Wall clock time and date at job start Tue Mar 31 2020 06:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00187 * 2 1 4 4 H 1.48498 * 109.46953 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47065 * 299.99982 * 3 2 1 6 6 H 1.48498 * 109.47021 * 59.99894 * 3 2 1 7 7 C 1.38819 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00422 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99675 * 359.97438 * 7 2 1 10 10 C 1.47430 * 125.65006 * 359.96046 * 9 7 2 11 11 C 1.55385 * 104.87429 * 204.16511 * 10 9 7 12 12 C 1.55154 * 101.36993 * 323.02069 * 11 10 9 13 13 H 1.08997 * 110.72424 * 153.94763 * 12 11 10 14 14 N 1.46501 * 110.72041 * 277.04276 * 12 11 10 15 15 C 1.34777 * 120.00548 * 202.55821 * 14 12 11 16 16 O 1.21287 * 119.99474 * 0.02562 * 15 14 12 17 17 C 1.50695 * 120.00472 * 179.97438 * 15 14 12 18 18 C 1.52995 * 109.47077 * 179.97438 * 17 15 14 19 19 H 1.09002 * 109.47934 * 55.03114 * 18 17 15 20 20 C 1.53095 * 109.48908 * 175.05375 * 18 17 15 21 21 C 1.53173 * 109.16329 * 177.60249 * 20 18 17 22 22 C 1.53177 * 109.04588 * 303.02563 * 21 20 18 23 23 C 1.53092 * 109.16443 * 56.96276 * 22 21 20 24 24 O 1.42901 * 109.48449 * 295.00382 * 18 17 15 25 25 C 1.47019 * 125.64996 * 180.02562 * 9 7 2 26 26 H 0.97006 * 120.00250 * 0.02562 * 1 2 3 27 27 H 1.08995 * 110.36992 * 323.00340 * 10 9 7 28 28 H 1.09004 * 110.36664 * 85.21490 * 10 9 7 29 29 H 1.09003 * 111.19179 * 204.97848 * 11 10 9 30 30 H 1.09006 * 111.02318 * 80.98495 * 11 10 9 31 31 H 0.97008 * 119.99812 * 22.55244 * 14 12 11 32 32 H 1.09001 * 109.46434 * 60.00302 * 17 15 14 33 33 H 1.08998 * 109.47368 * 300.00313 * 17 15 14 34 34 H 1.09001 * 109.52141 * 297.50480 * 20 18 17 35 35 H 1.09000 * 109.52256 * 57.63295 * 20 18 17 36 36 H 1.08995 * 109.54947 * 62.88633 * 21 20 18 37 37 H 1.09003 * 109.54673 * 183.06310 * 21 20 18 38 38 H 1.09004 * 109.51365 * 297.06592 * 22 21 20 39 39 H 1.08998 * 109.53811 * 176.88037 * 22 21 20 40 40 H 1.09002 * 109.48343 * 182.42096 * 23 22 21 41 41 H 1.08999 * 109.47546 * 62.39689 * 23 22 21 42 42 H 1.09009 * 109.88255 * 59.48669 * 25 9 7 43 43 H 1.09000 * 110.01326 * 298.39952 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1416 -2.5331 0.0008 11 6 -0.4031 -3.9363 0.6151 12 6 0.7783 -4.7524 0.0274 13 1 1.0258 -5.5937 0.6747 14 7 0.4647 -5.2172 -1.3261 15 6 1.1100 -6.2835 -1.8391 16 8 1.9502 -6.8585 -1.1799 17 6 0.7869 -6.7619 -3.2310 18 6 1.6542 -7.9767 -3.5669 19 1 1.5194 -8.7421 -2.8025 20 6 1.2410 -8.5382 -4.9299 21 6 2.1529 -9.7163 -5.2858 22 6 3.6098 -9.2436 -5.2692 23 6 3.9314 -8.6547 -3.8932 24 8 3.0276 -7.5843 -3.6113 25 6 1.9317 -3.7275 -0.0005 26 1 -0.4851 0.8401 -0.0004 27 1 -0.5989 -1.7587 0.6166 28 1 -0.5285 -2.4851 -1.0171 29 1 -1.3599 -4.3396 0.2833 30 1 -0.3514 -3.9025 1.7034 31 1 -0.2077 -4.7576 -1.8531 32 1 0.9882 -5.9636 -3.9454 33 1 -0.2655 -7.0404 -3.2844 34 1 0.2066 -8.8788 -4.8851 35 1 1.3361 -7.7608 -5.6881 36 1 2.0203 -10.5140 -4.5549 37 1 1.8995 -10.0865 -6.2793 38 1 3.7538 -8.4809 -6.0346 39 1 4.2694 -10.0885 -5.4671 40 1 4.9541 -8.2775 -3.8892 41 1 3.8265 -9.4288 -3.1331 42 1 2.5587 -3.8506 0.8826 43 1 2.5293 -3.8665 -0.9015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010525828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:24 Heat of formation + Delta-G solvation = -69.660704 kcal Electronic energy + Delta-G solvation = -22755.285445 eV Core-core repulsion = 19414.597521 eV Total energy + Delta-G solvation = -3340.687924 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.96231 -38.91121 -37.07335 -33.77344 -33.65209 -32.91793 -31.66942 -29.26647 -28.40843 -26.94621 -24.68619 -24.29937 -22.82658 -20.46516 -20.32669 -20.15154 -19.67588 -17.05020 -16.62160 -16.53555 -16.10033 -15.67449 -14.78095 -14.68176 -14.58960 -14.51003 -13.94828 -13.73636 -13.25670 -12.97662 -12.72841 -12.62543 -12.35072 -12.08345 -11.77366 -11.57849 -11.38828 -11.25374 -11.02035 -10.92587 -10.86878 -10.70517 -10.41991 -10.34673 -10.07306 -9.84478 -9.56559 -9.49723 -9.33448 -8.67805 -8.52317 -6.80587 -5.64008 -3.04412 3.01101 3.41396 3.47363 3.49900 3.52532 3.75704 4.51543 4.54105 4.60581 4.65203 4.78041 4.98489 5.08466 5.19001 5.29812 5.36167 5.41916 5.48192 5.52466 5.55236 5.57703 5.61156 5.71279 5.73856 5.81853 5.84896 5.91839 5.93389 6.10690 6.32172 6.41992 6.53037 6.63689 6.80572 7.14788 7.27468 7.45883 7.65772 7.83778 7.94468 8.37054 8.63233 9.24680 9.85311 10.50159 11.40384 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026835 B = 0.003478 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.158082 B = 8047.654912 C = 8489.916086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.217 4.217 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.154 4.154 12 C 0.132 3.868 13 H 0.086 0.914 14 N -0.714 5.714 15 C 0.514 3.486 16 O -0.537 6.537 17 C -0.137 4.137 18 C 0.108 3.892 19 H 0.064 0.936 20 C -0.152 4.152 21 C -0.121 4.121 22 C -0.158 4.158 23 C 0.063 3.937 24 O -0.363 6.363 25 C 0.127 3.873 26 H 0.251 0.749 27 H 0.107 0.893 28 H 0.010 0.990 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.399 0.601 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.048 0.952 42 H 0.029 0.971 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.790 -18.531 -9.435 20.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.346 4.346 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.193 4.193 12 C 0.027 3.973 13 H 0.104 0.896 14 N -0.365 5.365 15 C 0.300 3.700 16 O -0.414 6.414 17 C -0.177 4.177 18 C 0.050 3.950 19 H 0.082 0.918 20 C -0.190 4.190 21 C -0.159 4.159 22 C -0.195 4.195 23 C -0.014 4.014 24 O -0.282 6.282 25 C 0.000 4.000 26 H 0.061 0.939 27 H 0.125 0.875 28 H 0.028 0.972 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.233 0.767 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.047 0.953 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -0.138 -18.527 -8.912 20.560 hybrid contribution 0.077 0.846 -0.489 0.980 sum -0.061 -17.681 -9.401 20.025 Atomic orbital electron populations 1.69790 1.04850 1.24563 1.58174 1.24768 0.95749 0.97662 1.02663 0.85989 0.78719 0.83591 0.77189 1.20538 1.21810 1.21779 1.19157 0.90603 0.82460 1.42371 0.90468 1.44520 1.01832 0.99826 1.86829 1.22019 0.84914 0.92373 0.97974 1.23412 0.95878 0.99202 1.00795 1.21941 0.96643 0.96215 0.82492 0.89589 1.46006 1.42061 1.31141 1.17317 1.20392 0.81238 0.80228 0.88188 1.90684 1.32282 1.57061 1.61352 1.21738 1.00728 0.99435 0.95774 1.21728 0.82491 0.95406 0.95394 0.91786 1.22247 0.99836 0.98667 0.98243 1.21562 0.94870 0.97664 1.01773 1.22224 0.96941 1.01244 0.99135 1.22497 0.93914 0.90449 0.94526 1.88030 1.15179 1.33407 1.91582 1.21687 0.93963 0.85832 0.98477 0.93866 0.87488 0.97167 0.91779 0.90739 0.76698 0.88087 0.87796 0.90850 0.90874 0.91861 0.91583 0.91109 0.91131 0.89082 0.93330 0.95289 0.95538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.84 10.09 55.49 0.56 -26.28 16 2 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.22 -6.20 10.27 -15.06 -0.15 -6.35 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.60 -15.74 3.40 -169.77 -0.58 -16.31 16 10 C 0.15 3.60 5.87 -2.27 -0.01 3.59 16 11 C -0.15 -2.83 6.69 -24.33 -0.16 -2.99 16 12 C 0.13 2.46 3.28 -66.10 -0.22 2.24 16 13 H 0.09 1.59 7.62 -51.93 -0.40 1.19 16 14 N -0.71 -11.56 5.10 -52.03 -0.27 -11.83 16 15 C 0.51 8.27 7.71 -10.99 -0.08 8.18 16 16 O -0.54 -10.59 15.11 -8.83 -0.13 -10.73 16 17 C -0.14 -1.59 5.41 -27.89 -0.15 -1.74 16 18 C 0.11 1.28 2.19 -26.68 -0.06 1.22 16 19 H 0.06 0.81 7.96 -51.93 -0.41 0.39 16 20 C -0.15 -1.33 5.42 -26.59 -0.14 -1.47 16 21 C -0.12 -0.96 6.03 -26.55 -0.16 -1.12 16 22 C -0.16 -1.35 6.14 -26.59 -0.16 -1.51 16 23 C 0.06 0.70 6.84 37.20 0.25 0.95 16 24 O -0.36 -5.24 9.64 -49.61 -0.48 -5.72 16 25 C 0.13 2.88 6.98 -3.07 -0.02 2.86 16 26 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.11 2.87 5.87 -51.93 -0.31 2.56 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.40 5.75 8.63 -40.82 -0.35 5.40 16 32 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.03 0.67 8.14 -51.92 -0.42 0.24 16 43 H 0.03 0.64 8.04 -51.93 -0.42 0.22 16 LS Contribution 340.78 15.07 5.14 5.14 Total: -1.00 -33.20 340.78 -9.30 -42.51 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -7.35 Total: 2.52 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -1.17 Total: 3.37 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.28 Total: -54.42 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.61 Total: -16.45 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.20 -9.30 -42.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010525828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.154 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds