Wall clock time and date at job start Tue Mar 31 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99591 * 2 1 4 4 H 1.48504 * 109.46876 * 239.99913 * 3 2 1 5 5 H 1.48503 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47392 * 120.00220 * 3 2 1 7 7 C 1.38807 * 120.00377 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00634 * 207.26310 * 7 2 1 9 9 N 1.36942 * 119.99624 * 27.26897 * 7 2 1 10 10 C 1.47422 * 125.64985 * 13.32566 * 9 7 2 11 11 C 1.55133 * 104.72398 * 155.81668 * 10 9 7 12 12 C 1.55158 * 101.48578 * 37.29389 * 11 10 9 13 13 H 1.08995 * 110.71863 * 82.69254 * 12 11 10 14 14 N 1.46498 * 110.71838 * 205.97109 * 12 11 10 15 15 C 1.34777 * 119.99459 * 199.97299 * 14 12 11 16 16 O 1.21279 * 120.00416 * 0.02562 * 15 14 12 17 17 C 1.50709 * 119.99728 * 179.97438 * 15 14 12 18 18 H 1.09002 * 109.53881 * 300.00396 * 17 15 14 19 19 C 1.54203 * 109.53769 * 179.83879 * 17 15 14 20 20 C 1.46283 * 111.98704 * 162.60348 * 19 17 15 21 21 C 1.54120 * 112.20008 * 61.41547 * 20 19 17 22 22 O 1.40319 * 108.70526 * 280.43934 * 21 20 19 23 23 C 1.43989 * 116.58281 * 95.04015 * 22 21 20 24 24 C 1.50620 * 109.53633 * 60.16732 * 17 15 14 25 25 C 1.47020 * 125.64687 * 193.63224 * 9 7 2 26 26 H 0.97005 * 119.99700 * 185.85251 * 1 2 3 27 27 H 1.08997 * 110.36712 * 274.74794 * 10 9 7 28 28 H 1.09000 * 110.36633 * 37.06764 * 10 9 7 29 29 H 1.08998 * 111.19073 * 279.19220 * 11 10 9 30 30 H 1.08991 * 110.93951 * 155.29051 * 11 10 9 31 31 H 0.96999 * 120.00358 * 19.98131 * 14 12 11 32 32 H 1.09002 * 108.97462 * 283.25415 * 19 17 15 33 33 H 1.09004 * 108.97929 * 42.04411 * 19 17 15 34 34 H 1.09002 * 108.93503 * 182.11318 * 20 19 17 35 35 H 1.09003 * 108.93797 * 300.71395 * 20 19 17 36 36 H 1.09007 * 109.59455 * 40.20507 * 21 20 19 37 37 H 1.09000 * 109.60037 * 160.51289 * 21 20 19 38 38 H 1.09005 * 108.69432 * 78.91116 * 23 22 21 39 39 H 1.08996 * 108.69882 * 197.00880 * 23 22 21 40 40 H 1.08998 * 108.88663 * 330.97299 * 24 17 15 41 41 H 1.09004 * 108.88262 * 89.43399 * 24 17 15 42 42 H 1.09003 * 109.88520 * 300.43980 * 25 9 7 43 43 H 1.08992 * 109.88464 * 61.60433 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0003 -1.2539 0.4290 9 7 1.4397 -2.3223 -0.5423 10 6 0.2379 -2.3470 -1.3957 11 6 0.3681 -3.6531 -2.2226 12 6 0.9847 -4.6202 -1.1776 13 1 0.2094 -5.0424 -0.5385 14 7 1.7474 -5.6812 -1.8400 15 6 2.0201 -6.8258 -1.1827 16 8 1.6338 -6.9775 -0.0432 17 6 2.8042 -7.9175 -1.8643 18 1 2.2707 -8.2474 -2.7558 19 6 2.9791 -9.1068 -0.8984 20 6 3.3584 -10.3322 -1.6015 21 6 4.7073 -10.1900 -2.3332 22 8 4.4956 -9.5015 -3.5374 23 6 4.7170 -8.0789 -3.5137 24 6 4.1617 -7.3944 -2.2543 25 6 1.9207 -3.7003 -0.3655 26 1 -0.4850 -0.8357 0.0857 27 1 -0.6626 -2.3720 -0.7821 28 1 0.2238 -1.4801 -2.0563 29 1 1.0379 -3.5167 -3.0717 30 1 -0.6095 -4.0050 -2.5516 31 1 2.0561 -5.5599 -2.7515 32 1 3.7528 -8.8615 -0.1707 33 1 2.0397 -9.2775 -0.3725 34 1 3.4315 -11.1458 -0.8798 35 1 2.5848 -10.5760 -2.3297 36 1 5.4043 -9.6302 -1.7096 37 1 5.1162 -11.1787 -2.5417 38 1 5.7893 -7.8912 -3.5701 39 1 4.2392 -7.6363 -4.3877 40 1 4.0873 -6.3227 -2.4384 41 1 4.8545 -7.5614 -1.4294 42 1 2.9412 -3.7876 -0.7384 43 1 1.8847 -3.9730 0.6892 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010804474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:33 Heat of formation + Delta-G solvation = -67.626189 kcal Electronic energy + Delta-G solvation = -22947.252205 eV Core-core repulsion = 19606.652504 eV Total energy + Delta-G solvation = -3340.599701 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.50776 -38.97891 -37.45937 -34.89839 -34.30299 -32.98236 -31.80255 -29.19525 -27.89284 -26.98346 -25.97448 -24.30951 -22.03660 -21.16233 -20.60592 -20.24692 -19.62533 -17.68823 -17.33654 -17.11328 -16.30297 -15.85869 -15.31633 -14.85526 -14.61415 -14.22501 -13.92439 -13.77123 -13.63094 -13.34648 -13.17893 -12.92908 -12.46431 -12.30624 -11.89327 -11.76272 -11.48806 -11.22302 -10.97290 -10.91170 -10.82200 -10.74346 -10.70956 -10.50566 -10.15654 -10.01782 -9.87933 -9.54244 -9.49788 -8.86527 -8.41731 -6.96540 -6.09888 -3.12765 2.70801 3.22099 3.50371 3.53280 3.54554 3.71954 4.30827 4.43221 4.56630 4.60372 4.67482 4.74393 4.95617 5.03128 5.15229 5.19130 5.21589 5.22520 5.39144 5.40077 5.44405 5.58385 5.64765 5.66740 5.72672 5.77272 5.83678 5.96530 6.03586 6.09904 6.12107 6.25453 6.41699 6.65460 6.86744 6.92409 6.98498 7.06439 7.63224 7.76479 8.33816 8.47613 9.01738 9.81457 10.34550 11.23583 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032052 B = 0.003447 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.359172 B = 8121.864210 C = 8406.778791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.027 4.027 3 Si 1.066 2.934 4 H -0.294 1.294 5 H -0.285 1.285 6 H -0.293 1.293 7 C -0.336 4.336 8 H 0.066 0.934 9 N -0.604 5.604 10 C 0.146 3.854 11 C -0.141 4.141 12 C 0.132 3.868 13 H 0.092 0.908 14 N -0.717 5.717 15 C 0.515 3.485 16 O -0.538 6.538 17 C -0.102 4.102 18 H 0.102 0.898 19 C -0.103 4.103 20 C -0.149 4.149 21 C 0.064 3.936 22 O -0.385 6.385 23 C 0.065 3.935 24 C -0.151 4.151 25 C 0.130 3.870 26 H 0.269 0.731 27 H 0.029 0.971 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.398 0.602 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.026 0.974 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.542 -19.114 -8.649 22.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.228 4.228 3 Si 0.895 3.105 4 H -0.222 1.222 5 H -0.210 1.210 6 H -0.220 1.220 7 C -0.463 4.463 8 H 0.084 0.916 9 N -0.331 5.331 10 C 0.020 3.980 11 C -0.180 4.180 12 C 0.027 3.973 13 H 0.110 0.890 14 N -0.368 5.368 15 C 0.301 3.699 16 O -0.414 6.414 17 C -0.123 4.123 18 H 0.120 0.880 19 C -0.140 4.140 20 C -0.187 4.187 21 C -0.013 4.013 22 O -0.304 6.304 23 C -0.011 4.011 24 C -0.189 4.189 25 C 0.004 3.996 26 H 0.081 0.919 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.232 0.768 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.044 0.956 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 7.083 -17.559 -7.988 20.550 hybrid contribution 0.454 -1.408 0.063 1.481 sum 7.537 -18.968 -7.925 21.895 Atomic orbital electron populations 1.70794 1.06577 1.30272 1.48598 1.25742 0.96482 1.00946 0.99605 0.83511 0.74777 0.76043 0.76142 1.22151 1.21035 1.22038 1.19778 0.99347 0.87627 1.39578 0.91572 1.44547 1.31076 1.01014 1.56501 1.21576 0.90469 0.94003 0.91952 1.23155 1.00120 0.97097 0.97636 1.22046 0.93865 0.86493 0.94882 0.89045 1.46055 1.56776 1.16487 1.17499 1.20580 0.79843 0.82917 0.86598 1.90702 1.52611 1.80187 1.17908 1.21046 0.96173 0.94834 1.00236 0.87965 1.20432 1.03393 0.92969 0.97247 1.21150 0.98903 0.98326 1.00312 1.22384 0.95960 0.96629 0.86297 1.87453 1.90300 1.19272 1.33348 1.22930 0.99776 0.80579 0.97805 1.21986 0.96096 1.01590 0.99270 1.21605 0.95482 0.85555 0.97004 0.91927 0.95354 0.92406 0.91209 0.91234 0.76807 0.91710 0.90397 0.90940 0.91045 0.92909 0.89866 0.92705 0.89163 0.89846 0.90847 0.95588 0.95487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.07 12.82 55.49 0.71 -27.35 16 2 C -0.03 -0.77 5.09 -17.43 -0.09 -0.86 16 3 Si 1.07 25.54 30.00 -169.99 -5.10 20.45 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.34 -9.69 10.05 -15.06 -0.15 -9.84 16 8 H 0.07 1.91 7.96 -52.49 -0.42 1.49 16 9 N -0.60 -15.65 3.33 -169.94 -0.57 -16.21 16 10 C 0.15 3.37 5.22 -2.41 -0.01 3.36 16 11 C -0.14 -2.42 6.71 -24.46 -0.16 -2.58 16 12 C 0.13 2.34 3.23 -66.09 -0.21 2.13 16 13 H 0.09 1.75 7.70 -51.93 -0.40 1.35 16 14 N -0.72 -9.98 4.75 -52.03 -0.25 -10.23 16 15 C 0.51 7.43 7.07 -10.98 -0.08 7.35 16 16 O -0.54 -10.05 15.37 5.56 0.09 -9.96 16 17 C -0.10 -1.06 2.22 -92.33 -0.21 -1.27 16 18 H 0.10 0.97 7.83 -51.93 -0.41 0.57 16 19 C -0.10 -1.06 4.30 -29.30 -0.13 -1.19 16 20 C -0.15 -1.22 5.47 -29.34 -0.16 -1.38 16 21 C 0.06 0.50 6.38 37.74 0.24 0.74 16 22 O -0.38 -3.59 10.17 -33.68 -0.34 -3.93 16 23 C 0.07 0.51 6.66 37.53 0.25 0.76 16 24 C -0.15 -1.35 4.81 -27.55 -0.13 -1.48 16 25 C 0.13 2.88 6.99 -3.06 -0.02 2.86 16 26 H 0.27 8.20 5.83 -40.82 -0.24 7.96 16 27 H 0.03 0.70 6.84 -51.93 -0.36 0.35 16 28 H 0.06 1.45 7.73 -51.93 -0.40 1.04 16 29 H 0.07 1.09 8.00 -51.93 -0.42 0.68 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.40 4.35 7.98 -40.82 -0.33 4.03 16 32 H 0.06 0.69 7.60 -51.93 -0.39 0.30 16 33 H 0.08 0.93 7.42 -51.93 -0.39 0.54 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 36 H 0.05 0.39 6.98 -51.93 -0.36 0.03 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.75 6.96 -51.93 -0.36 0.39 16 41 H 0.07 0.68 6.84 -51.93 -0.36 0.32 16 42 H 0.03 0.57 8.03 -51.93 -0.42 0.15 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 332.67 15.07 5.01 5.01 Total: -1.00 -33.96 332.67 -8.30 -42.25 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.99 Total: 1.38 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -0.86 Total: -1.40 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.10 Total: -53.79 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.26 Total: -13.90 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.10 Total: 20.45 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.96 -8.30 -42.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010804474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.373 kcal (2) G-P(sol) polarization free energy of solvation -33.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds