Wall clock time and date at job start Tue Mar 31 2020 06:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 119.99762 * 2 1 4 4 H 1.48503 * 109.46886 * 274.98921 * 3 2 1 5 5 H 1.48498 * 109.47059 * 34.98697 * 3 2 1 6 6 H 1.48506 * 109.46890 * 154.99098 * 3 2 1 7 7 C 1.38811 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99810 * 187.06219 * 7 2 1 9 9 N 1.36932 * 120.00357 * 7.05830 * 7 2 1 10 10 C 1.47021 * 125.64431 * 354.88345 * 9 7 2 11 11 C 1.54331 * 107.27317 * 178.90054 * 10 9 7 12 12 C 1.55155 * 102.93757 * 337.80879 * 11 10 9 13 13 H 1.09010 * 111.00364 * 277.38865 * 12 11 10 14 14 N 1.46496 * 111.00744 * 153.57766 * 12 11 10 15 15 C 1.34773 * 120.00617 * 158.17307 * 14 12 11 16 16 O 1.21284 * 119.99911 * 0.02562 * 15 14 12 17 17 C 1.50704 * 120.00538 * 180.02562 * 15 14 12 18 18 C 1.52998 * 109.47325 * 180.02562 * 17 15 14 19 19 H 1.09007 * 109.47636 * 55.02379 * 18 17 15 20 20 C 1.53088 * 109.47721 * 175.05500 * 18 17 15 21 21 C 1.53187 * 109.16088 * 177.59172 * 20 18 17 22 22 C 1.53179 * 109.03452 * 303.02203 * 21 20 18 23 23 C 1.53087 * 109.16543 * 56.97789 * 22 21 20 24 24 O 1.42897 * 109.41764 * 302.39371 * 23 22 21 25 25 C 1.47467 * 125.63460 * 174.79472 * 9 7 2 26 26 H 0.97000 * 120.00403 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.88734 * 59.48160 * 10 9 7 28 28 H 1.09004 * 110.01295 * 298.38723 * 10 9 7 29 29 H 1.08999 * 110.72216 * 219.44401 * 11 10 9 30 30 H 1.09003 * 110.71891 * 96.16130 * 11 10 9 31 31 H 0.97005 * 119.99563 * 338.17537 * 14 12 11 32 32 H 1.08998 * 109.46620 * 59.99936 * 17 15 14 33 33 H 1.09000 * 109.46365 * 300.00327 * 17 15 14 34 34 H 1.08999 * 109.52389 * 297.49560 * 20 18 17 35 35 H 1.08996 * 109.52434 * 57.69029 * 20 18 17 36 36 H 1.08995 * 109.54256 * 62.88857 * 21 20 18 37 37 H 1.08997 * 109.54332 * 183.15206 * 21 20 18 38 38 H 1.08999 * 109.51903 * 176.88747 * 22 21 20 39 39 H 1.09004 * 109.52224 * 297.01125 * 22 21 20 40 40 H 1.09000 * 109.48521 * 182.40777 * 23 22 21 41 41 H 1.09001 * 109.47840 * 62.37325 * 23 22 21 42 42 H 1.08998 * 110.34948 * 85.32344 * 25 9 7 43 43 H 1.09005 * 110.40026 * 322.99123 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1074 -1.3948 5 1 1.5042 2.6200 0.8028 6 1 3.5965 1.4121 0.5919 7 6 2.0102 -1.2021 -0.0005 8 1 3.0842 -1.2056 0.1145 9 7 1.3334 -2.3835 -0.1468 10 6 -0.1281 -2.5321 -0.2054 11 6 -0.4285 -4.0329 -0.4033 12 6 0.8921 -4.5743 -1.0116 13 1 0.9279 -4.3985 -2.0869 14 7 1.0651 -5.9972 -0.7091 15 6 1.8729 -6.7559 -1.4760 16 8 2.4571 -6.2606 -2.4164 17 6 2.0504 -8.2198 -1.1651 18 6 3.0113 -8.8437 -2.1792 19 1 3.9469 -8.2845 -2.1851 20 6 3.2882 -10.2987 -1.7917 21 6 4.2024 -10.9339 -2.8440 22 6 3.5391 -10.8147 -4.2196 23 6 3.2523 -9.3398 -4.5132 24 8 2.4231 -8.8025 -3.4809 25 6 1.9502 -3.7170 -0.2734 26 1 -0.4851 0.8400 0.0004 27 1 -0.5255 -1.9607 -1.0442 28 1 -0.5760 -2.1840 0.7254 29 1 -1.2580 -4.1720 -1.0966 30 1 -0.6383 -4.5134 0.5523 31 1 0.5982 -6.3933 0.0433 32 1 1.0851 -8.7228 -1.2215 33 1 2.4599 -8.3308 -0.1611 34 1 3.7772 -10.3296 -0.8181 35 1 2.3484 -10.8487 -1.7461 36 1 5.1609 -10.4151 -2.8553 37 1 4.3585 -11.9857 -2.6043 38 1 4.2074 -11.2147 -4.9821 39 1 2.6047 -11.3761 -4.2233 40 1 2.7415 -9.2526 -5.4721 41 1 4.1912 -8.7873 -4.5497 42 1 2.1562 -4.1345 0.7122 43 1 2.8669 -3.6575 -0.8602 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010525819.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:18 Heat of formation + Delta-G solvation = -70.838490 kcal Electronic energy + Delta-G solvation = -22504.425085 eV Core-core repulsion = 19163.686088 eV Total energy + Delta-G solvation = -3340.738997 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00594 -38.91947 -37.10203 -33.92571 -33.74081 -32.97689 -31.77862 -29.27241 -28.52459 -26.83194 -24.73137 -24.25214 -22.79823 -20.51846 -20.42475 -20.25514 -19.73255 -17.11594 -16.67189 -16.57727 -16.11775 -15.66787 -14.91090 -14.73765 -14.56907 -14.46967 -14.07211 -13.93117 -13.14672 -12.96541 -12.74702 -12.42616 -12.37678 -12.32775 -11.94123 -11.73521 -11.44244 -11.30454 -10.97900 -10.94017 -10.87201 -10.69730 -10.47864 -10.30537 -10.06378 -9.85406 -9.71522 -9.55072 -9.39076 -8.62965 -8.53526 -6.80266 -5.69768 -3.01769 2.94818 3.40678 3.44547 3.49223 3.50878 3.68601 4.47625 4.52857 4.57021 4.60194 4.72254 4.91618 5.03094 5.12607 5.24248 5.32000 5.35269 5.45468 5.48781 5.49232 5.56729 5.63895 5.66918 5.69312 5.79399 5.81068 5.86264 5.88217 6.05263 6.25639 6.38887 6.47006 6.67203 6.76152 7.06091 7.20320 7.55283 7.63113 7.80285 7.87727 8.27915 8.56813 9.24660 9.84915 10.50707 11.42631 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036024 B = 0.003065 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.068835 B = 9134.672640 C = 9440.316098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.149 4.149 12 C 0.129 3.871 13 H 0.094 0.906 14 N -0.721 5.721 15 C 0.511 3.489 16 O -0.529 6.529 17 C -0.135 4.135 18 C 0.106 3.894 19 H 0.066 0.934 20 C -0.151 4.151 21 C -0.122 4.122 22 C -0.157 4.157 23 C 0.063 3.937 24 O -0.366 6.366 25 C 0.130 3.870 26 H 0.252 0.748 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.396 0.604 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.018 0.982 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.489 -23.474 -2.935 23.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.053 3.947 11 C -0.188 4.188 12 C 0.023 3.977 13 H 0.112 0.888 14 N -0.372 5.372 15 C 0.296 3.704 16 O -0.404 6.404 17 C -0.175 4.175 18 C 0.048 3.952 19 H 0.084 0.916 20 C -0.189 4.189 21 C -0.160 4.160 22 C -0.195 4.195 23 C -0.014 4.014 24 O -0.284 6.284 25 C 0.002 3.998 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.229 0.771 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.036 0.964 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.680 -22.791 -3.641 23.372 hybrid contribution 0.420 0.531 0.477 0.828 sum 4.099 -22.261 -3.163 22.855 Atomic orbital electron populations 1.69960 1.04919 1.25057 1.56986 1.24820 0.95724 0.97660 1.02200 0.86107 0.78676 0.83525 0.77536 1.21574 1.21788 1.20625 1.19077 0.91191 0.82485 1.42765 0.90393 1.44405 1.01643 1.00962 1.86115 1.21144 0.84620 0.87790 1.01111 1.23167 0.95823 1.00244 0.99558 1.22257 0.96640 0.78157 1.00612 0.88817 1.46031 1.48113 1.10435 1.32652 1.20435 0.79184 0.88199 0.82538 1.90724 1.46604 1.74219 1.28865 1.21741 1.02279 0.93545 0.99985 1.21751 0.96118 0.93955 0.83377 0.91585 1.22241 1.00714 0.96646 0.99308 1.21574 0.98713 1.00962 0.94719 1.22221 1.01453 0.98244 0.97583 1.22501 0.95498 0.92090 0.91319 1.87988 1.42693 1.82385 1.15368 1.21832 0.95057 0.86653 0.96229 0.93750 0.93167 0.93812 0.91656 0.92094 0.77094 0.88286 0.87697 0.90784 0.90980 0.91743 0.91560 0.91096 0.91189 0.89087 0.93185 0.96438 0.93925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.46 10.36 55.49 0.57 -26.88 16 2 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 3 Si 0.91 22.58 29.56 -169.99 -5.02 17.56 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.23 -6.54 10.26 -15.06 -0.15 -6.70 16 8 H 0.08 2.19 7.84 -52.48 -0.41 1.78 16 9 N -0.60 -16.00 3.40 -170.04 -0.58 -16.58 16 10 C 0.18 4.37 5.38 -3.06 -0.02 4.36 16 11 C -0.15 -2.74 6.59 -24.89 -0.16 -2.91 16 12 C 0.13 2.42 3.37 -65.79 -0.22 2.19 16 13 H 0.09 1.98 7.64 -51.92 -0.40 1.59 16 14 N -0.72 -10.51 5.21 -51.73 -0.27 -10.78 16 15 C 0.51 7.74 7.71 -10.99 -0.08 7.66 16 16 O -0.53 -10.44 15.11 -8.87 -0.13 -10.57 16 17 C -0.14 -1.40 5.41 -27.88 -0.15 -1.55 16 18 C 0.11 1.18 2.19 -26.69 -0.06 1.12 16 19 H 0.07 0.83 7.96 -51.93 -0.41 0.41 16 20 C -0.15 -1.20 5.42 -26.59 -0.14 -1.35 16 21 C -0.12 -0.91 6.03 -26.54 -0.16 -1.07 16 22 C -0.16 -1.23 6.14 -26.59 -0.16 -1.40 16 23 C 0.06 0.65 6.84 37.20 0.25 0.91 16 24 O -0.37 -4.87 9.64 -49.65 -0.48 -5.35 16 25 C 0.13 2.88 6.93 -2.51 -0.02 2.86 16 26 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.05 1.36 7.30 -51.93 -0.38 0.98 16 28 H 0.04 1.16 7.61 -51.93 -0.40 0.77 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.99 8.00 -51.93 -0.42 0.57 16 31 H 0.40 4.42 8.54 -40.82 -0.35 4.07 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 341.37 15.07 5.14 5.14 Total: -1.00 -34.23 341.37 -9.33 -43.56 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.39 Total: 0.10 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -1.18 Total: 3.81 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.27 Total: -54.24 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.61 Total: -15.93 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.23 -9.33 -43.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010525819.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.275 kcal (2) G-P(sol) polarization free energy of solvation -34.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds