -55.09 -0.55 -5.47 16 25 C 0.14 3.16 6.09 -3.71 -0.02 3.13 16 26 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.09 2.39 6.03 -51.93 -0.31 2.07 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.39 4.20 8.45 -40.82 -0.34 3.85 16 34 H 0.08 0.57 7.99 -51.93 -0.41 0.16 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 1.41 7.93 -51.93 -0.41 1.00 16 LS Contribution 338.93 15.07 5.11 5.11 Total: -1.00 -33.95 338.93 -9.34 -43.29 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.35 Total: 0.13 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -1.13 Total: 3.20 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -0.17 Total: -52.34 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.78 Total: -16.78 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.95 -9.34 -43.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007123484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.055 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds