Wall clock time and date at job start Tue Mar 31 2020 06:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99966 * 2 1 4 4 H 1.48492 * 109.47057 * 272.95262 * 3 2 1 5 5 H 1.48505 * 109.46770 * 32.95163 * 3 2 1 6 6 H 1.48501 * 109.47077 * 152.94806 * 3 2 1 7 7 C 1.38810 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99961 * 339.35261 * 7 2 1 9 9 N 1.36936 * 119.99960 * 159.34886 * 7 2 1 10 10 C 1.46928 * 120.63194 * 152.59671 * 9 7 2 11 11 C 1.53187 * 108.77508 * 126.41413 * 10 9 7 12 12 C 1.53040 * 109.31921 * 54.63382 * 11 10 9 13 13 C 1.53038 * 109.53593 * 298.63723 * 12 11 10 14 14 H 1.09007 * 109.52445 * 301.39457 * 13 12 11 15 15 N 1.46496 * 109.50068 * 181.31259 * 13 12 11 16 16 C 1.34777 * 120.00649 * 155.15758 * 15 13 12 17 17 O 1.21287 * 119.99239 * 359.73115 * 16 15 13 18 18 C 1.50695 * 120.00462 * 179.72702 * 16 15 13 19 19 H 1.09002 * 109.47971 * 54.99966 * 18 16 15 20 20 C 1.53098 * 109.47908 * 294.98141 * 18 16 15 21 21 C 1.53179 * 109.16184 * 182.40852 * 20 18 16 22 22 C 1.53185 * 109.03599 * 56.97672 * 21 20 18 23 23 C 1.53087 * 109.16337 * 303.02067 * 22 21 20 24 24 O 1.42900 * 109.42865 * 57.60366 * 23 22 21 25 25 C 1.46927 * 120.62804 * 332.61470 * 9 7 2 26 26 H 0.96995 * 119.99769 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.58638 * 246.20050 * 10 9 7 28 28 H 1.08999 * 109.58131 * 6.62426 * 10 9 7 29 29 H 1.09002 * 109.49480 * 174.58810 * 11 10 9 30 30 H 1.09001 * 109.49887 * 294.68125 * 11 10 9 31 31 H 1.08994 * 109.46545 * 178.61339 * 12 11 10 32 32 H 1.09002 * 109.45517 * 58.64951 * 12 11 10 33 33 H 0.97006 * 119.99522 * 334.88980 * 15 13 12 34 34 H 1.09001 * 109.52029 * 302.30805 * 20 18 16 35 35 H 1.08991 * 109.52086 * 62.43890 * 20 18 16 36 36 H 1.08995 * 109.54570 * 176.84659 * 21 20 18 37 37 H 1.08997 * 109.53985 * 297.02278 * 21 20 18 38 38 H 1.08997 * 109.51726 * 62.92631 * 22 21 20 39 39 H 1.09001 * 109.51779 * 183.11190 * 22 21 20 40 40 H 1.08999 * 109.47922 * 177.59246 * 23 22 21 41 41 H 1.09005 * 109.47996 * 297.62313 * 23 22 21 42 42 H 1.09004 * 109.58415 * 113.80466 * 25 9 7 43 43 H 1.08995 * 109.70721 * 353.44951 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4353 2.0825 -1.3981 5 1 1.4802 2.6338 0.7616 6 1 3.5776 1.4230 0.6368 7 6 2.0103 -1.2021 0.0005 8 1 1.5224 -2.1072 0.3307 9 7 3.3137 -1.2404 -0.4177 10 6 4.2352 -2.2627 0.0965 11 6 4.8755 -2.9907 -1.0895 12 6 5.5292 -1.9660 -2.0195 13 6 4.4624 -1.0101 -2.5583 14 1 3.6997 -1.5783 -3.0909 15 7 5.0838 -0.0491 -3.4728 16 6 4.3447 0.5448 -4.4307 17 8 3.1661 0.2798 -4.5386 18 6 4.9826 1.5380 -5.3674 19 1 5.8429 1.0782 -5.8538 20 6 5.4398 2.7659 -4.5755 21 6 6.0322 3.7958 -5.5423 22 6 4.9843 4.1455 -6.6035 23 6 4.5448 2.8643 -7.3170 24 8 4.0326 1.9376 -6.3574 25 6 3.8173 -0.2596 -1.3889 26 1 -0.4849 0.8400 -0.0004 27 1 5.0116 -1.7867 0.6955 28 1 3.6842 -2.9763 0.7091 29 1 5.6320 -3.6854 -0.7245 30 1 4.1091 -3.5407 -1.6356 31 1 6.0068 -2.4833 -2.8515 32 1 6.2782 -1.3994 -1.4662 33 1 6.0265 0.1628 -3.3864 34 1 4.5869 3.2025 -4.0559 35 1 6.1963 2.4697 -3.8489 36 1 6.3086 4.6954 -4.9924 37 1 6.9157 3.3773 -6.0244 38 1 4.1223 4.6099 -6.1248 39 1 5.4160 4.8362 -7.3279 40 1 3.7680 3.1014 -8.0439 41 1 5.3993 2.4220 -7.8292 42 1 4.5597 0.3797 -0.9111 43 1 2.9923 0.3504 -1.7567 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007123488.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:02 Heat of formation + Delta-G solvation = -66.449266 kcal Electronic energy + Delta-G solvation = -23581.000324 eV Core-core repulsion = 20240.451658 eV Total energy + Delta-G solvation = -3340.548666 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.25073 -38.76569 -37.33663 -34.39044 -33.74698 -32.71537 -31.65188 -30.66013 -29.08598 -25.75095 -25.26707 -24.08776 -22.78141 -21.82510 -20.66491 -20.16870 -19.50279 -17.38254 -16.86772 -16.56124 -15.84524 -15.54884 -15.07236 -14.91232 -14.45732 -14.42876 -14.14346 -13.80781 -13.53650 -13.16085 -12.88675 -12.84989 -12.71804 -12.26416 -12.17279 -11.67241 -11.56359 -11.45487 -11.28665 -11.05849 -10.74326 -10.64528 -10.59369 -10.22531 -10.14124 -9.73553 -9.69141 -9.46678 -9.29430 -8.84621 -8.46365 -6.93119 -5.88778 -3.25104 2.85645 2.96190 3.41987 3.50683 3.54296 3.98326 4.49944 4.57117 4.58173 4.60599 4.73287 4.88550 4.93772 5.07635 5.16669 5.22455 5.27846 5.33566 5.43346 5.50143 5.52130 5.54158 5.65926 5.78157 5.81737 5.84201 5.96806 6.04105 6.05273 6.21917 6.27411 6.45322 6.58101 6.65062 6.66497 6.82170 6.93303 7.02683 7.74852 8.01418 8.39085 8.51737 8.98799 9.78110 10.13730 11.27101 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017807 B = 0.005723 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.019619 B = 4891.578666 C = 5717.772090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.029 3.971 3 Si 0.879 3.121 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.265 4.265 8 H 0.087 0.913 9 N -0.601 5.601 10 C 0.145 3.855 11 C -0.133 4.133 12 C -0.115 4.115 13 C 0.127 3.873 14 H 0.092 0.908 15 N -0.724 5.724 16 C 0.512 3.488 17 O -0.505 6.505 18 C 0.077 3.923 19 H 0.080 0.920 20 C -0.149 4.149 21 C -0.119 4.119 22 C -0.160 4.160 23 C 0.059 3.941 24 O -0.352 6.352 25 C 0.120 3.880 26 H 0.263 0.737 27 H 0.023 0.977 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.393 0.607 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.050 0.950 42 H 0.023 0.977 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.871 4.483 -11.650 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.171 4.171 3 Si 0.710 3.290 4 H -0.214 1.214 5 H -0.231 1.231 6 H -0.197 1.197 7 C -0.393 4.393 8 H 0.104 0.896 9 N -0.325 5.325 10 C 0.020 3.980 11 C -0.172 4.172 12 C -0.154 4.154 13 C 0.022 3.978 14 H 0.110 0.890 15 N -0.378 5.378 16 C 0.295 3.705 17 O -0.377 6.377 18 C 0.016 3.984 19 H 0.098 0.902 20 C -0.187 4.187 21 C -0.157 4.157 22 C -0.198 4.198 23 C -0.017 4.017 24 O -0.270 6.270 25 C -0.007 4.007 26 H 0.073 0.927 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.226 0.774 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.068 0.932 42 H 0.041 0.959 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 16.596 4.292 -11.705 20.758 hybrid contribution 1.200 1.336 -0.013 1.796 sum 17.797 5.628 -11.718 22.039 Atomic orbital electron populations 1.69832 1.05718 1.26563 1.52478 1.25253 0.95187 0.97549 0.99075 0.86968 0.79943 0.85033 0.77062 1.21388 1.23135 1.19712 1.18889 0.85034 0.94805 1.40565 0.89554 1.44282 1.08844 1.33670 1.45698 1.20984 0.92440 0.91346 0.93271 1.22006 0.99646 0.97378 0.98210 1.21676 0.97377 0.97336 0.98973 1.21775 0.95427 0.89907 0.90733 0.88997 1.46027 1.12862 1.45432 1.33429 1.20114 0.87356 0.81679 0.81327 1.90801 1.15219 1.61307 1.70420 1.21891 0.92041 0.94345 0.90173 0.90187 1.22174 1.02235 0.95762 0.98575 1.21574 0.97962 0.99186 0.96931 1.22232 0.99993 0.98522 0.99005 1.22647 0.99540 0.88739 0.90823 1.88109 1.36458 1.62305 1.40122 1.21691 0.97745 0.92386 0.88860 0.92746 0.95932 0.91631 0.92132 0.91606 0.92429 0.92118 0.77361 0.90136 0.90184 0.91000 0.91603 0.90702 0.90736 0.88415 0.93160 0.95891 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -29.08 13.97 55.49 0.78 -28.30 16 2 C 0.03 0.88 5.23 -17.43 -0.09 0.79 16 3 Si 0.88 23.71 24.35 -169.99 -4.14 19.57 16 4 H -0.29 -7.78 6.62 56.52 0.37 -7.41 16 5 H -0.30 -8.21 7.11 56.52 0.40 -7.80 16 6 H -0.27 -7.04 6.64 56.52 0.38 -6.66 16 7 C -0.26 -7.72 10.03 -15.06 -0.15 -7.87 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 9 N -0.60 -14.75 2.77 -172.32 -0.48 -15.23 16 10 C 0.15 2.83 6.52 -3.71 -0.02 2.81 16 11 C -0.13 -2.09 6.08 -26.61 -0.16 -2.25 16 12 C -0.12 -1.69 5.36 -26.69 -0.14 -1.83 16 13 C 0.13 2.36 2.61 -67.81 -0.18 2.18 16 14 H 0.09 2.00 7.58 -51.92 -0.39 1.61 16 15 N -0.72 -11.15 5.04 -53.69 -0.27 -11.42 16 16 C 0.51 9.10 7.15 -10.99 -0.08 9.03 16 17 O -0.50 -11.98 16.17 -14.30 -0.23 -12.21 16 18 C 0.08 1.03 3.05 -27.83 -0.09 0.95 16 19 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 20 C -0.15 -1.69 5.37 -26.59 -0.14 -1.83 16 21 C -0.12 -1.02 6.03 -26.54 -0.16 -1.18 16 22 C -0.16 -1.42 6.14 -26.59 -0.16 -1.58 16 23 C 0.06 0.61 6.84 37.20 0.25 0.86 16 24 O -0.35 -5.39 9.94 -55.09 -0.55 -5.94 16 25 C 0.12 2.76 3.78 -3.71 -0.01 2.75 16 26 H 0.26 8.06 8.31 -40.82 -0.34 7.72 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.39 4.36 8.45 -40.82 -0.34 4.01 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.08 0.74 7.99 -51.93 -0.41 0.33 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.52 7.08 -51.93 -0.37 0.15 16 43 H 0.08 2.13 4.50 -51.93 -0.23 1.90 16 LS Contribution 332.51 15.07 5.01 5.01 Total: -1.00 -36.66 332.51 -8.29 -44.95 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.27 Total: 0.77 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -1.14 Total: 2.81 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.03 Total: -54.96 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.78 Total: -18.16 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -4.14 Total: 19.57 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.66 -8.29 -44.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007123488.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.499 kcal (2) G-P(sol) polarization free energy of solvation -36.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds