Wall clock time and date at job start Tue Mar 31 2020 06:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99578 * 2 1 4 4 H 1.48508 * 109.46916 * 239.99771 * 3 2 1 5 5 H 1.48502 * 109.47411 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47210 * 120.00336 * 3 2 1 7 7 C 1.38811 * 120.00406 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00379 * 197.35856 * 7 2 1 9 9 N 1.36939 * 119.99647 * 17.35032 * 7 2 1 10 10 C 1.46930 * 120.63027 * 207.69846 * 9 7 2 11 11 C 1.53186 * 108.77513 * 233.58843 * 10 9 7 12 12 C 1.53030 * 109.34122 * 305.37939 * 11 10 9 13 13 C 1.53043 * 109.53980 * 61.32018 * 12 11 10 14 14 H 1.08996 * 109.49635 * 58.64930 * 13 12 11 15 15 N 1.46501 * 109.49924 * 178.71640 * 13 12 11 16 16 C 1.34779 * 119.99629 * 204.93468 * 15 13 12 17 17 O 1.21274 * 119.99994 * 359.71906 * 16 15 13 18 18 C 1.50696 * 119.99483 * 179.97438 * 16 15 13 19 19 H 1.08994 * 109.48628 * 304.72622 * 18 16 15 20 20 C 1.53094 * 109.48012 * 64.74910 * 18 16 15 21 21 C 1.53187 * 109.16368 * 177.58928 * 20 18 16 22 22 C 1.53172 * 109.03287 * 303.02024 * 21 20 18 23 23 C 1.53089 * 109.16994 * 56.97734 * 22 21 20 24 24 O 1.42902 * 109.47920 * 184.70074 * 18 16 15 25 25 C 1.46923 * 120.63308 * 27.67633 * 9 7 2 26 26 H 0.97003 * 120.00135 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.58740 * 353.37972 * 10 9 7 28 28 H 1.09002 * 109.58379 * 113.80196 * 10 9 7 29 29 H 1.09000 * 109.50036 * 65.32123 * 11 10 9 30 30 H 1.09006 * 109.49725 * 185.37831 * 11 10 9 31 31 H 1.09000 * 109.43366 * 301.31234 * 12 11 10 32 32 H 1.09003 * 109.48825 * 181.35312 * 12 11 10 33 33 H 0.96994 * 119.99756 * 24.92987 * 15 13 12 34 34 H 1.08994 * 109.52225 * 297.49027 * 20 18 16 35 35 H 1.09003 * 109.52619 * 57.61845 * 20 18 16 36 36 H 1.08995 * 109.53904 * 62.88662 * 21 20 18 37 37 H 1.09001 * 109.54046 * 183.15429 * 21 20 18 38 38 H 1.09004 * 109.51977 * 176.88715 * 22 21 20 39 39 H 1.09006 * 109.52384 * 297.00950 * 22 21 20 40 40 H 1.09004 * 109.47301 * 62.37274 * 23 22 21 41 41 H 1.09000 * 109.48360 * 182.39441 * 23 22 21 42 42 H 1.09002 * 109.58365 * 6.62733 * 25 9 7 43 43 H 1.08999 * 109.59361 * 246.20072 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2785 9 7 1.3724 -2.3609 -0.3547 10 6 1.8192 -3.6547 0.1792 11 6 2.0741 -4.6096 -0.9913 12 6 0.8189 -4.6892 -1.8630 13 6 0.5005 -3.3037 -2.4297 14 1 1.3487 -2.9455 -3.0130 15 7 -0.6834 -3.3869 -3.2886 16 6 -0.8706 -2.4798 -4.2678 17 8 -0.0616 -1.5919 -4.4345 18 6 -2.0881 -2.5658 -5.1516 19 1 -2.1357 -3.5535 -5.6099 20 6 -3.3464 -2.3316 -4.3115 21 6 -4.5745 -2.3606 -5.2266 22 6 -4.4042 -1.3065 -6.3248 23 6 -3.1051 -1.5801 -7.0871 24 8 -2.0066 -1.5699 -6.1732 25 6 0.2277 -2.3340 -1.2754 26 1 -0.4850 0.8401 0.0004 27 1 2.7400 -3.5177 0.7462 28 1 1.0469 -4.0690 0.8272 29 1 2.9079 -4.2395 -1.5878 30 1 2.3139 -5.6009 -0.6065 31 1 -0.0200 -5.0364 -1.2599 32 1 0.9894 -5.3865 -2.6832 33 1 -1.3324 -4.0947 -3.1525 34 1 -3.4337 -3.1160 -3.5599 35 1 -3.2805 -1.3612 -3.8194 36 1 -4.6683 -3.3475 -5.6797 37 1 -5.4686 -2.1390 -4.6439 38 1 -5.2481 -1.3578 -7.0129 39 1 -4.3613 -0.3148 -5.8744 40 1 -3.1661 -2.5550 -7.5709 41 1 -2.9573 -0.8082 -7.8423 42 1 0.0985 -1.3255 -1.6683 43 1 -0.6744 -2.6406 -0.7461 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007123490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:04 Heat of formation + Delta-G solvation = -97.062436 kcal Electronic energy + Delta-G solvation = -23436.353117 eV Core-core repulsion = 20094.476964 eV Total energy + Delta-G solvation = -3341.876153 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.37465 -39.85380 -38.68701 -35.87228 -34.74358 -34.35068 -32.64812 -31.85115 -30.29537 -27.26609 -26.64912 -24.87974 -23.97125 -23.48213 -21.63252 -21.21177 -20.89277 -18.78232 -18.45360 -17.71217 -17.00082 -16.66897 -16.33410 -16.02094 -15.80983 -15.42017 -15.35859 -15.22695 -14.79717 -14.56432 -14.15714 -14.06142 -13.69217 -13.62194 -13.46667 -12.94503 -12.68357 -12.55247 -12.50835 -12.30008 -12.17294 -12.07757 -11.93877 -11.69172 -11.59927 -11.38961 -11.27056 -10.69008 -10.57216 -10.45385 -10.11268 -8.70907 -7.91554 -5.36728 1.37589 1.44754 1.48627 1.59405 1.89002 2.46740 3.04986 3.25138 3.57060 3.75516 3.80850 3.89142 3.96039 4.01849 4.04403 4.14516 4.19748 4.27969 4.46893 4.48382 4.61574 4.63814 4.78967 4.82438 4.84988 4.91990 5.02459 5.08242 5.08886 5.16633 5.20207 5.22291 5.33018 5.36546 5.44629 5.52386 5.60034 5.76601 6.14722 6.34552 6.64147 7.09915 7.32817 7.83861 8.32095 9.12854 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016422 B = 0.005319 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.572271 B = 5262.626905 C = 6322.050670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.050 4.050 3 Si 0.960 3.040 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.267 4.267 8 H 0.068 0.932 9 N -0.611 5.611 10 C 0.135 3.865 11 C -0.122 4.122 12 C -0.105 4.105 13 C 0.131 3.869 14 H 0.046 0.954 15 N -0.701 5.701 16 C 0.505 3.495 17 O -0.580 6.580 18 C 0.085 3.915 19 H 0.121 0.879 20 C -0.145 4.145 21 C -0.113 4.113 22 C -0.159 4.159 23 C 0.051 3.949 24 O -0.398 6.398 25 C 0.178 3.822 26 H 0.246 0.754 27 H 0.054 0.946 28 H 0.024 0.976 29 H 0.049 0.951 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.416 0.584 34 H 0.100 0.900 35 H 0.042 0.958 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.050 0.950 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.039 0.961 43 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.266 -13.495 -11.646 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.245 4.245 3 Si 0.788 3.212 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.189 1.189 7 C -0.397 4.397 8 H 0.086 0.914 9 N -0.335 5.335 10 C 0.010 3.990 11 C -0.162 4.162 12 C -0.143 4.143 13 C 0.025 3.975 14 H 0.064 0.936 15 N -0.355 5.355 16 C 0.291 3.709 17 O -0.459 6.459 18 C 0.024 3.976 19 H 0.138 0.862 20 C -0.183 4.183 21 C -0.150 4.150 22 C -0.196 4.196 23 C -0.024 4.024 24 O -0.317 6.317 25 C 0.051 3.949 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.253 0.747 34 H 0.118 0.882 35 H 0.061 0.939 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.119 0.881 42 H 0.058 0.942 43 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -9.627 -12.603 -11.747 19.736 hybrid contribution 0.029 1.255 0.339 1.301 sum -9.598 -11.348 -11.407 18.736 Atomic orbital electron populations 1.70154 1.06654 1.25613 1.55078 1.25769 0.96050 1.01543 1.01185 0.85453 0.77829 0.79613 0.78335 1.21408 1.22016 1.18878 1.19478 0.93086 0.86355 1.40822 0.91397 1.44253 1.36025 1.02735 1.50441 1.21192 0.97579 0.85502 0.94690 1.21910 0.97027 1.00207 0.97033 1.21643 0.99168 0.93603 0.99895 1.21517 0.86893 0.98219 0.90901 0.93600 1.45741 1.26055 1.31252 1.32407 1.21059 0.87348 0.81145 0.81317 1.90728 1.47680 1.35782 1.71678 1.21949 0.91868 0.94482 0.89295 0.86189 1.22168 0.94128 1.02972 0.99065 1.21603 0.96489 1.00537 0.96412 1.22235 0.98726 0.99464 0.99187 1.22927 0.85221 1.03256 0.91033 1.88046 1.46223 1.55789 1.41631 1.20792 0.88179 0.97461 0.88448 0.94458 0.92712 0.95806 0.93263 0.88194 0.90304 0.89361 0.74701 0.88200 0.93949 0.88735 0.89945 0.87852 0.93099 0.90492 0.88125 0.94201 0.97887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.17 11.19 21.65 0.24 -58.93 16 2 C -0.05 -3.01 4.91 84.86 0.42 -2.60 16 3 Si 0.96 49.05 29.59 68.60 2.03 51.08 16 4 H -0.29 -14.78 7.11 99.48 0.71 -14.08 16 5 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 6 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.27 -15.75 9.59 84.03 0.81 -14.94 16 8 H 0.07 3.86 7.89 -2.91 -0.02 3.84 16 9 N -0.61 -32.27 2.99 -699.10 -2.09 -34.37 16 10 C 0.14 5.53 6.52 86.36 0.56 6.09 16 11 C -0.12 -3.82 6.08 30.67 0.19 -3.63 16 12 C -0.11 -3.05 5.36 30.62 0.16 -2.89 16 13 C 0.13 5.21 2.60 45.07 0.12 5.33 16 14 H 0.05 2.17 7.58 -2.39 -0.02 2.16 16 15 N -0.70 -22.69 5.04 -442.16 -2.23 -24.92 16 16 C 0.50 19.12 7.15 87.66 0.63 19.75 16 17 O -0.58 -29.99 16.17 15.97 0.26 -29.73 16 18 C 0.08 2.30 3.05 29.88 0.09 2.39 16 19 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 20 C -0.15 -3.32 5.37 30.69 0.16 -3.16 16 21 C -0.11 -1.74 6.03 30.71 0.19 -1.55 16 22 C -0.16 -2.65 6.14 30.68 0.19 -2.47 16 23 C 0.05 1.01 6.84 72.01 0.49 1.51 16 24 O -0.40 -12.58 9.94 -129.99 -1.29 -13.87 16 25 C 0.18 9.18 4.89 86.37 0.42 9.60 16 26 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 27 H 0.05 2.20 7.93 -2.39 -0.02 2.18 16 28 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.42 9.26 8.43 -92.71 -0.78 8.48 16 34 H 0.10 1.83 7.97 -2.39 -0.02 1.81 16 35 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.05 1.08 8.14 -2.38 -0.02 1.07 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.04 2.49 6.04 -2.39 -0.01 2.48 16 43 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 Total: -1.00 -84.01 338.89 1.54 -82.46 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.20 Total: 14.85 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: 4.42 Total: 13.42 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -4.08 Total: -118.21 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -1.03 Total: -43.60 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 2.03 Total: 51.08 kcal Total: -84.01 1.54 -82.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007123490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.599 kcal (2) G-P(sol) polarization free energy of solvation -84.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds