Wall clock time and date at job start Tue Mar 31 2020 06:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48498 * 109.47268 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47204 * 300.00472 * 3 2 1 6 6 H 1.48508 * 109.46889 * 60.00276 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 13 13 H 1.09000 * 111.03743 * 153.59413 * 12 11 10 14 14 N 1.46505 * 111.00361 * 277.42908 * 12 11 10 15 15 C 1.34769 * 119.99789 * 198.65299 * 14 12 11 16 16 O 1.21282 * 120.00337 * 359.97438 * 15 14 12 17 17 C 1.50709 * 120.00056 * 179.97438 * 15 14 12 18 18 C 1.53004 * 109.47355 * 179.97438 * 17 15 14 19 19 H 1.09001 * 109.47818 * 304.97836 * 18 17 15 20 20 C 1.53085 * 109.47970 * 184.94504 * 18 17 15 21 21 C 1.53174 * 109.16446 * 182.40874 * 20 18 17 22 22 C 1.53181 * 109.03367 * 56.97917 * 21 20 18 23 23 C 1.53094 * 109.16473 * 303.02014 * 22 21 20 24 24 O 1.42900 * 109.47774 * 64.99934 * 18 17 15 25 25 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 26 26 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 28 28 H 1.08995 * 110.00297 * 298.42768 * 10 9 7 29 29 H 1.09002 * 110.72180 * 219.45147 * 11 10 9 30 30 H 1.08994 * 110.87038 * 96.25177 * 11 10 9 31 31 H 0.97002 * 120.00176 * 18.64700 * 14 12 11 32 32 H 1.09003 * 109.47002 * 299.99929 * 17 15 14 33 33 H 1.09003 * 109.46899 * 59.99768 * 17 15 14 34 34 H 1.09002 * 109.52421 * 302.31117 * 20 18 17 35 35 H 1.09002 * 109.52373 * 62.50222 * 20 18 17 36 36 H 1.09001 * 109.54253 * 297.11371 * 21 20 18 37 37 H 1.09000 * 109.61953 * 176.88924 * 21 20 18 38 38 H 1.09004 * 109.51786 * 183.11686 * 22 21 20 39 39 H 1.08993 * 109.52685 * 62.92918 * 22 21 20 40 40 H 1.09007 * 109.47914 * 297.62543 * 23 22 21 41 41 H 1.08995 * 109.49069 * 177.60095 * 23 22 21 42 42 H 1.09002 * 110.36696 * 85.26297 * 25 9 7 43 43 H 1.08995 * 110.36608 * 323.05133 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 6 0.8538 -4.6579 -0.6131 13 1 0.9879 -5.6872 -0.2805 14 7 0.8605 -4.5765 -2.0759 15 6 1.6903 -5.3620 -2.7906 16 8 2.4317 -6.1359 -2.2229 17 6 1.6968 -5.2788 -4.2954 18 6 2.7214 -6.2670 -4.8564 19 1 3.6956 -6.0751 -4.4066 20 6 2.8172 -6.0962 -6.3746 21 6 3.7995 -7.1288 -6.9359 22 6 3.3315 -8.5318 -6.5371 23 6 3.2158 -8.6086 -5.0124 24 8 2.3113 -7.6020 -4.5534 25 6 1.9335 -3.7312 -0.0005 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5607 -2.0564 -0.8839 28 1 -0.5599 -2.0893 0.9002 29 1 -1.2974 -4.2573 -0.6785 30 1 -0.6320 -4.4259 0.9776 31 1 0.2677 -3.9574 -2.5300 32 1 0.7063 -5.5260 -4.6772 33 1 1.9625 -4.2672 -4.6021 34 1 1.8345 -6.2482 -6.8211 35 1 3.1723 -5.0920 -6.6065 36 1 4.7935 -6.9462 -6.5274 37 1 3.8318 -7.0504 -8.0226 38 1 4.0545 -9.2695 -6.8852 39 1 2.3592 -8.7330 -6.9867 40 1 4.1967 -8.4474 -4.5649 41 1 2.8423 -9.5914 -4.7251 42 1 2.1668 -4.0420 1.0178 43 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010525810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:15 Heat of formation + Delta-G solvation = -71.762564 kcal Electronic energy + Delta-G solvation = -22851.820465 eV Core-core repulsion = 19511.041397 eV Total energy + Delta-G solvation = -3340.779068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.91495 -38.87614 -37.06126 -33.72382 -33.58024 -32.87365 -31.68605 -29.27016 -28.42107 -26.96589 -24.66123 -24.28554 -22.81033 -20.52140 -20.34054 -20.03201 -19.58837 -17.05111 -16.55022 -16.49351 -16.08306 -15.62867 -14.81617 -14.66046 -14.59555 -14.41112 -13.93724 -13.76710 -13.32600 -12.92955 -12.72749 -12.57889 -12.29564 -11.93389 -11.80552 -11.73207 -11.35930 -11.22587 -10.94748 -10.90549 -10.87835 -10.62358 -10.40700 -10.31394 -10.09747 -9.93775 -9.66372 -9.47385 -9.29861 -8.67488 -8.44390 -6.79959 -5.71247 -3.03234 3.08791 3.39409 3.45764 3.47857 3.59653 3.76745 4.50923 4.57846 4.63788 4.68200 4.80661 5.02696 5.12769 5.22571 5.32584 5.37181 5.45210 5.49224 5.51676 5.57840 5.59936 5.64355 5.74429 5.77637 5.82461 5.87182 5.88586 5.96150 6.13747 6.25926 6.42633 6.53341 6.60169 6.74860 7.15133 7.27460 7.55039 7.57625 7.80612 8.01643 8.25729 8.70523 9.22945 9.83200 10.49915 11.41032 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024455 B = 0.003736 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.677255 B = 7493.116058 C = 8145.610018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.176 3.824 11 C -0.153 4.153 12 C 0.130 3.870 13 H 0.085 0.915 14 N -0.708 5.708 15 C 0.515 3.485 16 O -0.540 6.540 17 C -0.136 4.136 18 C 0.108 3.892 19 H 0.066 0.934 20 C -0.152 4.152 21 C -0.122 4.122 22 C -0.157 4.157 23 C 0.063 3.937 24 O -0.366 6.366 25 C 0.126 3.874 26 H 0.251 0.749 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.400 0.600 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.026 0.974 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.267 -14.155 -12.923 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.741 3.259 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.051 3.949 11 C -0.192 4.192 12 C 0.025 3.975 13 H 0.103 0.897 14 N -0.358 5.358 15 C 0.301 3.699 16 O -0.417 6.417 17 C -0.176 4.176 18 C 0.050 3.950 19 H 0.084 0.916 20 C -0.190 4.190 21 C -0.160 4.160 22 C -0.195 4.195 23 C -0.014 4.014 24 O -0.285 6.285 25 C -0.001 4.001 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.235 0.765 32 H 0.116 0.884 33 H 0.125 0.875 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.108 0.892 42 H 0.043 0.957 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.587 -14.521 -12.394 19.265 hybrid contribution 0.361 1.376 -0.375 1.471 sum 2.948 -13.145 -12.769 18.561 Atomic orbital electron populations 1.69960 1.04804 1.24797 1.57630 1.24770 0.95722 0.97548 1.02552 0.86057 0.78747 0.83864 0.77197 1.20578 1.21841 1.21804 1.19109 0.90439 0.82418 1.43081 0.90537 1.44543 1.01463 0.99904 1.87186 1.21195 0.84558 0.87944 1.01170 1.23199 0.95734 0.99999 1.00245 1.22073 0.97194 0.99009 0.79240 0.89677 1.45844 1.41588 1.41262 1.07150 1.20352 0.80158 0.80135 0.89287 1.90673 1.40372 1.38268 1.72387 1.21736 1.01837 1.00612 0.93431 1.21740 0.97576 0.82830 0.92842 0.91639 1.22242 1.00579 0.99861 0.96297 1.21572 0.99025 0.94598 1.00756 1.22220 1.02125 0.97473 0.97660 1.22487 0.94154 0.92127 0.92614 1.87981 1.47296 1.13987 1.79188 1.21925 0.94904 0.86338 0.96976 0.93903 0.93634 0.93838 0.91638 0.91045 0.76549 0.88379 0.87530 0.90975 0.90691 0.91783 0.91581 0.91172 0.91205 0.93281 0.89210 0.95678 0.94017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.73 10.33 55.49 0.57 -26.16 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.22 -6.21 10.28 -15.06 -0.15 -6.37 16 8 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 9 N -0.60 -15.36 3.40 -169.86 -0.58 -15.94 16 10 C 0.18 4.13 5.38 -2.92 -0.02 4.11 16 11 C -0.15 -2.76 6.52 -24.90 -0.16 -2.92 16 12 C 0.13 2.41 3.32 -65.78 -0.22 2.19 16 13 H 0.09 1.55 7.73 -51.93 -0.40 1.15 16 14 N -0.71 -11.86 5.22 -51.73 -0.27 -12.13 16 15 C 0.51 8.58 7.71 -10.98 -0.08 8.49 16 16 O -0.54 -10.82 15.17 -8.86 -0.13 -10.96 16 17 C -0.14 -1.69 5.41 -27.88 -0.15 -1.84 16 18 C 0.11 1.34 2.19 -26.69 -0.06 1.29 16 19 H 0.07 0.91 7.96 -51.93 -0.41 0.49 16 20 C -0.15 -1.43 5.42 -26.60 -0.14 -1.57 16 21 C -0.12 -1.03 6.03 -26.55 -0.16 -1.19 16 22 C -0.16 -1.33 6.14 -26.59 -0.16 -1.49 16 23 C 0.06 0.68 6.84 37.21 0.25 0.93 16 24 O -0.37 -5.10 9.64 -49.65 -0.48 -5.58 16 25 C 0.13 2.75 6.92 -2.53 -0.02 2.74 16 26 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.05 1.15 7.39 -51.93 -0.38 0.77 16 28 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.40 6.19 8.62 -40.82 -0.35 5.84 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 341.61 15.07 5.15 5.15 Total: -1.00 -32.64 341.61 -9.34 -41.98 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -7.41 Total: 2.55 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -1.17 Total: 3.99 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.27 Total: -54.23 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.61 Total: -16.53 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.64 -9.34 -41.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010525810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.780 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds