Wall clock time and date at job start Tue Mar 31 2020 06:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99578 * 2 1 4 4 H 1.48508 * 109.46916 * 239.99771 * 3 2 1 5 5 H 1.48502 * 109.47411 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47210 * 120.00336 * 3 2 1 7 7 C 1.38811 * 120.00406 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00379 * 197.35856 * 7 2 1 9 9 N 1.36939 * 119.99647 * 17.35032 * 7 2 1 10 10 C 1.46930 * 120.63027 * 207.69846 * 9 7 2 11 11 C 1.53186 * 108.77513 * 233.58843 * 10 9 7 12 12 C 1.53030 * 109.34122 * 305.37939 * 11 10 9 13 13 C 1.53043 * 109.53980 * 61.32018 * 12 11 10 14 14 H 1.08996 * 109.49635 * 58.64930 * 13 12 11 15 15 N 1.46501 * 109.49924 * 178.71640 * 13 12 11 16 16 C 1.34779 * 119.99629 * 204.93468 * 15 13 12 17 17 O 1.21274 * 119.99994 * 359.71906 * 16 15 13 18 18 C 1.50696 * 119.99483 * 179.97438 * 16 15 13 19 19 H 1.08994 * 109.48628 * 304.72622 * 18 16 15 20 20 C 1.53094 * 109.48012 * 64.74910 * 18 16 15 21 21 C 1.53187 * 109.16368 * 177.58928 * 20 18 16 22 22 C 1.53172 * 109.03287 * 303.02024 * 21 20 18 23 23 C 1.53089 * 109.16994 * 56.97734 * 22 21 20 24 24 O 1.42902 * 109.47920 * 184.70074 * 18 16 15 25 25 C 1.46923 * 120.63308 * 27.67633 * 9 7 2 26 26 H 0.97003 * 120.00135 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.58740 * 353.37972 * 10 9 7 28 28 H 1.09002 * 109.58379 * 113.80196 * 10 9 7 29 29 H 1.09000 * 109.50036 * 65.32123 * 11 10 9 30 30 H 1.09006 * 109.49725 * 185.37831 * 11 10 9 31 31 H 1.09000 * 109.43366 * 301.31234 * 12 11 10 32 32 H 1.09003 * 109.48825 * 181.35312 * 12 11 10 33 33 H 0.96994 * 119.99756 * 24.92987 * 15 13 12 34 34 H 1.08994 * 109.52225 * 297.49027 * 20 18 16 35 35 H 1.09003 * 109.52619 * 57.61845 * 20 18 16 36 36 H 1.08995 * 109.53904 * 62.88662 * 21 20 18 37 37 H 1.09001 * 109.54046 * 183.15429 * 21 20 18 38 38 H 1.09004 * 109.51977 * 176.88715 * 22 21 20 39 39 H 1.09006 * 109.52384 * 297.00950 * 22 21 20 40 40 H 1.09004 * 109.47301 * 62.37274 * 23 22 21 41 41 H 1.09000 * 109.48360 * 182.39441 * 23 22 21 42 42 H 1.09002 * 109.58365 * 6.62733 * 25 9 7 43 43 H 1.08999 * 109.59361 * 246.20072 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2785 9 7 1.3724 -2.3609 -0.3547 10 6 1.8192 -3.6547 0.1792 11 6 2.0741 -4.6096 -0.9913 12 6 0.8189 -4.6892 -1.8630 13 6 0.5005 -3.3037 -2.4297 14 1 1.3487 -2.9455 -3.0130 15 7 -0.6834 -3.3869 -3.2886 16 6 -0.8706 -2.4798 -4.2678 17 8 -0.0616 -1.5919 -4.4345 18 6 -2.0881 -2.5658 -5.1516 19 1 -2.1357 -3.5535 -5.6099 20 6 -3.3464 -2.3316 -4.3115 21 6 -4.5745 -2.3606 -5.2266 22 6 -4.4042 -1.3065 -6.3248 23 6 -3.1051 -1.5801 -7.0871 24 8 -2.0066 -1.5699 -6.1732 25 6 0.2277 -2.3340 -1.2754 26 1 -0.4850 0.8401 0.0004 27 1 2.7400 -3.5177 0.7462 28 1 1.0469 -4.0690 0.8272 29 1 2.9079 -4.2395 -1.5878 30 1 2.3139 -5.6009 -0.6065 31 1 -0.0200 -5.0364 -1.2599 32 1 0.9894 -5.3865 -2.6832 33 1 -1.3324 -4.0947 -3.1525 34 1 -3.4337 -3.1160 -3.5599 35 1 -3.2805 -1.3612 -3.8194 36 1 -4.6683 -3.3475 -5.6797 37 1 -5.4686 -2.1390 -4.6439 38 1 -5.2481 -1.3578 -7.0129 39 1 -4.3613 -0.3148 -5.8744 40 1 -3.1661 -2.5550 -7.5709 41 1 -2.9573 -0.8082 -7.8423 42 1 0.0985 -1.3255 -1.6683 43 1 -0.6744 -2.6406 -0.7461 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007123490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:05 Heat of formation + Delta-G solvation = -72.408514 kcal Electronic energy + Delta-G solvation = -23435.284043 eV Core-core repulsion = 20094.476964 eV Total energy + Delta-G solvation = -3340.807078 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.08507 -38.54642 -37.05680 -34.20668 -33.62584 -32.66573 -31.51871 -29.97941 -28.73959 -25.59177 -25.22948 -23.96982 -22.22613 -21.86593 -20.53308 -19.91210 -19.30022 -17.18590 -16.78254 -16.40977 -15.67749 -15.22558 -14.84605 -14.70172 -14.33111 -14.24056 -13.99892 -13.61215 -13.27271 -13.03230 -12.74455 -12.69669 -12.29951 -12.25993 -11.85325 -11.55465 -11.33389 -11.17255 -10.97821 -10.72155 -10.65994 -10.54962 -10.45246 -10.22868 -9.94338 -9.89881 -9.58111 -9.49027 -9.13635 -8.49866 -8.38228 -6.62150 -5.71629 -3.14690 3.03494 3.13554 3.46577 3.52883 3.55702 4.12900 4.57491 4.64096 4.67935 4.70977 4.84746 5.00333 5.09545 5.28327 5.37905 5.43286 5.43747 5.54165 5.57144 5.64842 5.66170 5.72503 5.77130 5.88164 5.94217 6.10741 6.16355 6.17646 6.35876 6.43959 6.52527 6.72240 6.79736 6.95459 6.98097 7.10850 7.34560 7.76553 7.86684 7.97377 8.52044 8.71049 9.27054 9.91201 10.45714 11.36374 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016422 B = 0.005319 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.572271 B = 5262.626905 C = 6322.050670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.902 3.098 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.258 4.258 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.118 3.882 14 H 0.082 0.918 15 N -0.719 5.719 16 C 0.515 3.485 17 O -0.510 6.510 18 C 0.077 3.923 19 H 0.077 0.923 20 C -0.147 4.147 21 C -0.119 4.119 22 C -0.159 4.159 23 C 0.060 3.940 24 O -0.353 6.353 25 C 0.167 3.833 26 H 0.254 0.746 27 H 0.055 0.945 28 H 0.018 0.982 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.391 0.609 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.049 0.951 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.241 -10.334 -10.725 17.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.192 4.192 3 Si 0.732 3.268 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.388 4.388 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.153 4.153 13 C 0.013 3.987 14 H 0.100 0.900 15 N -0.371 5.371 16 C 0.298 3.702 17 O -0.384 6.384 18 C 0.016 3.984 19 H 0.095 0.905 20 C -0.185 4.185 21 C -0.157 4.157 22 C -0.197 4.197 23 C -0.017 4.017 24 O -0.271 6.271 25 C 0.040 3.960 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.224 0.776 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -8.578 -9.365 -10.840 16.697 hybrid contribution -0.297 0.294 0.048 0.421 sum -8.876 -9.071 -10.792 16.659 Atomic orbital electron populations 1.70001 1.05353 1.25653 1.53277 1.25017 0.95260 0.98475 1.00413 0.86374 0.79014 0.83338 0.78084 1.20838 1.21624 1.20912 1.19104 0.92726 0.84882 1.42063 0.91643 1.43960 1.36036 1.01607 1.49524 1.20953 0.97703 0.86878 0.92855 1.22004 0.96995 0.99326 0.98778 1.21671 0.98919 0.96020 0.98734 1.21981 0.86926 0.96879 0.92901 0.90027 1.45967 1.26478 1.31035 1.33661 1.20005 0.86727 0.82400 0.81048 1.90765 1.44930 1.33028 1.69641 1.21903 0.94020 0.92795 0.89729 0.90497 1.22149 0.93485 1.04533 0.98342 1.21579 0.97999 0.99081 0.97022 1.22225 0.98302 1.00539 0.98642 1.22629 0.86090 1.01441 0.91575 1.88100 1.43675 1.54742 1.40533 1.21098 0.88687 0.99042 0.87211 0.93622 0.92633 0.96437 0.92113 0.92635 0.92265 0.93104 0.77609 0.90174 0.89890 0.91761 0.91021 0.90901 0.90695 0.93287 0.88572 0.88685 0.96520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 11.19 55.49 0.62 -26.61 16 2 C 0.01 0.22 4.91 -17.43 -0.09 0.13 16 3 Si 0.90 23.00 29.59 -169.99 -5.03 17.97 16 4 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.26 -7.39 9.59 -15.06 -0.14 -7.53 16 8 H 0.07 1.82 7.89 -52.49 -0.41 1.41 16 9 N -0.59 -15.20 2.99 -172.32 -0.52 -15.71 16 10 C 0.14 2.99 6.52 -3.71 -0.02 2.96 16 11 C -0.13 -2.24 6.08 -26.62 -0.16 -2.40 16 12 C -0.12 -1.86 5.36 -26.69 -0.14 -2.00 16 13 C 0.12 2.34 2.60 -67.80 -0.18 2.17 16 14 H 0.08 1.87 7.58 -51.93 -0.39 1.47 16 15 N -0.72 -11.86 5.04 -53.69 -0.27 -12.13 16 16 C 0.51 9.53 7.15 -10.99 -0.08 9.45 16 17 O -0.51 -12.37 16.17 -14.29 -0.23 -12.60 16 18 C 0.08 1.08 3.05 -27.84 -0.09 1.00 16 19 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 20 C -0.15 -1.76 5.37 -26.59 -0.14 -1.91 16 21 C -0.12 -1.09 6.03 -26.55 -0.16 -1.25 16 22 C -0.16 -1.49 6.14 -26.60 -0.16 -1.66 16 23 C 0.06 0.64 6.84 37.20 0.25 0.89 16 24 O -0.35 -5.57 9.94 -55.09 -0.55 -6.11 16 25 C 0.17 4.13 4.89 -3.71 -0.02 4.11 16 26 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.39 4.88 8.43 -40.82 -0.34 4.54 16 34 H 0.08 0.83 7.97 -51.93 -0.41 0.41 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.10 2.79 6.04 -51.93 -0.31 2.48 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 338.89 15.07 5.11 5.11 Total: -1.00 -34.88 338.89 -9.34 -44.22 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.34 Total: 1.91 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -1.13 Total: 3.96 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.17 Total: -54.45 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.78 Total: -18.72 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.03 Total: 17.97 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.88 -9.34 -44.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007123490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.193 kcal (2) G-P(sol) polarization free energy of solvation -34.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds