Wall clock time and date at job start Tue Mar 31 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86791 * 120.00113 * 2 1 4 4 H 1.48499 * 109.47350 * 270.00279 * 3 2 1 5 5 H 1.48501 * 109.47284 * 30.00359 * 3 2 1 6 6 H 1.48505 * 109.46977 * 150.00433 * 3 2 1 7 7 C 1.38815 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00043 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00106 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64917 * 359.96353 * 9 7 2 11 11 C 1.54909 * 104.83381 * 204.16150 * 10 9 7 12 12 C 1.55157 * 101.57958 * 322.98989 * 11 10 9 13 13 H 1.09002 * 110.72213 * 277.13898 * 12 11 10 14 14 N 1.46502 * 110.86875 * 153.93745 * 12 11 10 15 15 C 1.34774 * 119.99871 * 157.55098 * 14 12 11 16 16 O 1.21279 * 120.00430 * 359.97438 * 15 14 12 17 17 C 1.50702 * 119.99953 * 180.02562 * 15 14 12 18 18 H 1.08997 * 108.94973 * 59.99196 * 17 15 14 19 19 C 1.46286 * 108.96311 * 178.76465 * 17 15 14 20 20 C 1.54204 * 112.07540 * 181.55866 * 19 17 15 21 21 C 1.50414 * 108.76660 * 282.18517 * 20 19 17 22 22 O 1.44179 * 112.77295 * 92.58000 * 21 20 19 23 23 C 1.44190 * 116.93050 * 318.47250 * 22 21 20 24 24 C 1.50486 * 112.70030 * 318.47491 * 23 22 21 25 25 C 1.47018 * 125.64978 * 180.02562 * 9 7 2 26 26 H 0.96996 * 119.99991 * 359.97438 * 1 2 3 27 27 H 1.08998 * 110.36876 * 323.00467 * 10 9 7 28 28 H 1.09003 * 110.36123 * 85.32149 * 10 9 7 29 29 H 1.09000 * 111.00466 * 204.91585 * 11 10 9 30 30 H 1.08997 * 111.00194 * 81.06198 * 11 10 9 31 31 H 0.96999 * 120.00288 * 337.54449 * 14 12 11 32 32 H 1.09001 * 108.95573 * 302.22295 * 19 17 15 33 33 H 1.09000 * 108.96521 * 60.88412 * 19 17 15 34 34 H 1.09002 * 109.58751 * 41.97068 * 20 19 17 35 35 H 1.09002 * 109.58537 * 162.25457 * 20 19 17 36 36 H 1.08999 * 108.81539 * 213.42614 * 21 20 19 37 37 H 1.08999 * 108.82122 * 331.83049 * 21 20 19 38 38 H 1.08991 * 108.81854 * 79.32816 * 23 22 21 39 39 H 1.09001 * 108.82137 * 197.73832 * 23 22 21 40 40 H 1.08999 * 109.66516 * 332.86481 * 24 23 22 41 41 H 1.08999 * 109.53450 * 212.41722 * 24 23 22 42 42 H 1.08998 * 109.88222 * 59.49315 * 25 9 7 43 43 H 1.09005 * 110.01447 * 298.39894 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5332 0.0008 11 6 -0.4012 -3.9322 0.6132 12 6 0.7783 -4.7524 0.0272 13 1 0.5449 -5.0982 -0.9798 14 7 1.1108 -5.8831 0.8974 15 6 1.7592 -6.9524 0.3948 16 8 2.0671 -6.9788 -0.7780 17 6 2.1007 -8.1158 1.2898 18 1 1.1795 -8.5281 1.7013 19 6 2.7698 -9.1461 0.4956 20 6 3.1182 -10.3908 1.3366 21 6 4.3421 -10.0924 2.1585 22 8 4.0235 -9.5876 3.4709 23 6 2.9506 -8.6283 3.5589 24 6 2.9862 -7.6136 2.4481 25 6 1.9316 -3.7275 -0.0005 26 1 -0.4850 0.8400 0.0004 27 1 -0.5989 -1.7587 0.6165 28 1 -0.5282 -2.4870 -1.0174 29 1 -1.3589 -4.3327 0.2806 30 1 -0.3506 -3.8978 1.7014 31 1 0.8644 -5.8622 1.8354 32 1 2.1141 -9.4438 -0.3227 33 1 3.6878 -8.7318 0.0790 34 1 2.2846 -10.6312 1.9964 35 1 3.3161 -11.2347 0.6756 36 1 4.9253 -11.0070 2.2655 37 1 4.9451 -9.3507 1.6348 38 1 1.9998 -9.1597 3.5203 39 1 3.0228 -8.1065 4.5131 40 1 4.0108 -7.4894 2.0976 41 1 2.6045 -6.6601 2.8131 42 1 2.5585 -3.8507 0.8826 43 1 2.5293 -3.8666 -0.9015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010804473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:30 Heat of formation + Delta-G solvation = -62.693011 kcal Electronic energy + Delta-G solvation = -22911.066179 eV Core-core repulsion = 19570.680397 eV Total energy + Delta-G solvation = -3340.385783 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.58786 -38.80949 -37.25240 -34.81043 -34.13032 -32.70830 -31.72286 -29.21641 -28.08183 -27.08264 -25.75329 -24.42237 -22.05159 -20.81757 -20.55059 -20.16677 -19.65723 -17.64959 -16.99609 -16.81448 -16.29950 -15.59683 -15.54048 -14.69991 -14.55713 -14.14256 -13.98676 -13.84234 -13.51820 -13.26201 -12.97809 -12.66649 -12.42816 -11.96610 -11.73151 -11.63946 -11.49710 -11.21459 -11.10755 -11.04470 -10.91068 -10.81250 -10.67008 -10.50190 -10.13126 -9.85045 -9.76143 -9.64477 -9.48298 -8.76563 -8.67543 -6.86169 -5.67872 -3.09435 2.72262 3.27070 3.39640 3.44653 3.46417 3.54423 4.38196 4.42068 4.47190 4.52517 4.65371 4.74826 4.95918 5.13806 5.17379 5.25955 5.32921 5.36457 5.42554 5.47133 5.53617 5.58495 5.72693 5.74475 5.77757 5.80495 5.85208 5.94714 6.11265 6.17974 6.37110 6.45423 6.52722 6.72606 6.96704 6.98832 7.44781 7.59633 7.68145 7.81489 8.31314 8.38659 9.19687 9.80245 10.44283 11.36406 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029973 B = 0.003450 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.949675 B = 8113.769101 C = 8441.183193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.916 3.084 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.153 3.847 11 C -0.149 4.149 12 C 0.130 3.870 13 H 0.091 0.909 14 N -0.715 5.715 15 C 0.512 3.488 16 O -0.540 6.540 17 C -0.104 4.104 18 H 0.095 0.905 19 C -0.110 4.110 20 C -0.152 4.152 21 C 0.061 3.939 22 O -0.396 6.396 23 C 0.066 3.934 24 C -0.149 4.149 25 C 0.130 3.870 26 H 0.252 0.748 27 H 0.111 0.889 28 H 0.015 0.985 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.397 0.603 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.024 0.976 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.184 -19.701 6.693 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.028 3.972 11 C -0.188 4.188 12 C 0.025 3.975 13 H 0.109 0.891 14 N -0.366 5.366 15 C 0.298 3.702 16 O -0.417 6.417 17 C -0.125 4.125 18 H 0.113 0.887 19 C -0.148 4.148 20 C -0.190 4.190 21 C -0.015 4.015 22 O -0.316 6.316 23 C -0.011 4.011 24 C -0.187 4.187 25 C 0.003 3.997 26 H 0.063 0.937 27 H 0.128 0.872 28 H 0.033 0.967 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.232 0.768 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.042 0.958 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.462 -19.532 5.985 20.576 hybrid contribution 0.153 0.984 0.058 0.998 sum 2.616 -18.548 6.043 19.682 Atomic orbital electron populations 1.69767 1.04893 1.24834 1.57758 1.24785 0.95755 0.97725 1.02406 0.86049 0.78511 0.83189 0.77619 1.21587 1.21622 1.20687 1.19094 0.90555 0.82367 1.42974 0.90479 1.44450 1.01880 0.99668 1.87000 1.21941 0.84875 0.91898 0.98479 1.23320 0.95983 0.99168 1.00364 1.22104 0.96159 0.84898 0.94324 0.89127 1.46097 1.58849 1.18194 1.13413 1.20602 0.77490 0.83588 0.88549 1.90704 1.52987 1.80750 1.17285 1.20464 1.00679 0.94935 0.96433 0.88693 1.20492 1.02232 0.94003 0.98046 1.21936 0.99150 0.98504 0.99393 1.22349 0.96337 0.98909 0.83953 1.88252 1.54587 1.59914 1.28802 1.22308 0.90409 0.89599 0.98745 1.22034 1.01578 0.99912 0.95131 1.21582 0.93932 0.85916 0.98318 0.93687 0.87174 0.96681 0.91771 0.91685 0.76821 0.90770 0.90829 0.90741 0.90134 0.89614 0.92891 0.92926 0.89086 0.89821 0.89606 0.95781 0.95651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.74 10.09 55.49 0.56 -26.18 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 3 Si 0.92 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.22 -6.25 10.27 -15.06 -0.15 -6.41 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 9 N -0.60 -15.64 3.39 -170.07 -0.58 -16.22 16 10 C 0.15 3.67 5.89 -2.53 -0.01 3.65 16 11 C -0.15 -2.68 6.71 -24.58 -0.16 -2.85 16 12 C 0.13 2.34 3.27 -66.10 -0.22 2.12 16 13 H 0.09 1.76 7.62 -51.93 -0.40 1.36 16 14 N -0.72 -10.03 4.85 -52.03 -0.25 -10.28 16 15 C 0.51 7.30 7.12 -10.99 -0.08 7.22 16 16 O -0.54 -9.98 15.49 5.56 0.09 -9.89 16 17 C -0.10 -1.04 2.08 -94.33 -0.20 -1.23 16 18 H 0.10 0.77 7.55 -51.93 -0.39 0.38 16 19 C -0.11 -1.09 3.89 -29.29 -0.11 -1.21 16 20 C -0.15 -1.17 5.61 -27.39 -0.15 -1.32 16 21 C 0.06 0.51 6.26 35.87 0.22 0.74 16 22 O -0.40 -4.04 10.88 -35.23 -0.38 -4.42 16 23 C 0.07 0.54 6.27 35.90 0.22 0.77 16 24 C -0.15 -1.36 4.93 -27.36 -0.13 -1.49 16 25 C 0.13 2.84 6.99 -3.07 -0.02 2.82 16 26 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.11 2.93 5.87 -51.93 -0.31 2.63 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.09 8.01 -51.93 -0.42 0.67 16 31 H 0.40 4.44 7.81 -40.82 -0.32 4.12 16 32 H 0.07 0.80 7.95 -51.93 -0.41 0.38 16 33 H 0.07 0.84 7.44 -51.93 -0.39 0.45 16 34 H 0.07 0.55 7.15 -51.93 -0.37 0.18 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.47 6.66 -51.93 -0.35 0.12 16 38 H 0.05 0.38 6.67 -51.93 -0.35 0.03 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.87 7.14 -51.93 -0.37 0.50 16 41 H 0.09 0.75 7.07 -51.93 -0.37 0.38 16 42 H 0.02 0.52 8.03 -51.93 -0.42 0.11 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 330.33 15.07 4.98 4.98 Total: -1.00 -32.49 330.33 -8.44 -40.93 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.93 Total: 1.60 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -0.90 Total: 2.39 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.27 Total: -52.68 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.30 Total: -14.32 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.49 -8.44 -40.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010804473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.767 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds