Wall clock time and date at job start Tue Mar 31 2020 06:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00162 * 2 1 4 4 H 1.48500 * 109.47334 * 269.99841 * 3 2 1 5 5 H 1.48495 * 109.47196 * 30.00231 * 3 2 1 6 6 H 1.48501 * 109.47025 * 150.00066 * 3 2 1 7 7 C 1.38818 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99754 * 197.36107 * 7 2 1 9 9 N 1.36933 * 120.00293 * 17.36720 * 7 2 1 10 10 C 1.46926 * 120.63257 * 27.68051 * 9 7 2 11 11 C 1.53191 * 108.77251 * 126.37110 * 10 9 7 12 12 C 1.53038 * 109.31317 * 54.64226 * 11 10 9 13 13 C 1.53041 * 109.53604 * 298.63258 * 12 11 10 14 14 H 1.09002 * 109.49793 * 301.38075 * 13 12 11 15 15 N 1.46497 * 109.49996 * 181.31523 * 13 12 11 16 16 C 1.34779 * 119.99898 * 154.99331 * 15 13 12 17 17 O 1.21275 * 120.00479 * 0.02562 * 16 15 13 18 18 C 1.50703 * 119.99927 * 180.02562 * 16 15 13 19 19 H 1.09007 * 109.48962 * 304.97743 * 18 16 15 20 20 C 1.53095 * 109.48062 * 65.00116 * 18 16 15 21 21 C 1.53180 * 109.21305 * 177.56004 * 20 18 16 22 22 C 1.53178 * 109.03111 * 303.11562 * 21 20 18 23 23 C 1.53087 * 109.21721 * 56.89055 * 22 21 20 24 24 O 1.42905 * 109.48168 * 184.94996 * 18 16 15 25 25 C 1.46924 * 120.62895 * 207.66344 * 9 7 2 26 26 H 0.97001 * 119.99715 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.57988 * 6.58882 * 10 9 7 28 28 H 1.08993 * 109.70598 * 246.23110 * 10 9 7 29 29 H 1.08991 * 109.49888 * 294.68425 * 11 10 9 30 30 H 1.09002 * 109.52141 * 174.60149 * 11 10 9 31 31 H 1.08999 * 109.46044 * 178.61433 * 12 11 10 32 32 H 1.09002 * 109.46261 * 58.65105 * 12 11 10 33 33 H 0.96999 * 120.00332 * 335.00274 * 15 13 12 34 34 H 1.09000 * 109.52230 * 297.50109 * 20 18 16 35 35 H 1.09000 * 109.52072 * 57.62430 * 20 18 16 36 36 H 1.08995 * 109.54109 * 62.92346 * 21 20 18 37 37 H 1.09002 * 109.53856 * 183.18750 * 21 20 18 38 38 H 1.09000 * 109.47718 * 296.97896 * 22 21 20 39 39 H 1.09006 * 109.52440 * 176.82306 * 22 21 20 40 40 H 1.09002 * 109.48449 * 182.44215 * 23 22 21 41 41 H 1.08995 * 109.48355 * 62.40242 * 23 22 21 42 42 H 1.09006 * 109.58650 * 113.84101 * 25 9 7 43 43 H 1.09000 * 109.59160 * 353.41985 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0533 -1.2237 0.2786 9 7 1.3723 -2.3609 -0.3550 10 6 0.2279 -2.3339 -1.2761 11 6 0.5015 -3.3027 -2.4308 12 6 0.8196 -4.6884 -1.8643 13 6 2.0750 -4.6090 -0.9927 14 1 2.9091 -4.2387 -1.5888 15 7 2.3968 -5.9416 -0.4762 16 6 3.6639 -6.2416 -0.1281 17 8 4.5376 -5.4082 -0.2420 18 6 3.9950 -7.6126 0.4026 19 1 3.3580 -7.8348 1.2588 20 6 3.7590 -8.6551 -0.6935 21 6 4.1552 -10.0381 -0.1675 22 6 5.6154 -9.9977 0.2936 23 6 5.7797 -8.9035 1.3515 24 8 5.3655 -7.6493 0.8060 25 6 1.8195 -3.6549 0.1782 26 1 -0.4850 0.8401 0.0004 27 1 0.0985 -1.3251 -1.6684 28 1 -0.6756 -2.6397 -0.7488 29 1 1.3501 -2.9442 -3.0133 30 1 -0.3788 -3.3647 -3.0706 31 1 0.9906 -5.3855 -2.6846 32 1 -0.0195 -5.0357 -1.2616 33 1 1.6981 -6.6082 -0.3849 34 1 2.7051 -8.6592 -0.9714 35 1 4.3648 -8.4099 -1.5658 36 1 3.5154 -10.3053 0.6735 37 1 4.0428 -10.7761 -0.9617 38 1 6.2596 -9.7804 -0.5584 39 1 5.8891 -10.9622 0.7216 40 1 6.8258 -8.8417 1.6513 41 1 5.1660 -9.1426 2.2201 42 1 1.0470 -4.0699 0.8258 43 1 2.7400 -3.5179 0.7457 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007123484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:58 Heat of formation + Delta-G solvation = -96.615266 kcal Electronic energy + Delta-G solvation = -23021.758333 eV Core-core repulsion = 19679.901571 eV Total energy + Delta-G solvation = -3341.856762 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.39921 -39.87062 -38.71396 -35.99204 -34.68666 -34.13634 -32.50954 -32.35464 -30.14404 -27.28428 -26.63708 -24.86726 -23.90288 -23.59351 -21.61660 -21.27099 -20.91564 -18.74197 -18.45451 -17.68094 -16.96950 -16.66291 -16.46802 -16.11919 -15.64153 -15.53018 -15.36547 -15.16500 -14.92911 -14.50838 -14.24409 -14.03232 -13.69777 -13.59410 -13.41143 -13.04812 -12.77238 -12.62657 -12.46234 -12.18185 -12.11697 -11.98332 -11.92752 -11.73860 -11.58737 -11.36857 -11.32632 -10.71134 -10.63275 -10.46000 -10.13266 -8.71680 -7.92666 -5.38045 1.43025 1.44274 1.53689 1.56953 1.83889 2.48116 3.04497 3.21112 3.55950 3.74775 3.78125 3.87843 3.92236 4.03753 4.06940 4.11722 4.21681 4.24960 4.46719 4.49848 4.56380 4.66009 4.80454 4.82518 4.87542 4.91394 5.00989 5.04550 5.10072 5.12364 5.14407 5.18109 5.27055 5.38435 5.45495 5.54661 5.61594 5.75844 6.14253 6.34945 6.60800 7.11053 7.28074 7.80640 8.30007 9.12840 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028600 B = 0.003810 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.801189 B = 7348.121821 C = 8056.069649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.042 4.042 3 Si 0.965 3.035 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.271 4.271 8 H 0.050 0.950 9 N -0.608 5.608 10 C 0.171 3.829 11 C -0.131 4.131 12 C -0.102 4.102 13 C 0.142 3.858 14 H 0.053 0.947 15 N -0.701 5.701 16 C 0.509 3.491 17 O -0.578 6.578 18 C 0.079 3.921 19 H 0.109 0.891 20 C -0.141 4.141 21 C -0.117 4.117 22 C -0.157 4.157 23 C 0.050 3.950 24 O -0.396 6.396 25 C 0.144 3.856 26 H 0.253 0.747 27 H 0.054 0.946 28 H 0.007 0.993 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.418 0.582 34 H 0.105 0.895 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.025 0.975 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.792 -24.559 -1.825 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.238 4.238 3 Si 0.793 3.207 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.401 4.401 8 H 0.068 0.932 9 N -0.332 5.332 10 C 0.046 3.954 11 C -0.170 4.170 12 C -0.140 4.140 13 C 0.036 3.964 14 H 0.071 0.929 15 N -0.354 5.354 16 C 0.296 3.704 17 O -0.457 6.457 18 C 0.019 3.981 19 H 0.126 0.874 20 C -0.179 4.179 21 C -0.154 4.154 22 C -0.194 4.194 23 C -0.026 4.026 24 O -0.315 6.315 25 C 0.017 3.983 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.026 0.974 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.256 0.744 34 H 0.123 0.877 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 3.440 -23.679 -1.903 24.003 hybrid contribution 0.174 1.049 0.333 1.115 sum 3.614 -22.630 -1.570 22.970 Atomic orbital electron populations 1.70160 1.06299 1.26058 1.54765 1.25701 0.96151 1.01138 1.00800 0.85304 0.77964 0.79596 0.77818 1.20773 1.21250 1.20210 1.19397 0.92552 0.86536 1.41652 0.93218 1.44227 1.36081 1.01455 1.51412 1.20731 0.87493 0.98244 0.88949 1.22026 1.01385 0.95359 0.98248 1.21608 0.95685 0.97640 0.99091 1.21257 0.98003 0.81880 0.95294 0.92888 1.45753 1.09166 1.14887 1.65638 1.20998 0.82517 0.89756 0.77167 1.90728 1.48754 1.51730 1.54470 1.21991 0.85679 0.91215 0.99260 0.87359 1.22160 1.04046 0.94752 0.96899 1.21619 0.96012 0.95348 1.02421 1.22216 0.97873 0.99881 0.99440 1.22916 1.01366 0.82523 0.95791 1.88043 1.25542 1.35661 1.82283 1.21226 0.96312 0.86596 0.94176 0.93770 0.92757 0.97449 0.93638 0.89466 0.89208 0.90169 0.74439 0.87699 0.92315 0.89689 0.89387 0.92243 0.88347 0.88191 0.91355 0.95725 0.95690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.71 11.19 21.65 0.24 -55.46 16 2 C -0.04 -2.44 4.91 84.86 0.42 -2.03 16 3 Si 0.97 47.18 29.59 68.60 2.03 49.21 16 4 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 6 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 7 C -0.27 -16.20 9.58 84.04 0.81 -15.40 16 8 H 0.05 3.06 7.89 -2.91 -0.02 3.04 16 9 N -0.61 -32.47 2.99 -699.10 -2.09 -34.57 16 10 C 0.17 8.24 5.31 86.36 0.46 8.70 16 11 C -0.13 -4.69 6.08 30.67 0.19 -4.50 16 12 C -0.10 -2.97 5.35 30.62 0.16 -2.81 16 13 C 0.14 5.11 2.60 45.07 0.12 5.22 16 14 H 0.05 2.30 7.58 -2.39 -0.02 2.28 16 15 N -0.70 -19.11 5.04 -442.17 -2.23 -21.34 16 16 C 0.51 16.39 7.15 87.66 0.63 17.02 16 17 O -0.58 -26.15 16.17 15.97 0.26 -25.89 16 18 C 0.08 1.79 3.06 29.88 0.09 1.88 16 19 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 20 C -0.14 -2.14 5.37 30.69 0.16 -1.97 16 21 C -0.12 -1.19 6.03 30.71 0.19 -1.00 16 22 C -0.16 -1.92 6.13 30.68 0.19 -1.73 16 23 C 0.05 0.84 6.84 72.01 0.49 1.34 16 24 O -0.40 -10.94 9.94 -129.99 -1.29 -12.23 16 25 C 0.14 6.58 6.09 86.36 0.53 7.10 16 26 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 27 H 0.05 2.98 6.03 -2.38 -0.01 2.97 16 28 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.42 7.40 8.45 -92.71 -0.78 6.61 16 34 H 0.10 1.05 7.99 -2.39 -0.02 1.03 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 0.60 8.14 -2.39 -0.02 0.59 16 37 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.02 1.27 7.93 -2.39 -0.02 1.25 16 Total: -1.00 -79.42 338.93 1.54 -77.88 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.20 Total: 10.59 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 4.42 Total: 11.83 kcal Atomic # 7 Polarization: -107.29 SS G_CDS: -4.08 Total: -111.37 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -1.03 Total: -38.12 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -79.42 1.54 -77.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007123484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.739 kcal (2) G-P(sol) polarization free energy of solvation -79.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds