Wall clock time and date at job start Tue Mar 31 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99669 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99806 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99987 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.38809 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00400 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99878 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.88760 * 322.56670 * 10 9 7 12 12 C 1.55149 * 111.00397 * 86.45284 * 10 9 7 13 13 C 1.54327 * 102.94263 * 153.57680 * 12 10 9 14 14 N 1.47023 * 107.26761 * 337.80575 * 13 12 10 15 15 C 1.34777 * 125.64795 * 178.90125 * 14 13 12 16 16 O 1.21279 * 120.00339 * 180.02562 * 15 14 13 17 17 C 1.50704 * 119.99880 * 0.02562 * 15 14 13 18 18 C 1.52995 * 109.47070 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47354 * 179.97438 * 18 17 15 20 20 H 1.09003 * 109.86709 * 53.99475 * 19 18 17 21 21 C 1.54101 * 109.88121 * 174.99942 * 19 18 17 22 22 C 1.54803 * 104.18631 * 121.45788 * 21 19 18 23 23 C 1.54997 * 102.09649 * 20.88283 * 22 21 19 24 24 O 1.43746 * 109.88235 * 292.83442 * 19 18 17 25 25 C 1.47417 * 108.70430 * 358.93825 * 14 13 12 26 26 H 0.97001 * 119.99542 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99707 * 0.02562 * 9 7 2 28 28 H 1.09006 * 110.72092 * 271.93324 * 12 10 9 29 29 H 1.08996 * 110.72546 * 35.21327 * 12 10 9 30 30 H 1.09004 * 109.88593 * 97.22155 * 13 12 10 31 31 H 1.08996 * 109.88393 * 218.38974 * 13 12 10 32 32 H 1.09004 * 109.46925 * 299.99889 * 17 15 14 33 33 H 1.08998 * 109.47084 * 60.00327 * 17 15 14 34 34 H 1.08998 * 109.47046 * 299.99929 * 18 17 15 35 35 H 1.09008 * 109.47193 * 60.00133 * 18 17 15 36 36 H 1.09006 * 110.48769 * 240.13435 * 21 19 18 37 37 H 1.09000 * 110.48661 * 2.78115 * 21 19 18 38 38 H 1.09003 * 110.90948 * 139.08229 * 22 21 19 39 39 H 1.09000 * 110.90786 * 262.68161 * 22 21 19 40 40 H 1.08994 * 110.62038 * 81.47328 * 23 22 21 41 41 H 1.08997 * 110.62061 * 204.32203 * 23 22 21 42 42 H 1.08998 * 110.37473 * 265.28912 * 25 14 13 43 43 H 1.09003 * 110.36713 * 142.97072 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 3.1039 1.6965 1.2125 6 1 1.2851 2.7465 -0.0006 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9529 -3.5889 -0.6185 12 6 2.4139 -4.0935 1.4462 13 6 2.5176 -5.6288 1.3278 14 7 1.7450 -6.0282 0.1424 15 6 1.6053 -7.2878 -0.3163 16 8 0.9418 -7.5017 -1.3087 17 6 2.2737 -8.4305 0.4039 18 6 1.9584 -9.7422 -0.3177 19 6 2.6375 -10.9023 0.4131 20 1 2.3534 -10.8942 1.4655 21 6 2.2252 -12.2403 -0.2306 22 6 3.5649 -12.8769 -0.6737 23 6 4.5893 -12.1336 0.2210 24 8 4.0651 -10.7900 0.2883 25 6 1.1492 -4.8228 -0.4619 26 1 -0.4849 -0.8401 -0.0004 27 1 0.3556 -2.3881 -0.0002 28 1 3.3677 -3.6653 1.7548 29 1 1.6214 -3.8129 2.1399 30 1 3.5605 -5.9217 1.2066 31 1 2.0996 -6.0983 2.2182 32 1 3.3521 -8.2721 0.4145 33 1 1.9036 -8.4807 1.4279 34 1 0.8801 -9.9008 -0.3287 35 1 2.3288 -9.6918 -1.3416 36 1 1.7235 -12.8762 0.4990 37 1 1.5817 -12.0665 -1.0930 38 1 3.5738 -13.9473 -0.4684 39 1 3.7574 -12.6831 -1.7290 40 1 4.6273 -12.5810 1.2141 41 1 5.5771 -12.1400 -0.2397 42 1 0.1322 -4.6785 -0.0972 43 1 1.1556 -4.9006 -1.5491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018544462.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:33 Heat of formation + Delta-G solvation = -78.699033 kcal Electronic energy + Delta-G solvation = -22012.429334 eV Core-core repulsion = 18671.349478 eV Total energy + Delta-G solvation = -3341.079856 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.08616 -39.51669 -37.40042 -34.41404 -33.71590 -32.39424 -31.55856 -29.48982 -29.09001 -27.39456 -24.60942 -23.31794 -22.77705 -22.00344 -21.13735 -20.24201 -18.94915 -17.49012 -17.07924 -16.70922 -16.31164 -15.85670 -15.68107 -15.19967 -14.64215 -14.42142 -13.96832 -13.68628 -13.29343 -13.19061 -13.16106 -12.72261 -12.60829 -12.15542 -12.06781 -11.94675 -11.70576 -11.61255 -11.23940 -11.13992 -11.03976 -10.91633 -10.71983 -10.65802 -10.26382 -10.00795 -9.97319 -9.67469 -9.23441 -8.96956 -8.43942 -7.12618 -6.15600 -3.17423 2.78058 3.13225 3.49979 3.53259 3.54964 3.70866 4.21093 4.33756 4.55622 4.59547 4.63151 4.73833 4.87571 4.99763 4.99936 5.05990 5.24520 5.27614 5.32639 5.34188 5.40162 5.43396 5.48711 5.54960 5.59797 5.61500 5.70442 5.73429 5.89629 5.92461 5.99008 6.08031 6.17400 6.31210 6.50445 6.55078 6.62045 6.83538 7.71823 7.75255 8.31125 8.69698 9.14173 10.00763 10.14353 11.32359 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.047435 B = 0.002641 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.134773 B =10601.104147 C =10885.521618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.043 4.043 3 Si 1.081 2.919 4 H -0.294 1.294 5 H -0.294 1.294 6 H -0.285 1.285 7 C -0.335 4.335 8 H 0.066 0.934 9 N -0.727 5.727 10 C 0.177 3.823 11 H 0.064 0.936 12 C -0.154 4.154 13 C 0.102 3.898 14 N -0.615 5.615 15 C 0.525 3.475 16 O -0.550 6.550 17 C -0.132 4.132 18 C -0.101 4.101 19 C 0.075 3.925 20 H 0.069 0.931 21 C -0.153 4.153 22 C -0.156 4.156 23 C 0.045 3.955 24 O -0.372 6.372 25 C 0.098 3.902 26 H 0.256 0.744 27 H 0.369 0.631 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.499 -25.271 3.549 26.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.240 4.240 3 Si 0.912 3.088 4 H -0.222 1.222 5 H -0.222 1.222 6 H -0.210 1.210 7 C -0.466 4.466 8 H 0.084 0.916 9 N -0.369 5.369 10 C 0.065 3.935 11 H 0.082 0.918 12 C -0.195 4.195 13 C -0.022 4.022 14 N -0.349 5.349 15 C 0.314 3.686 16 O -0.428 6.428 17 C -0.172 4.172 18 C -0.139 4.139 19 C 0.018 3.982 20 H 0.087 0.913 21 C -0.191 4.191 22 C -0.194 4.194 23 C -0.031 4.031 24 O -0.291 6.291 25 C -0.025 4.025 26 H 0.067 0.933 27 H 0.203 0.797 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.083 0.917 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.310 -23.548 2.972 24.835 hybrid contribution -0.141 -1.913 0.220 1.930 sum 7.169 -25.461 3.193 26.643 Atomic orbital electron populations 1.70888 1.06068 1.28522 1.53059 1.25822 0.97032 1.01090 1.00098 0.83230 0.74220 0.75490 0.75902 1.22184 1.22180 1.21002 1.20008 0.92053 0.85445 1.49048 0.91559 1.42269 1.04843 1.00356 1.89399 1.21235 0.94138 0.85139 0.93014 0.91819 1.23383 1.02837 0.91452 1.01828 1.22104 0.95384 0.97346 0.87341 1.48492 1.51003 1.06292 1.29072 1.20377 0.80968 0.82674 0.84597 1.90683 1.41671 1.83867 1.26596 1.21596 1.02493 0.92928 1.00176 1.21547 1.00719 0.91557 1.00060 1.22825 0.81601 0.94825 0.98987 0.91310 1.23008 0.98230 0.96178 1.01666 1.23135 0.94868 1.00359 1.01034 1.23529 0.97965 0.82877 0.98754 1.88910 1.19374 1.26025 1.94826 1.22503 0.97350 0.83909 0.98757 0.93311 0.79705 0.90629 0.90731 0.91695 0.91985 0.88369 0.89247 0.89989 0.90346 0.90631 0.90013 0.90338 0.90416 0.92298 0.89050 0.91657 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.85 13.70 55.49 0.76 -28.09 16 2 C -0.04 -1.22 5.50 -17.43 -0.10 -1.32 16 3 Si 1.08 25.59 29.92 -169.99 -5.09 20.51 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.33 -9.23 9.98 -15.06 -0.15 -9.38 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.73 -17.92 5.28 -51.35 -0.27 -18.19 16 10 C 0.18 3.50 3.69 -65.79 -0.24 3.26 16 11 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 12 C -0.15 -2.56 6.65 -24.90 -0.17 -2.73 16 13 C 0.10 1.37 6.49 -3.06 -0.02 1.35 16 14 N -0.61 -9.75 3.33 -170.52 -0.57 -10.31 16 15 C 0.52 8.23 7.85 -10.98 -0.09 8.15 16 16 O -0.55 -10.53 16.24 5.56 0.09 -10.44 16 17 C -0.13 -1.51 4.81 -27.88 -0.13 -1.64 16 18 C -0.10 -1.08 3.99 -26.73 -0.11 -1.18 16 19 C 0.08 0.66 3.41 -26.16 -0.09 0.57 16 20 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 21 C -0.15 -1.07 6.64 -25.21 -0.17 -1.24 16 22 C -0.16 -0.98 7.15 -24.73 -0.18 -1.16 16 23 C 0.05 0.33 7.72 38.21 0.29 0.62 16 24 O -0.37 -3.82 10.84 -35.23 -0.38 -4.20 16 25 C 0.10 1.79 6.53 -2.53 -0.02 1.78 16 26 H 0.26 7.72 6.77 -40.82 -0.28 7.44 16 27 H 0.37 9.41 6.54 -40.82 -0.27 9.14 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 1.09 7.91 -51.93 -0.41 0.68 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 35 H 0.08 0.96 8.10 -51.92 -0.42 0.54 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.59 7.70 -51.93 -0.40 0.19 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 1.22 8.00 -51.93 -0.42 0.81 16 43 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 LS Contribution 347.68 15.07 5.24 5.24 Total: -1.00 -33.13 347.68 -8.68 -41.81 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.31 Total: 6.59 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -1.16 Total: -2.91 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.08 Total: -56.59 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.29 Total: -14.64 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.09 Total: 20.51 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.13 -8.68 -41.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018544462.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.889 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds