Wall clock time and date at job start Tue Mar 31 2020 06:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47361 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46860 * 299.99795 * 3 2 1 6 6 H 1.48500 * 109.47264 * 59.99608 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.47421 * 125.64725 * 359.68754 * 9 7 2 11 11 C 1.55132 * 104.71877 * 155.81751 * 10 9 7 12 12 C 1.55155 * 101.48719 * 37.29608 * 11 10 9 13 13 H 1.09009 * 110.72203 * 82.69426 * 12 11 10 14 14 N 1.46496 * 110.72243 * 205.96709 * 12 11 10 15 15 C 1.34781 * 120.00319 * 199.97557 * 14 12 11 16 16 O 1.21278 * 119.99617 * 0.02562 * 15 14 12 17 17 C 1.50695 * 119.99927 * 179.97438 * 15 14 12 18 18 C 1.52996 * 109.47076 * 179.97438 * 17 15 14 19 19 H 1.09001 * 109.53064 * 305.13215 * 18 17 15 20 20 C 1.53177 * 109.52761 * 185.00227 * 18 17 15 21 21 C 1.53177 * 109.04046 * 183.11988 * 20 18 17 22 22 C 1.53089 * 109.16465 * 56.97953 * 21 20 18 23 23 O 1.42905 * 109.41382 * 302.39225 * 22 21 20 24 24 C 1.42903 * 114.09778 * 61.16139 * 23 22 21 25 25 C 1.47026 * 125.64458 * 179.97438 * 9 7 2 26 26 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 27 27 H 1.09001 * 110.36459 * 274.74494 * 10 9 7 28 28 H 1.09000 * 110.37050 * 37.07344 * 10 9 7 29 29 H 1.08996 * 111.19429 * 279.18793 * 11 10 9 30 30 H 1.09004 * 110.90117 * 155.27414 * 11 10 9 31 31 H 0.97008 * 119.99740 * 19.97304 * 14 12 11 32 32 H 1.08999 * 109.47431 * 299.99982 * 17 15 14 33 33 H 1.09006 * 109.47117 * 60.00349 * 17 15 14 34 34 H 1.09009 * 109.54074 * 302.98598 * 20 18 17 35 35 H 1.08997 * 109.54212 * 63.24634 * 20 18 17 36 36 H 1.09004 * 109.52157 * 176.88922 * 21 20 18 37 37 H 1.09005 * 109.51715 * 297.00791 * 21 20 18 38 38 H 1.08995 * 109.47845 * 62.37427 * 22 21 20 39 39 H 1.09001 * 109.47911 * 182.40474 * 22 21 20 40 40 H 1.09001 * 109.48268 * 178.86102 * 24 23 22 41 41 H 1.08994 * 109.48386 * 58.82045 * 24 23 22 42 42 H 1.09002 * 109.87892 * 300.43506 * 25 9 7 43 43 H 1.09001 * 109.88127 * 61.44933 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 -0.1415 -2.5331 0.0065 11 6 -0.4018 -3.9325 -0.6105 12 6 0.7784 -4.7524 -0.0255 13 1 0.5461 -5.0978 0.9820 14 7 1.1082 -5.8815 -0.8987 15 6 1.8005 -6.9304 -0.4117 16 8 2.1499 -6.9397 0.7496 17 6 2.1393 -8.0920 -1.3099 18 6 2.9227 -9.1391 -0.5158 19 1 3.7954 -8.6723 -0.0591 20 6 3.3753 -10.2611 -1.4553 21 6 4.0901 -11.3405 -0.6366 22 6 3.1487 -11.8454 0.4599 23 8 2.7414 -10.7474 1.2789 24 6 2.0263 -9.7291 0.5762 25 6 1.9318 -3.7275 0.0005 26 1 -0.4849 0.8400 -0.0004 27 1 -0.5229 -2.4889 1.0267 28 1 -0.6020 -1.7576 -0.6055 29 1 -0.3525 -3.8986 -1.6988 30 1 -1.3591 -4.3328 -0.2766 31 1 0.8284 -5.8742 -1.8275 32 1 1.2200 -8.5371 -1.6906 33 1 2.7459 -7.7409 -2.1447 34 1 2.5064 -10.6947 -1.9506 35 1 4.0588 -9.8575 -2.2024 36 1 4.3670 -12.1688 -1.2889 37 1 4.9870 -10.9190 -0.1826 38 1 2.2714 -12.3033 0.0033 39 1 3.6668 -12.5833 1.0724 40 1 1.7360 -8.9423 1.2724 41 1 1.1343 -10.1594 0.1210 42 1 2.5577 -3.8510 -0.8833 43 1 2.5310 -3.8632 0.9009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016276775.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:19 Heat of formation + Delta-G solvation = -70.485357 kcal Electronic energy + Delta-G solvation = -22501.740396 eV Core-core repulsion = 19161.016712 eV Total energy + Delta-G solvation = -3340.723684 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.19278 -39.01220 -37.22608 -34.54313 -34.01263 -32.29845 -31.81983 -29.27718 -28.10287 -26.62351 -25.17309 -24.46901 -22.89963 -20.72137 -20.46045 -20.08097 -19.68005 -17.17405 -16.72261 -16.47003 -16.18778 -15.90976 -15.27424 -14.83677 -14.62247 -14.36058 -14.16923 -14.08370 -13.28889 -12.83806 -12.76260 -12.71109 -12.41321 -12.06409 -11.88953 -11.62675 -11.43876 -11.18012 -11.09585 -10.99256 -10.92213 -10.81332 -10.51659 -10.42278 -10.09455 -9.83497 -9.65680 -9.58814 -9.46309 -8.73564 -8.66899 -6.84548 -5.66667 -3.08218 2.78233 3.33349 3.39948 3.45695 3.48231 3.78727 4.47010 4.48971 4.55039 4.58049 4.70184 4.86430 4.98153 5.18166 5.22935 5.30144 5.35218 5.38401 5.42294 5.44884 5.53102 5.56382 5.65873 5.75830 5.79609 5.80412 5.82412 6.08390 6.16149 6.21452 6.38814 6.47035 6.55672 6.75830 7.01059 7.10140 7.46185 7.61643 7.71096 7.83109 8.33087 8.42457 9.21059 9.81592 10.45652 11.37534 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040456 B = 0.002980 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.938517 B = 9394.910392 C = 9613.260132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.915 3.085 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.153 3.847 11 C -0.149 4.149 12 C 0.131 3.869 13 H 0.090 0.910 14 N -0.717 5.717 15 C 0.507 3.493 16 O -0.537 6.537 17 C -0.136 4.136 18 C -0.107 4.107 19 H 0.089 0.911 20 C -0.118 4.118 21 C -0.156 4.156 22 C 0.057 3.943 23 O -0.380 6.380 24 C 0.062 3.938 25 C 0.129 3.871 26 H 0.252 0.748 27 H 0.015 0.985 28 H 0.111 0.889 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.398 0.602 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.114 0.886 41 H 0.042 0.958 42 H 0.024 0.976 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.088 -21.976 -5.953 22.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.746 3.254 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.188 4.188 12 C 0.026 3.974 13 H 0.108 0.892 14 N -0.368 5.368 15 C 0.293 3.707 16 O -0.414 6.414 17 C -0.176 4.176 18 C -0.126 4.126 19 H 0.108 0.892 20 C -0.156 4.156 21 C -0.193 4.193 22 C -0.020 4.020 23 O -0.298 6.298 24 C -0.015 4.015 25 C 0.002 3.998 26 H 0.063 0.937 27 H 0.033 0.967 28 H 0.129 0.871 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.232 0.768 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.132 0.868 41 H 0.060 0.940 42 H 0.042 0.958 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.350 -21.739 -4.905 22.409 hybrid contribution 0.313 0.856 -0.827 1.231 sum 2.663 -20.882 -5.732 21.818 Atomic orbital electron populations 1.69771 1.04889 1.24691 1.57938 1.24790 0.95761 0.97733 1.02500 0.85976 0.78679 0.83488 0.77243 1.20517 1.21743 1.21709 1.19144 0.90588 0.82369 1.42696 0.90428 1.44474 1.01910 0.99713 1.86963 1.21997 0.84899 0.91948 0.98415 1.23355 0.95954 0.99201 1.00339 1.22088 0.96141 0.84941 0.94229 0.89165 1.46127 1.56699 1.19454 1.14488 1.20642 0.77789 0.83576 0.88692 1.90692 1.52690 1.80068 1.17999 1.21691 1.02176 0.94682 0.99064 1.21550 1.00088 0.94844 0.96123 0.89249 1.21666 1.00422 0.95783 0.97729 1.22181 0.99776 0.99129 0.98256 1.22569 0.97039 0.89297 0.93112 1.87994 1.75108 1.31333 1.35366 1.22883 0.92379 0.90567 0.95640 1.21595 0.93955 0.85872 0.98355 0.93749 0.96661 0.87136 0.91671 0.91794 0.76819 0.88987 0.88575 0.91794 0.91299 0.91007 0.90922 0.93489 0.89182 0.86815 0.93968 0.95803 0.95553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.87 10.08 55.49 0.56 -26.31 16 2 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 3 Si 0.92 22.23 29.55 -169.99 -5.02 17.20 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.22 -6.23 10.27 -15.06 -0.15 -6.38 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.74 3.39 -169.93 -0.58 -16.32 16 10 C 0.15 3.67 5.91 -2.41 -0.01 3.65 16 11 C -0.15 -2.69 6.71 -24.46 -0.16 -2.85 16 12 C 0.13 2.35 3.23 -66.10 -0.21 2.14 16 13 H 0.09 1.74 7.70 -51.92 -0.40 1.34 16 14 N -0.72 -9.97 5.13 -52.03 -0.27 -10.23 16 15 C 0.51 7.05 7.56 -10.99 -0.08 6.97 16 16 O -0.54 -9.64 13.72 5.56 0.08 -9.56 16 17 C -0.14 -1.28 5.18 -27.89 -0.14 -1.42 16 18 C -0.11 -1.11 2.03 -90.48 -0.18 -1.29 16 19 H 0.09 1.13 7.95 -51.93 -0.41 0.72 16 20 C -0.12 -0.93 5.31 -26.55 -0.14 -1.07 16 21 C -0.16 -1.20 6.14 -26.59 -0.16 -1.37 16 22 C 0.06 0.50 6.84 37.20 0.25 0.75 16 23 O -0.38 -4.78 10.77 -35.23 -0.38 -5.16 16 24 C 0.06 0.73 5.84 37.21 0.22 0.94 16 25 C 0.13 2.86 6.99 -3.06 -0.02 2.83 16 26 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.11 2.96 5.86 -51.93 -0.30 2.65 16 29 H 0.06 1.10 8.00 -51.93 -0.42 0.68 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.40 4.36 8.52 -40.82 -0.35 4.01 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.11 1.63 6.03 -51.93 -0.31 1.31 16 41 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.52 8.03 -51.93 -0.42 0.11 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 337.40 15.07 5.08 5.08 Total: -1.00 -32.66 337.40 -8.66 -41.32 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.23 Total: 1.54 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -0.91 Total: 2.45 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.28 Total: -52.87 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.30 Total: -14.72 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.66 -8.66 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016276775.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.167 kcal (2) G-P(sol) polarization free energy of solvation -32.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds